CsaV3_3G018410.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018410.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14130007 .. 14130348 (+)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTTCAACCTTGCTCTGGCACTCTCAGCAGAAACCTCAAAATCTCCTCTCCATTTCTCCATAAAACTCTCTCTCTCTCTCAACCTTCTCTTCACTTTCCGTTAGCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

mRNA sequence

ATGTTCCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

Coding sequence (CDS)

ATGTTCCTGAAGGTTGAATCTCCATACCTGACCTCGTTTCATCCTACTCGGATTCCCTCTCTTTTGAGCTCTCTCGTTCCCTGTTTAAGCCGGAGCCGGAAGTCCTTTCTTTCACTGGAAGGTTACCCTGTAGTTATCGCCTCTCTTGATCGGAGGCCCATGATGTTTCCTGACTTCACATTAGCAGTGATGGCCATCTCTCTGTTTTTCATTCAGTCTTCACCTCTCTATGCTTGA

Protein sequence

MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFTLAVMAISLFFIQSSPLYA
Homology
[Close]
BLAST of CsaV3_3G018410.1 vs. NCBI nr
Match: KGN57518.1 (hypothetical protein Csa_3G203250 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60
          MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT
Sbjct: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60

Query: 61 LAVMAISLFFIQSSPLYA 79
          LAVMAISLFFIQSSPLYA
Sbjct: 61 LAVMAISLFFIQSSPLYA 78

[Close]
BLAST of CsaV3_3G018410.1 vs. TrEMBL
Match: tr|A0A0A0L719|A0A0A0L719_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60
          MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT
Sbjct: 1  MFLKVESPYLTSFHPTRIPSLLSSLVPCLSRSRKSFLSLEGYPVVIASLDRRPMMFPDFT 60

Query: 61 LAVMAISLFFIQSSPLYA 79
          LAVMAISLFFIQSSPLYA
Sbjct: 61 LAVMAISLFFIQSSPLYA 78

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57518.14.5e-34100.00hypothetical protein Csa_3G203250 [Cucumis sativus][more]
BLAST of CsaV3_3G018410.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018410.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018410.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L719|A0A0A0L719_CUCSA3.0e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G018410CsaV3_3G018410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018410.1.exon1CsaV3_3G018410.1.exon1exon
CsaV3_3G018410.1.exon2CsaV3_3G018410.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G018410.1.cds1CsaV3_3G018410.1.cds1CDS
CsaV3_3G018410.1.cds2CsaV3_3G018410.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G018410.1CsaV3_3G018410.1-proteinpolypeptide