Cla97C05G092520.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G092520.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 10616643 .. 10618412 (-)
Sequence length	231

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTAAGCACACACGAGTAGTTTACTAAACTTTTCATTTTATATGTAAAGATTCTTGACATATTCAATTTAGAATTTTATGTCTAATATGACTCTAAAATTTTCAATATTGTGCTTAATAAGTCCGTCTATGGTTTTAAAAACGCCAAATAGAGGCACAAAATTGAAATTTCATAAACTTATTAAACACAAAGTTGAAAATTTAAATATCATTTGATAACCATTGGAGCTTTTGTTTTTGTTTTAAATTAAGTCTATAAAAACTCTTTTATCTTCAAGTTAATTTGCTTTGTTATCTACATTTTACAAATATTTTAAAAAATTAATGAAATAGTTATTTTTAAATATAGCAAAATGAGCCAAAATAGTTACAAATATAATAAAATATCGAATCTATCTAAGACAATTACTTTTCTAAGCTTTAGAAAAAAAAAGTTCTAATAATATGTTTTTTGTTTTTGAAATTGGGTTGTTTTATATCGATAATTTAAGTAAATTACACATTTAACCTTAAAACATGATATATTTACGAACTTTTTCGAATAAAACACTTGCCGCCCCATGTTCATCTTCAACCTGCACTGCCACTCTCAGAATAAACACAACCCGCAAAATCCCCTCTTCATTTCTCCATAGATTCTCTCTCTCAAGCATTAGTTTACTTTCCATTAATTCAAGGCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATGTTTGATCAAACTCTCCACTGAAGGTCTGTTTACTGGTTGCTTCTGATATCGTTGTGTTTGATTATTGGAGGAATTTGTGTAGTTTCGTATTTGAAATTAAACGAAACTGTCTTCATTTTTGTGCGTGTTAAGTTTTATTGGTGTTTTGGACTGGTTTTCGATATGGAGGCTTGCCCTAAAGTACTTCAATGGGCTGCCTCATGAAGCAAGGGAAATAGTTTATTTTCTTCACGTTTTTCCATTTATTTTTCATACTAGAAATTCCTTCAGTTCCACTGTCTTTGTTGTTGAGGGTTGACTTCCTGTGCTTTCATTCGCTTCTCTTTTTGCTGATCCAGAATGATCCTTCTGGGTCTAAAAGAATTCCGTATGGGTTCTTTTTTAAGGCCTCCTCACCTTAGGTGCTCAAGTGGTTAAGAGAACTCTTGATTTGAAGTACACCTTTGCTACGAAAATACTACCATCACCCACAATTTCCCTCTGTCCTCGCGGTGAAGAGAAGAAACTGTTGTTATATTGTAGACAAAAACTCCCATGAGTTGCGACCACTGACAAACCACACCATTGCAATATGATACATAAACCTTATTCTAGTATTTGAATGTGGACACAACGTCATGGGACGACCCATATAGGATTTTTCCTACGGACTGTGAAAGGCGCTTTCTACATATTCCTCTCTTGATTTGTTCTCGGTTGTATACAAAATATGTCAGTGATTGTTTCTGAAATGAGTATTGATTGAACATGAATTCTTCACTCTCATTGTAGCATTTATTGCTTAGCAAACCAAGGCTAATTTTTGCAAAGCATATAGATCTTGTATTAAATATATTCTTTATGTTTATGTTTTTTGCAGAGTTGA

mRNA sequence

ATGTCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATAGTTGA

Coding sequence (CDS)

ATGTCAGAAGTTTCCTCTCTTCATTACTCGAGCTCGCTTCAGCCTACTGGCATTTCCTCTCTTTTGAGCTCTCTCTTTCCCTATTCAAGCCGGAAGTCGTTTCTTTCCGTGGAAGGTGATCTGGTGGTTATCGCCTCTCTTGATCGGAGGCCGAAGATGTCGCCTGAGTTCACATTAGTGGCGATGGCCATCTCGCCGTTTATTATTCAGTCTTCACCTCTCTATAGTTGA

Protein sequence

MSEVSSLHYSSSLQPTGISSLLSSLFPYSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISPFIIQSSPLYS

Homology

[Close]

BLAST of Cla97C05G092520.1 vs. NCBI nr
Match: KGN57518.1 (hypothetical protein Csa_3G203250 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 9  YSSSLQPTGISSLLSSLFP--YSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISP 68
          Y +S  PT I SLLSSL P    SRKSFLS+EG  VVIASLDRRP M P+FTL  MAIS 
Sbjct: 9  YLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISL 68

Query: 69 FIIQSSPLYS 77
          F IQSSPLY+
Sbjct: 69 FFIQSSPLYA 78

[Close]

BLAST of Cla97C05G092520.1 vs. TrEMBL
Match: tr|A0A0A0L719|A0A0A0L719_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 9  YSSSLQPTGISSLLSSLFP--YSSRKSFLSVEGDLVVIASLDRRPKMSPEFTLVAMAISP 68
          Y +S  PT I SLLSSL P    SRKSFLS+EG  VVIASLDRRP M P+FTL  MAIS 
Sbjct: 9  YLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISL 68

Query: 69 FIIQSSPLYS 77
          F IQSSPLY+
Sbjct: 69 FFIQSSPLYA 78

The following BLAST results are available for this feature:

BLAST of Cla97C05G092520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57518.1	4.7e-12	68.57	hypothetical protein Csa_3G203250 [Cucumis sativus]	[more]

BLAST of Cla97C05G092520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L719\|A0A0A0L719_CUCSA	3.1e-12	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1	[more]

BLAST of Cla97C05G092520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G092520.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C05G092520	Cla97C05G092520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C05G092520.1	Cla97C05G092520.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G092520.1.CDS.3	Cla97C05G092520.1.CDS.3	CDS
Cla97C05G092520.1.CDS.2	Cla97C05G092520.1.CDS.2	CDS
Cla97C05G092520.1.CDS.1	Cla97C05G092520.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G092520.1.exon.3	Cla97C05G092520.1.exon.3	exon
Cla97C05G092520.1.exon.2	Cla97C05G092520.1.exon.2	exon
Cla97C05G092520.1.exon.1	Cla97C05G092520.1.exon.1	exon