Cla97C05G092520 (gene) Watermelon (97103) v2

Overview
NameCla97C05G092520
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 10616643 .. 10618412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGTAAGCACACACGAGTAGTTTACTAAACTTTTCATTTTATATGTAAAGATTCTTGACATATTCAATTTAGAATTTTATGTCTAATATGACTCTAAAATTTTCAATATTGTGCTTAATAAGTCCGTCTATGGTTTTAAAAACGCCAAATAGAGGCACAAAATTGAAATTTCATAAACTTATTAAACACAAAGTTGAAAATTTAAATATCATTTGATAACCATTGGAGCTTTTGTTTTTGTTTTAAATTAAGTCTATAAAAACTCTTTTATCTTCAAGTTAATTTGCTTTGTTATCTACATTTTACAAATATTTTAAAAAATTAATGAAATAGTTATTTTTAAATATAGCAAAATGAGCCAAAATAGTTACAAATATAATAAAATATCGAATCTATCTAAGACAATTACTTTTCTAAGCTTTAGAAAAAAAAAGTTCTAATAATATGTTTTTTGTTTTTGAAATTGGGTTGTTTTATATCGATAATTTAAGTAAATTACACATTTAACCTTAAAACATGATATATTTACGAACTTTTTCGAATAAAACACTTGCCGCCCCATGTTCATCTTCAACCTGCACTGCCACTCTCAGAATAAACACAACCCGCAAAATCCCCTCTTCATTTCTCCATAGATTCTCTCTCTCAAGCATTAGTTTACTTTCCATTAATTCAAGGCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATGTTTGATCAAACTCTCCACTGAAGGTCTGTTTACTGGTTGCTTCTGATATCGTTGTGTTTGATTATTGGAGGAATTTGTGTAGTTTCGTATTTGAAATTAAACGAAACTGTCTTCATTTTTGTGCGTGTTAAGTTTTATTGGTGTTTTGGACTGGTTTTCGATATGGAGGCTTGCCCTAAAGTACTTCAATGGGCTGCCTCATGAAGCAAGGGAAATAGTTTATTTTCTTCACGTTTTTCCATTTATTTTTCATACTAGAAATTCCTTCAGTTCCACTGTCTTTGTTGTTGAGGGTTGACTTCCTGTGCTTTCATTCGCTTCTCTTTTTGCTGATCCAGAATGATCCTTCTGGGTCTAAAAGAATTCCGTATGGGTTCTTTTTTAAGGCCTCCTCACCTTAGGTGCTCAAGTGGTTAAGAGAACTCTTGATTTGAAGTACACCTTTGCTACGAAAATACTACCATCACCCACAATTTCCCTCTGTCCTCGCGGTGAAGAGAAGAAACTGTTGTTATATTGTAGACAAAAACTCCCATGAGTTGCGACCACTGACAAACCACACCATTGCAATATGATACATAAACCTTATTCTAGTATTTGAATGTGGACACAACGTCATGGGACGACCCATATAGGATTTTTCCTACGGACTGTGAAAGGCGCTTTCTACATATTCCTCTCTTGATTTGTTCTCGGTTGTATACAAAATATGTCAGTGATTGTTTCTGAAATGAGTATTGATTGAACATGAATTCTTCACTCTCATTGTAGCATTTATTGCTTAGCAAACCAAGGCTAATTTTTGCAAAGCATATAGATCTTGTATTAAATATATTCTTTATGTTTATGTTTTTTGCAGAGTTGA

mRNA sequence

ATGTCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATAGTTGA

Coding sequence (CDS)

ATGTCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATAGTTGA

Protein sequence

MSEVSSLHYSSSLQPTGISSLLSSLFPYSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISPFIIQSSPLYS
Homology
[Close]
BLAST of Cla97C05G092520 vs. NCBI nr
Match: KGN57518.1 (hypothetical protein Csa_3G203250 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 9  YSSSLQPTGISSLLSSLFP--YSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISP 68
          Y +S  PT I SLLSSL P    SRKSFLS+EG  VVIASLDRRP M P+FTL  MAIS 
Sbjct: 9  YLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISL 68

Query: 69 FIIQSSPLYS 77
          F IQSSPLY+
Sbjct: 69 FFIQSSPLYA 78

[Close]
BLAST of Cla97C05G092520 vs. TrEMBL
Match: tr|A0A0A0L719|A0A0A0L719_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0 

Query: 9  YSSSLQPTGISSLLSSLFP--YSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISP 68
          Y +S  PT I SLLSSL P    SRKSFLS+EG  VVIASLDRRP M P+FTL  MAIS 
Sbjct: 9  YLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISL 68

Query: 69 FIIQSSPLYS 77
          F IQSSPLY+
Sbjct: 69 FFIQSSPLYA 78

The following BLAST results are available for this feature:
BLAST of Cla97C05G092520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57518.14.7e-1268.57hypothetical protein Csa_3G203250 [Cucumis sativus][more]
BLAST of Cla97C05G092520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L719|A0A0A0L719_CUCSA3.1e-1268.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1[more]
BLAST of Cla97C05G092520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G092520 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G092520.1Cla97C05G092520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G092520Csa3G203250Cucumber (Chinese Long) v2cuwmbB215
Cla97C05G092520ClCG05G010110Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G092520CsaV3_3G018410Cucumber (Chinese Long) v3cucwmbB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G092520Watermelon (97103) v2wmbwmbB021
Cla97C05G092520Watermelon (97103) v2wmbwmbB101
Cla97C05G092520Silver-seed gourdcarwmbB0213
Cla97C05G092520Silver-seed gourdcarwmbB0395
Cla97C05G092520Silver-seed gourdcarwmbB0396
Cla97C05G092520Cucumber (Gy14) v2cgybwmbB206
Cla97C05G092520Cucumber (Gy14) v2cgybwmbB514
Cla97C05G092520Cucumber (Gy14) v1cgywmbB396
Cla97C05G092520Cucumber (Gy14) v1cgywmbB435
Cla97C05G092520Cucurbita maxima (Rimu)cmawmbB129
Cla97C05G092520Cucurbita maxima (Rimu)cmawmbB347
Cla97C05G092520Cucurbita maxima (Rimu)cmawmbB536
Cla97C05G092520Cucurbita maxima (Rimu)cmawmbB763
Cla97C05G092520Cucurbita moschata (Rifu)cmowmbB111
Cla97C05G092520Cucurbita moschata (Rifu)cmowmbB332
Cla97C05G092520Cucurbita moschata (Rifu)cmowmbB516
Cla97C05G092520Cucurbita moschata (Rifu)cmowmbB735
Cla97C05G092520Wild cucumber (PI 183967)cpiwmbB221
Cla97C05G092520Wild cucumber (PI 183967)cpiwmbB567
Cla97C05G092520Cucumber (Chinese Long) v3cucwmbB562
Cla97C05G092520Cucumber (Chinese Long) v2cuwmbB541
Cla97C05G092520Bottle gourd (USVL1VR-Ls)lsiwmbB236
Cla97C05G092520Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G092520Melon (DHL92) v3.6.1medwmbB178
Cla97C05G092520Melon (DHL92) v3.6.1medwmbB424
Cla97C05G092520Melon (DHL92) v3.6.1medwmbB543
Cla97C05G092520Melon (DHL92) v3.5.1mewmbB192
Cla97C05G092520Melon (DHL92) v3.5.1mewmbB434
Cla97C05G092520Melon (DHL92) v3.5.1mewmbB549
Cla97C05G092520Watermelon (Charleston Gray)wcgwmbB159
Cla97C05G092520Watermelon (97103) v1wmwmbB206
Cla97C05G092520Watermelon (97103) v1wmwmbB343
Cla97C05G092520Wax gourdwgowmbB179
Cla97C05G092520Wax gourdwgowmbB258