CsaV3_3G018410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14130007 .. 14130348 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTTCAACCTTGCTCTGGCACTCTCAGCAGAAACCTCAAAATCTCCTCTCCATTTCTCCATAAAACTCTCTCTCTCTCTCAACCTTCTCTTCACTTTCCGTTAGCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

mRNA sequence

ATGTTCCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

Coding sequence (CDS)

ATGTTCCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

Protein sequence

MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISLFFIQSSPLYA
Homology
[Close]
BLAST of CsaV3_3G018410 vs. NCBI nr
Match: KGN57518.1 (hypothetical protein Csa_3G203250 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60
          MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT
Sbjct: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60

Query: 61 LAVMAISLFFIQSSPLYA 79
          LAVMAISLFFIQSSPLYA
Sbjct: 61 LAVMAISLFFIQSSPLYA 78

[Close]
BLAST of CsaV3_3G018410 vs. TrEMBL
Match: tr|A0A0A0L719|A0A0A0L719_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60
          MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT
Sbjct: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60

Query: 61 LAVMAISLFFIQSSPLYA 79
          LAVMAISLFFIQSSPLYA
Sbjct: 61 LAVMAISLFFIQSSPLYA 78

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57518.14.5e-34100.00hypothetical protein Csa_3G203250 [Cucumis sativus][more]
BLAST of CsaV3_3G018410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L719|A0A0A0L719_CUCSA3.0e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018410.1CsaV3_3G018410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018410CsGy3G018200Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018410ClCG05G010110Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018410Cla97C05G092520Watermelon (97103) v2cucwmbB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018410Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018410Cucumber (Gy14) v2cgybcucB329
CsaV3_3G018410Cucumber (Gy14) v1cgycucB123
CsaV3_3G018410Cucumber (Gy14) v1cgycucB338
CsaV3_3G018410Cucumber (Gy14) v1cgycucB369
CsaV3_3G018410Cucurbita maxima (Rimu)cmacucB0145
CsaV3_3G018410Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018410Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018410Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018410Cucurbita moschata (Rifu)cmocucB0133
CsaV3_3G018410Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018410Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018410Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018410Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018410Cucurbita pepo (Zucchini)cpecucB0302
CsaV3_3G018410Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018410Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018410Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018410Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018410Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018410Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018410Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018410Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018410Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018410Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018410Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018410Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018410Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018410Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018410Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018410Watermelon (97103) v1cucwmB252
CsaV3_3G018410Watermelon (97103) v1cucwmB279
CsaV3_3G018410Watermelon (97103) v2cucwmbB201
CsaV3_3G018410Wax gourdcucwgoB313
CsaV3_3G018410Wax gourdcucwgoB287
CsaV3_3G018410Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018410Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018410Silver-seed gourdcarcucB0236
CsaV3_3G018410Silver-seed gourdcarcucB0403