CsaV3_3G016240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3 : 12135675 .. 12137882 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGAGTAAATTCATGGGGTTATATTAGAGGTATATATTTTCAGTTCATTTTGAATAAATTTTCAGCCGAAGAAAAAATATTTGTATAGAAAAGAAACAATTATCAGAAACAATACTTAGATAAATGATGTTAGTTGTAAAAATTTATTCGTACCCAATTTTGGTGTCATAAAATTACGATGGGGTGTGACTGTGGGCTGCGAGAACGAAACCCCAAATGAACGACCATTTCCCTCTTCTTCTCCAACGGTTTGTTTTTCCAATGCTGATTTCTTTGCACTTGTTAACTCCACCCTCATCTTCTCTTCTTCTCTTCTGTTCTTCCAAACCCAAAAAATCCAAGAAAGAGAGAAGGAAACTTCTCCACCAAAAACTTCTCCGCATTAGCAAAGCTAAACAGTCCACTGATCTCTCCTTCCCCAAATCCTCGCCAACCCCTCTCTTAATCCACCCCAAACCCTTCTTCCAGTCCAAAATTCAAGCCCTTGATGCTGTTCTCACCGACCTTGAAGCTTCCATCGACAATGGCCTCTTTATTGATCCTGAAATTTTCTCTTCCCTTTTGGAACTTTGTTACCAATTGCAAGCTATTCACCATGGTATTCGGATTCATCGCTTAATACCCACCAATCTTTTAAGGAGAAATGTGGGTATTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATGTATTCCAAATGTGGTTGCATTGTGAGGGCTAGGAAAGTGTTTGATCAGATTGAGTATAAGGATATAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTTCACTTTGAGGCATTAGACATCTTTGATCAAATGATTCAAGAAGGTTACGAGCCCGATTCGGTTGCTTTGTCCACCCTACTTTCTAACATTTCGTCAATGAAATTCAAGTTACATATTCATGGATGGGTAATTCGACATGGAGTCGAATGGAATTTGTCCATTGCTAACTCCTTGATAGTCATGTATGCCAAATGTGGTAAGCTTAACAGAGCAAAATGGCTGTTCCAGCAAATGCCTCAAAAGGACATGGTCTCATGGAACTCCATAATCTCTGCTCATTTCAATAGCGCAGAAGCTTTGACATATTTCGAAGTGATGGAAAGCCTTGGTGTTTCGCCAGACGGTGTAACATTTGTGTCATTGTTATCAACTTGTGCTCATCTGGGGTTGGTGAAGGAAGGGGGGAAATTGTATTTTTTGATGAAGGGGAAGTACGGAATAAGACCAACAATTGAACATTATGCTTGTATGGTGAATCTTTACGGGAGAGCAGGGATGATTGAAGAAGCTTATAAAATCATAACGAAAGGGATGGAGATCGAGGCAGGTCCGACCATATGGGGGGCGTTGTTGTATGCGTGTTATCTCCATAGCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAAGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAGTGTAGATAATAATTGAAATCTATTCACACTCATGGATGGATAATGAATTCATCTGGATAGATAACAGGTTCAGTGTGAAGTTAATATGAGAATTCACACAAAGTTGGAAATGGATTCCACTGAGAGTAAAGCAATCAATGGCAGGTTGGTTTTCTTTCCCATCTCACTCAACATTCATTTTTTGGGTCTTTATAACCTTCTTTATGGTTTTTCTAAAATAGAAAGTAGCTAATCTCGGTTAGGATTCACAACCCAAAGCTTCTTTCAAAACCTTACGGTTCTTTGTTTGATTACGTTTCAAGATTTTACCCTTTTAATTTTAATTTTTACACCAATGTCTATTAACTATTTAAAAT

mRNA sequence

ATGAACGACCATTTCCCTCTTCTTCTCCAACGGTTTGTTTTTCCAATGCTGATTTCTTTGCACTTGTTAACTCCACCCTCATCTTCTCTTCTTCTCTTCTGTTCTTCCAAACCCAAAAAATCCAAGAAAGAGAGAAGGAAACTTCTCCACCAAAAACTTCTCCGCATTAGCAAAGCTAAACAGTCCACTGATCTCTCCTTCCCCAAATCCTCGCCAACCCCTCTCTTAATCCACCCCAAACCCTTCTTCCAGTCCAAAATTCAAGCCCTTGATGCTGTTCTCACCGACCTTGAAGCTTCCATCGACAATGGCCTCTTTATTGATCCTGAAATTTTCTCTTCCCTTTTGGAACTTTGTTACCAATTGCAAGCTATTCACCATGGTATTCGGATTCATCGCTTAATACCCACCAATCTTTTAAGGAGAAATGTGGGTATTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATGTATTCCAAATGTGGTTGCATTGTGAGGGCTAGGAAAGTGTTTGATCAGATTGAGTATAAGGATATAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTTCACTTTGAGGCATTAGACATCTTTGATCAAATGATTCAAGAAGGTTACGAGCCCGATTCGGTTGCTTTGTCCACCCTACTTTCTAACATTTCGTCAATGAAATTCAAGTTACATATTCATGGATGGGTAATTCGACATGGAGTCGAATGGAATTTGTCCATTGCTAACTCCTTGATAGTCATGTATGCCAAATGTGGTAAGCTTAACAGAGCAAAATGGCTGTTCCAGCAAATGCCTCAAAAGGACATGGTCTCATGGAACTCCATAATCTCTGCTCATTTCAATAGCGCAGAAGCTTTGACATATTTCGAAGTGATGGAAAGCCTTGGTGTTTCGCCAGACGGTGTAACATTTGTGTCATTGTTATCAACTTGTGCTCATCTGGGGTTGGTGAAGGAAGGGGGGAAATTGTATTTTTTGATGAAGGGGAAGTACGGAATAAGACCAACAATTGAACATTATGCTTGTATGGTGAATCTTTACGGGAGAGCAGGGATGATTGAAGAAGCTTATAAAATCATAACGAAAGGGATGGAGATCGAGGCAGGTCCGACCATATGGGGGGCGTTGTTGTATGCGTGTTATCTCCATAGCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAAGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG

Coding sequence (CDS)

ATGAACGACCATTTCCCTCTTCTTCTCCAACGGTTTGTTTTTCCAATGCTGATTTCTTTGCACTTGTTAACTCCACCCTCATCTTCTCTTCTTCTCTTCTGTTCTTCCAAACCCAAAAAATCCAAGAAAGAGAGAAGGAAACTTCTCCACCAAAAACTTCTCCGCATTAGCAAAGCTAAACAGTCCACTGATCTCTCCTTCCCCAAATCCTCGCCAACCCCTCTCTTAATCCACCCCAAACCCTTCTTCCAGTCCAAAATTCAAGCCCTTGATGCTGTTCTCACCGACCTTGAAGCTTCCATCGACAATGGCCTCTTTATTGATCCTGAAATTTTCTCTTCCCTTTTGGAACTTTGTTACCAATTGCAAGCTATTCACCATGGTATTCGGATTCATCGCTTAATACCCACCAATCTTTTAAGGAGAAATGTGGGTATTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATGTATTCCAAATGTGGTTGCATTGTGAGGGCTAGGAAAGTGTTTGATCAGATTGAGTATAAGGATATAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTTCACTTTGAGGCATTAGACATCTTTGATCAAATGATTCAAGAAGGTTACGAGCCCGATTCGGTTGCTTTGTCCACCCTACTTTCTAACATTTCGTCAATGAAATTCAAGTTACATATTCATGGATGGGTAATTCGACATGGAGTCGAATGGAATTTGTCCATTGCTAACTCCTTGATAGTCATGTATGCCAAATGTGGTAAGCTTAACAGAGCAAAATGGCTGTTCCAGCAAATGCCTCAAAAGGACATGGTCTCATGGAACTCCATAATCTCTGCTCATTTCAATAGCGCAGAAGCTTTGACATATTTCGAAGTGATGGAAAGCCTTGGTGTTTCGCCAGACGGTGTAACATTTGTGTCATTGTTATCAACTTGTGCTCATCTGGGGTTGGTGAAGGAAGGGGGGAAATTGTATTTTTTGATGAAGGGGAAGTACGGAATAAGACCAACAATTGAACATTATGCTTGTATGGTGAATCTTTACGGGAGAGCAGGGATGATTGAAGAAGCTTATAAAATCATAACGAAAGGGATGGAGATCGAGGCAGGTCCGACCATATGGGGGGCGTTGTTGTATGCGTGTTATCTCCATAGCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAAGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG

Protein sequence

MNDHFPLLLQRFVFPMLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS
Homology
[Close]
BLAST of CsaV3_3G016240 vs. NCBI nr
Match: KGN57280.1 (hypothetical protein Csa_3G176270 [Cucumis sativus])

HSP 1 Score: 1035.0 bits (2675), Expect = 9.0e-299
Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0 

Query: 1   MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 60
           MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK
Sbjct: 1   MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 60

Query: 61  QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 120
           QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY
Sbjct: 61  QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 120

Query: 121 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 180
           QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW
Sbjct: 121 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 180

Query: 181 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 240
           NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR
Sbjct: 181 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 240

Query: 241 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 300
           SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI
Sbjct: 241 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 300

Query: 301 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 360
           FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK
Sbjct: 301 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 360

Query: 361 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 420
           LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH
Sbjct: 361 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 420

Query: 421 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 480
           LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW
Sbjct: 421 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 480

Query: 481 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 540
           GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER
Sbjct: 481 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 540

Query: 541 GLNS 545
           GLNS
Sbjct: 541 GLNS 544

[Close]
BLAST of CsaV3_3G016240 vs. NCBI nr
Match: XP_011652769.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus])

HSP 1 Score: 1035.0 bits (2675), Expect = 9.0e-299
Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0 

Query: 1   MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 60
           MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK
Sbjct: 250 MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 309

Query: 61  QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 120
           QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY
Sbjct: 310 QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 369

Query: 121 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 180
           QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW
Sbjct: 370 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 429

Query: 181 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 240
           NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR
Sbjct: 430 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 489

Query: 241 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 300
           SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI
Sbjct: 490 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 549

Query: 301 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 360
           FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK
Sbjct: 550 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 609

Query: 361 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 420
           LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH
Sbjct: 610 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 669

Query: 421 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 480
           LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW
Sbjct: 670 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 729

Query: 481 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 540
           GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER
Sbjct: 730 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 789

Query: 541 GLNS 545
           GLNS
Sbjct: 790 GLNS 793

[Close]
BLAST of CsaV3_3G016240 vs. NCBI nr
Match: XP_016898932.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 953.7 bits (2464), Expect = 2.6e-274
Identity = 503/529 (95.09%), Postives = 511/529 (96.60%), Query Frame = 0 

Query: 16  MLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAKQSTDLSFPKSSPTPL 75
           MLISL LL  XXXXXXXXXXXXXXXXXXXXXXXX QKLLRISKAKQSTDLSFPKSS TPL
Sbjct: 1   MLISLQLLTPXXXXXXXXXXXXXXXXXXXXXXXXHQKLLRISKAKQSTDLSFPKSSSTPL 60

Query: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135
           LIH KPFFQSKIQALDAVLTDLE SIDNGL IDPEIFSSLLELCYQL+AIHHGIRIHRLI
Sbjct: 61  LIHSKPFFQSKIQALDAVLTDLETSIDNGLLIDPEIFSSLLELCYQLRAIHHGIRIHRLI 120

Query: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195
           PTNLLRRNVGISSKLLRLYAS GYMEDAHQVFDEMG RNFSAFAWNSLISGYAELGLYED
Sbjct: 121 PTNLLRRNVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYED 180

Query: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD 255
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD
Sbjct: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD 240

Query: 256 MYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVA 315
           MYSKCGCIVRARKVFDQI YKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGY+PDSVA
Sbjct: 241 MYSKCGCIVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVA 300

Query: 316 LSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD 375
           LSTLLSNI S+KFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD
Sbjct: 301 LSTLLSNILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD 360

Query: 376 MVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMK 435
           MVSWNSIISAHFN+ EALTYFEVMESLGV PD VTFVSLLSTCAHLGLVKEGG+LY LMK
Sbjct: 361 MVSWNSIISAHFNTTEALTYFEVMESLGVLPDRVTFVSLLSTCAHLGLVKEGGRLYSLMK 420

Query: 436 GKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDI 495
           GKY IRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLH +VDI
Sbjct: 421 GKYRIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHRNVDI 480

Query: 496 AEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS 545
           AEIAAERLFELEPDNELNFELLMKIYGNAGRS+DEKRVKLMMAERGLNS
Sbjct: 481 AEIAAERLFELEPDNELNFELLMKIYGNAGRSDDEKRVKLMMAERGLNS 529

[Close]
BLAST of CsaV3_3G016240 vs. NCBI nr
Match: XP_022942651.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita moschata])

HSP 1 Score: 858.2 bits (2216), Expect = 1.5e-245
Identity = 415/493 (84.18%), Postives = 456/493 (92.49%), Query Frame = 0 

Query: 51  QKLLRISKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPE 110
           +KL+RISKAK++T L FPKSS TPLLIH KPF QSKIQALDAVL DLEAS+ NG+ ID E
Sbjct: 36  EKLIRISKAKEATRLPFPKSSSTPLLIHHKPFSQSKIQALDAVLNDLEASLHNGVPIDAE 95

Query: 111 IFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEM 170
           IFSSLLE CYQL+A+ HGIRIHRLIPTN LRRNVG+SSKLLRLYASFGYMEDAHQVFDEM
Sbjct: 96  IFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDAHQVFDEM 155

Query: 171 GNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQI 230
             RN SAF+WNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVLKACGGIGSI++
Sbjct: 156 CQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIRV 215

Query: 231 GEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTR 290
           GEAVHRH+VRSGFAGD+FVLNALVDMY+KCG I+RARKVFDQI  KD VSWNSMLTGYTR
Sbjct: 216 GEAVHRHIVRSGFAGDIFVLNALVDMYAKCGDIMRARKVFDQIVSKDTVSWNSMLTGYTR 275

Query: 291 HGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANS 350
           HGL  EAL+ FDQMIQEGYEPDSVALST++SNISS KFKLHIHGW IRHG+EWNLSIANS
Sbjct: 276 HGLLLEALNTFDQMIQEGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIANS 335

Query: 351 LIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVT 410
           LI MYA  GK+NRA+WLF+QMP++D+VSWN+IISAH N+++ALTYFEVMESLGV PD VT
Sbjct: 336 LIAMYANSGKINRARWLFEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGVLPDSVT 395

Query: 411 FVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKG 470
           FVSLLSTCAHL LVKEGGKLY  MKGKYGIRPTIEHYACMVNLYGRAG+IEEAY+IIT G
Sbjct: 396 FVSLLSTCAHLSLVKEGGKLYTEMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNG 455

Query: 471 MEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDE 530
           ME+EAGPT+WGALLYACYLH +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR EDE
Sbjct: 456 MEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDE 515

Query: 531 KRVKLMMAERGLN 544
           KRV+LMMAERGL+
Sbjct: 516 KRVRLMMAERGLD 528

[Close]
BLAST of CsaV3_3G016240 vs. NCBI nr
Match: XP_023549868.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 856.3 bits (2211), Expect = 5.7e-245
Identity = 412/493 (83.57%), Postives = 455/493 (92.29%), Query Frame = 0 

Query: 51  QKLLRISKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPE 110
           +KL+RISKAK++T L FPKSS TPLLIH KPF QSKIQALDAVL DLEAS+ NG+ ID E
Sbjct: 36  EKLIRISKAKEATRLPFPKSSSTPLLIHHKPFSQSKIQALDAVLNDLEASLHNGVPIDAE 95

Query: 111 IFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEM 170
           IFSSLLE CYQL+A+ HGIRIHRLIPTN LRRNVG+SSKLLRLYASFGYMEDAHQVFDEM
Sbjct: 96  IFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDAHQVFDEM 155

Query: 171 GNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQI 230
             RN SAF+WNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVLKACGGIGSI++
Sbjct: 156 CQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIRV 215

Query: 231 GEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTR 290
           GE VHRH+VRSGFAGD+FVLNALVDMY+KCG I+RARKVFDQI +KD VSWNSMLTGYTR
Sbjct: 216 GEGVHRHIVRSGFAGDIFVLNALVDMYAKCGDIMRARKVFDQIVHKDTVSWNSMLTGYTR 275

Query: 291 HGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANS 350
           HGL  EAL+ FDQMIQEGYEPDSVALST++SNISS KFKLHIHGW IRHG+EWNLSI NS
Sbjct: 276 HGLLLEALNTFDQMIQEGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNS 335

Query: 351 LIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVT 410
           LI MYA  GK+NRA+WLF+QMP++D+VSWN+IISAH N+++ALTYFEVMESLG  PD VT
Sbjct: 336 LIAMYANSGKINRARWLFEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVT 395

Query: 411 FVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKG 470
           FVSLLSTCAHL LVKEGGKLY +MKGKYGIRPTIEHYACMVNLYGRAG+IEEAY+IIT G
Sbjct: 396 FVSLLSTCAHLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNG 455

Query: 471 MEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDE 530
           ME+EAGPT+WGALLYACYLH +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR EDE
Sbjct: 456 MEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDE 515

Query: 531 KRVKLMMAERGLN 544
           KRV+LMMAERGL+
Sbjct: 516 KRVRLMMAERGLD 528

[Close]
BLAST of CsaV3_3G016240 vs. TAIR10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 641.3 bits (1653), Expect = 5.2e-184
Identity = 306/483 (63.35%), Postives = 382/483 (79.09%), Query Frame = 0 

Query: 63  TDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFI-DPEIFSSLLELCYQ 122
           T LSF K SPTPLLI  +   +++++ALD+V+TDLE S   G+ + +PEIF+SLLE CY 
Sbjct: 45  TSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQKGISLTEPEIFASLLETCYS 104

Query: 123 LQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWN 182
           L+AI HG+R+H LIP  LLR N+GISSKL+RLYAS GY E AH+VFD M  R+ S FAWN
Sbjct: 105 LRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWN 164

Query: 183 SLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRS 242
           SLISGYAELG YEDA+ALYFQM E+GV+PD FTFPRVLKACGGIGS+QIGEA+HR +V+ 
Sbjct: 165 SLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKE 224

Query: 243 GFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIF 302
           GF  DV+VLNALV MY+KCG IV+AR VFD I +KD VSWNSMLTGY  HGL  EALDIF
Sbjct: 225 GFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF 284

Query: 303 DQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKL 362
             M+Q G EPD VA+S++L+ + S K    +HGWVIR G+EW LS+AN+LIV+Y+K G+L
Sbjct: 285 RLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQL 344

Query: 363 NRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHL 422
            +A ++F QM ++D VSWN+IISAH  ++  L YFE M      PDG+TFVS+LS CA+ 
Sbjct: 345 GQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANT 404

Query: 423 GLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWG 482
           G+V++G +L+ LM  +YGI P +EHYACMVNLYGRAGM+EEAY +I + M +EAGPT+WG
Sbjct: 405 GMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWG 464

Query: 483 ALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERG 542
           ALLYACYLH + DI E+AA+RLFELEPDNE NFELL++IY  A R+ED +RV+ MM +RG
Sbjct: 465 ALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRG 524

Query: 543 LNS 545
           L +
Sbjct: 525 LET 527

[Close]
BLAST of CsaV3_3G016240 vs. TAIR10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 322.0 bits (824), Expect = 7.0e-88
Identity = 167/445 (37.53%), Postives = 276/445 (62.02%), Query Frame = 0 

Query: 110 EIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDE 169
           + +  L+  C    ++   +R+HR I  N   ++  +++KL+ +Y+  G ++ A +VFD+
Sbjct: 78  QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDK 137

Query: 170 MGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGG----I 229
              R  + + WN+L       G  E+ L LY++M   GVE D FT+  VLKAC      +
Sbjct: 138 --TRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTV 197

Query: 230 GSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSML 289
             +  G+ +H H+ R G++  V+++  LVDMY++ GC+  A  VF  +  +++VSW++M+
Sbjct: 198 NHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMI 257

Query: 290 TGYTRHGLHFEALDIFDQMIQEGYE--PDSVALSTLL---SNISSMKFKLHIHGWVIRHG 349
             Y ++G  FEAL  F +M++E  +  P+SV + ++L   +++++++    IHG+++R G
Sbjct: 258 ACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRG 317

Query: 350 VEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSAEALTYFE 409
           ++  L + ++L+ MY +CGKL   + +F +M  +D+VSWNS+IS+   H    +A+  FE
Sbjct: 318 LDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFE 377

Query: 410 VMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRA 469
            M + G SP  VTFVS+L  C+H GLV+EG +L+  M   +GI+P IEHYACMV+L GRA
Sbjct: 378 EMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRA 437

Query: 470 GMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELL 529
             ++EA K++ + M  E GP +WG+LL +C +H +V++AE A+ RLF LEP N  N+ LL
Sbjct: 438 NRLDEAAKMV-QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 497

Query: 530 MKIYGNAGRSEDEKRVKLMMAERGL 543
             IY  A   ++ KRVK ++  RGL
Sbjct: 498 ADIYAEAQMWDEVKRVKKLLEHRGL 519

[Close]
BLAST of CsaV3_3G016240 vs. TAIR10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-78
Identity = 165/486 (33.95%), Postives = 255/486 (52.47%), Query Frame = 0 

Query: 131 IHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAEL 190
           +H  I    LR N  +  KL+R YAS   +  A +VFDE+  RN      N +I  Y   
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN--VIIINVMIRSYVNN 120

Query: 191 GLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVL 250
           G Y + + ++  M    V PD++TFP VLKAC   G+I IG  +H    + G +  +FV 
Sbjct: 121 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 180

Query: 251 NALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYT--------------------- 310
           N LV MY KCG +  AR V D++  +D+VSWNS++ GY                      
Sbjct: 181 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 240

Query: 311 -----------------------------------------------RHGLHFEALDIFD 370
                                                          ++ +  EA++++ 
Sbjct: 241 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 300

Query: 371 QMIQEGYEPDSVALSTLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCG 430
           +M  +G+EPD+V+++++L    + S++     IHG++ R  +  NL + N+LI MYAKCG
Sbjct: 301 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 360

Query: 431 KLNRAKWLFQQMPQKDMVSWNSIISAHFNS---AEALTYFEVMESLGVSPDGVTFVSLLS 490
            L +A+ +F+ M  +D+VSW ++ISA+  S    +A+  F  ++  G+ PD + FV+ L+
Sbjct: 361 CLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLA 420

Query: 491 TCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAG 543
            C+H GL++EG   + LM   Y I P +EH ACMV+L GRAG ++EAY+ I + M +E  
Sbjct: 421 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI-QDMSMEPN 480

[Close]
BLAST of CsaV3_3G016240 vs. TAIR10
Match: AT3G14330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-77
Identity = 161/480 (33.54%), Postives = 274/480 (57.08%), Query Frame = 0 

Query: 72  PTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFID-PEIFSSLLELCYQLQAIHHGIR 131
           P    +  KP   SK   LD  +T +E S  +   +  PE ++ LL  C   +++HHGI+
Sbjct: 93  PWRQFVFTKPLGLSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIK 152

Query: 132 IHRLIPTN-LLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRN-FSAFAWNSLISGYA 191
           I  LI  N  LR N  + SKL+ L++    ++ A ++FD++ + +  +   W ++  GY+
Sbjct: 153 ICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYS 212

Query: 192 ELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVF 251
             G   DAL +Y  M    +EP NF+    LKAC  +  +++G  +H  +V+     D  
Sbjct: 213 RNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQV 272

Query: 252 VLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEG 311
           V N L+ +Y + G    ARKVFD +  +++V+WNS+++  ++     E  ++F +M +E 
Sbjct: 273 VYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEM 332

Query: 312 YEPDSVALSTLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAK 371
                  L+T+L   S ++++     IH  +++   + ++ + NSL+ MY KCG++  ++
Sbjct: 333 IGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSR 392

Query: 372 WLFQQMPQKDMVSWNSIISAHF---NSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLG 431
            +F  M  KD+ SWN +++ +    N  E +  FE M   GV+PDG+TFV+LLS C+  G
Sbjct: 393 RVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTG 452

Query: 432 LVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGA 491
           L + G  L+  MK ++ + P +EHYAC+V++ GRAG I+EA K+I + M  +   +IWG+
Sbjct: 453 LTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVI-ETMPFKPSASIWGS 512

Query: 492 LLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGL 543
           LL +C LH +V + EIAA+ LF LEP N  N+ ++  IY +A   ++  +++ MM +RG+
Sbjct: 513 LLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGV 571

[Close]
BLAST of CsaV3_3G016240 vs. TAIR10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-77
Identity = 158/452 (34.96%), Postives = 263/452 (58.19%), Query Frame = 0 

Query: 100 SIDNGL-FIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFG 159
           ++ NGL  +D     SLL  C +    + G+ IH     + L   + +S+KL+ LYA FG
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 160 YMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRV 219
            + D  +VFD M  R+    +WNS+I  Y        A++L+ +M    ++PD  T   +
Sbjct: 297 RLRDCQKVFDRMYVRDL--ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 356

Query: 220 LKACGGIGSIQIGEAVHRHVVRSG-FAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKD 279
                 +G I+   +V    +R G F  D+ + NA+V MY+K G +  AR VF+ +   D
Sbjct: 357 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 416

Query: 280 IVSWNSMLTGYTRHGLHFEALDIFDQMIQEG----YEPDSVALSTLLSNISSMKFKLHIH 339
           ++SWN++++GY ++G   EA+++++ M +EG     +   V++    S   +++  + +H
Sbjct: 417 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 476

Query: 340 GWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSA 399
           G ++++G+  ++ +  SL  MY KCG+L  A  LF Q+P+ + V WN++I+    H +  
Sbjct: 477 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 536

Query: 400 EALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACM 459
           +A+  F+ M   GV PD +TFV+LLS C+H GLV EG   + +M+  YGI P+++HY CM
Sbjct: 537 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 596

Query: 460 VNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDN 519
           V++YGRAG +E A K I K M ++   +IWGALL AC +H +VD+ +IA+E LFE+EP++
Sbjct: 597 VDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 656

Query: 520 ELNFELLMKIYGNAGRSEDEKRVKLMMAERGL 543
                LL  +Y +AG+ E    ++ +   +GL
Sbjct: 657 VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685

[Close]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match: sp|Q9SB36|PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 641.3 bits (1653), Expect = 9.4e-183
Identity = 306/483 (63.35%), Postives = 382/483 (79.09%), Query Frame = 0 

Query: 63  TDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFI-DPEIFSSLLELCYQ 122
           T LSF K SPTPLLI  +   +++++ALD+V+TDLE S   G+ + +PEIF+SLLE CY 
Sbjct: 45  TSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQKGISLTEPEIFASLLETCYS 104

Query: 123 LQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWN 182
           L+AI HG+R+H LIP  LLR N+GISSKL+RLYAS GY E AH+VFD M  R+ S FAWN
Sbjct: 105 LRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWN 164

Query: 183 SLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRS 242
           SLISGYAELG YEDA+ALYFQM E+GV+PD FTFPRVLKACGGIGS+QIGEA+HR +V+ 
Sbjct: 165 SLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKE 224

Query: 243 GFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIF 302
           GF  DV+VLNALV MY+KCG IV+AR VFD I +KD VSWNSMLTGY  HGL  EALDIF
Sbjct: 225 GFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF 284

Query: 303 DQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKL 362
             M+Q G EPD VA+S++L+ + S K    +HGWVIR G+EW LS+AN+LIV+Y+K G+L
Sbjct: 285 RLMVQNGIEPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQL 344

Query: 363 NRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHL 422
            +A ++F QM ++D VSWN+IISAH  ++  L YFE M      PDG+TFVS+LS CA+ 
Sbjct: 345 GQACFIFDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANT 404

Query: 423 GLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWG 482
           G+V++G +L+ LM  +YGI P +EHYACMVNLYGRAGM+EEAY +I + M +EAGPT+WG
Sbjct: 405 GMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWG 464

Query: 483 ALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERG 542
           ALLYACYLH + DI E+AA+RLFELEPDNE NFELL++IY  A R+ED +RV+ MM +RG
Sbjct: 465 ALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRG 524

Query: 543 LNS 545
           L +
Sbjct: 525 LET 527

[Close]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match: sp|Q9STF3|PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.3e-86
Identity = 167/445 (37.53%), Postives = 276/445 (62.02%), Query Frame = 0 

Query: 110 EIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDE 169
           + +  L+  C    ++   +R+HR I  N   ++  +++KL+ +Y+  G ++ A +VFD+
Sbjct: 78  QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDK 137

Query: 170 MGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGG----I 229
              R  + + WN+L       G  E+ L LY++M   GVE D FT+  VLKAC      +
Sbjct: 138 --TRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTV 197

Query: 230 GSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSML 289
             +  G+ +H H+ R G++  V+++  LVDMY++ GC+  A  VF  +  +++VSW++M+
Sbjct: 198 NHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMI 257

Query: 290 TGYTRHGLHFEALDIFDQMIQEGYE--PDSVALSTLL---SNISSMKFKLHIHGWVIRHG 349
             Y ++G  FEAL  F +M++E  +  P+SV + ++L   +++++++    IHG+++R G
Sbjct: 258 ACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRG 317

Query: 350 VEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSAEALTYFE 409
           ++  L + ++L+ MY +CGKL   + +F +M  +D+VSWNS+IS+   H    +A+  FE
Sbjct: 318 LDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFE 377

Query: 410 VMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRA 469
            M + G SP  VTFVS+L  C+H GLV+EG +L+  M   +GI+P IEHYACMV+L GRA
Sbjct: 378 EMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRA 437

Query: 470 GMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELL 529
             ++EA K++ + M  E GP +WG+LL +C +H +V++AE A+ RLF LEP N  N+ LL
Sbjct: 438 NRLDEAAKMV-QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 497

Query: 530 MKIYGNAGRSEDEKRVKLMMAERGL 543
             IY  A   ++ KRVK ++  RGL
Sbjct: 498 ADIYAEAQMWDEVKRVKKLLEHRGL 519

[Close]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match: sp|P0C899|PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-77
Identity = 165/486 (33.95%), Postives = 255/486 (52.47%), Query Frame = 0 

Query: 131 IHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAEL 190
           +H  I    LR N  +  KL+R YAS   +  A +VFDE+  RN      N +I  Y   
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN--VIIINVMIRSYVNN 120

Query: 191 GLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVL 250
           G Y + + ++  M    V PD++TFP VLKAC   G+I IG  +H    + G +  +FV 
Sbjct: 121 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 180

Query: 251 NALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYT--------------------- 310
           N LV MY KCG +  AR V D++  +D+VSWNS++ GY                      
Sbjct: 181 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 240

Query: 311 -----------------------------------------------RHGLHFEALDIFD 370
                                                          ++ +  EA++++ 
Sbjct: 241 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 300

Query: 371 QMIQEGYEPDSVALSTLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCG 430
           +M  +G+EPD+V+++++L    + S++     IHG++ R  +  NL + N+LI MYAKCG
Sbjct: 301 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 360

Query: 431 KLNRAKWLFQQMPQKDMVSWNSIISAHFNS---AEALTYFEVMESLGVSPDGVTFVSLLS 490
            L +A+ +F+ M  +D+VSW ++ISA+  S    +A+  F  ++  G+ PD + FV+ L+
Sbjct: 361 CLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLA 420

Query: 491 TCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAG 543
            C+H GL++EG   + LM   Y I P +EH ACMV+L GRAG ++EAY+ I + M +E  
Sbjct: 421 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI-QDMSMEPN 480

[Close]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match: sp|Q9LUL5|PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-76
Identity = 161/480 (33.54%), Postives = 274/480 (57.08%), Query Frame = 0 

Query: 72  PTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFID-PEIFSSLLELCYQLQAIHHGIR 131
           P    +  KP   SK   LD  +T +E S  +   +  PE ++ LL  C   +++HHGI+
Sbjct: 93  PWRQFVFTKPLGLSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIK 152

Query: 132 IHRLIPTN-LLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRN-FSAFAWNSLISGYA 191
           I  LI  N  LR N  + SKL+ L++    ++ A ++FD++ + +  +   W ++  GY+
Sbjct: 153 ICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYS 212

Query: 192 ELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVF 251
             G   DAL +Y  M    +EP NF+    LKAC  +  +++G  +H  +V+     D  
Sbjct: 213 RNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQV 272

Query: 252 VLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEG 311
           V N L+ +Y + G    ARKVFD +  +++V+WNS+++  ++     E  ++F +M +E 
Sbjct: 273 VYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEM 332

Query: 312 YEPDSVALSTLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAK 371
                  L+T+L   S ++++     IH  +++   + ++ + NSL+ MY KCG++  ++
Sbjct: 333 IGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSR 392

Query: 372 WLFQQMPQKDMVSWNSIISAHF---NSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLG 431
            +F  M  KD+ SWN +++ +    N  E +  FE M   GV+PDG+TFV+LLS C+  G
Sbjct: 393 RVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTG 452

Query: 432 LVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGA 491
           L + G  L+  MK ++ + P +EHYAC+V++ GRAG I+EA K+I + M  +   +IWG+
Sbjct: 453 LTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVI-ETMPFKPSASIWGS 512

Query: 492 LLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGL 543
           LL +C LH +V + EIAA+ LF LEP N  N+ ++  IY +A   ++  +++ MM +RG+
Sbjct: 513 LLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGV 571

[Close]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match: sp|O81767|PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-76
Identity = 158/452 (34.96%), Postives = 263/452 (58.19%), Query Frame = 0 

Query: 100 SIDNGL-FIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFG 159
           ++ NGL  +D     SLL  C +    + G+ IH     + L   + +S+KL+ LYA FG
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 160 YMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRV 219
            + D  +VFD M  R+    +WNS+I  Y        A++L+ +M    ++PD  T   +
Sbjct: 297 RLRDCQKVFDRMYVRDL--ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 356

Query: 220 LKACGGIGSIQIGEAVHRHVVRSG-FAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKD 279
                 +G I+   +V    +R G F  D+ + NA+V MY+K G +  AR VF+ +   D
Sbjct: 357 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 416

Query: 280 IVSWNSMLTGYTRHGLHFEALDIFDQMIQEG----YEPDSVALSTLLSNISSMKFKLHIH 339
           ++SWN++++GY ++G   EA+++++ M +EG     +   V++    S   +++  + +H
Sbjct: 417 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 476

Query: 340 GWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISA---HFNSA 399
           G ++++G+  ++ +  SL  MY KCG+L  A  LF Q+P+ + V WN++I+    H +  
Sbjct: 477 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 536

Query: 400 EALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACM 459
           +A+  F+ M   GV PD +TFV+LLS C+H GLV EG   + +M+  YGI P+++HY CM
Sbjct: 537 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 596

Query: 460 VNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDN 519
           V++YGRAG +E A K I K M ++   +IWGALL AC +H +VD+ +IA+E LFE+EP++
Sbjct: 597 VDMYGRAGQLETALKFI-KSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 656

Query: 520 ELNFELLMKIYGNAGRSEDEKRVKLMMAERGL 543
                LL  +Y +AG+ E    ++ +   +GL
Sbjct: 657 VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685

[Close]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match: tr|A0A0A0L5M0|A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 1035.0 bits (2675), Expect = 5.9e-299
Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0 

Query: 1   MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 60
           MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK
Sbjct: 1   MNDHFPLLLQRFVFPMLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAK 60

Query: 61  QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 120
           QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY
Sbjct: 61  QSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCY 120

Query: 121 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 180
           QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW
Sbjct: 121 QLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAW 180

Query: 181 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 240
           NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR
Sbjct: 181 NSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 240

Query: 241 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 300
           SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI
Sbjct: 241 SGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDI 300

Query: 301 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 360
           FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK
Sbjct: 301 FDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGK 360

Query: 361 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 420
           LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH
Sbjct: 361 LNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAH 420

Query: 421 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 480
           LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW
Sbjct: 421 LGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIW 480

Query: 481 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 540
           GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER
Sbjct: 481 GALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAER 540

Query: 541 GLNS 545
           GLNS
Sbjct: 541 GLNS 544

[Close]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match: tr|A0A1S4DSF7|A0A1S4DSF7_CUCME (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990382 PE=4 SV=1)

HSP 1 Score: 953.7 bits (2464), Expect = 1.7e-274
Identity = 503/529 (95.09%), Postives = 511/529 (96.60%), Query Frame = 0 

Query: 16  MLISLHLLXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLLRISKAKQSTDLSFPKSSPTPL 75
           MLISL LL  XXXXXXXXXXXXXXXXXXXXXXXX QKLLRISKAKQSTDLSFPKSS TPL
Sbjct: 1   MLISLQLLTPXXXXXXXXXXXXXXXXXXXXXXXXHQKLLRISKAKQSTDLSFPKSSSTPL 60

Query: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135
           LIH KPFFQSKIQALDAVLTDLE SIDNGL IDPEIFSSLLELCYQL+AIHHGIRIHRLI
Sbjct: 61  LIHSKPFFQSKIQALDAVLTDLETSIDNGLLIDPEIFSSLLELCYQLRAIHHGIRIHRLI 120

Query: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195
           PTNLLRRNVGISSKLLRLYAS GYMEDAHQVFDEMG RNFSAFAWNSLISGYAELGLYED
Sbjct: 121 PTNLLRRNVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYED 180

Query: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD 255
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD
Sbjct: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD 240

Query: 256 MYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVA 315
           MYSKCGCIVRARKVFDQI YKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGY+PDSVA
Sbjct: 241 MYSKCGCIVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVA 300

Query: 316 LSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD 375
           LSTLLSNI S+KFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD
Sbjct: 301 LSTLLSNILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKD 360

Query: 376 MVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMK 435
           MVSWNSIISAHFN+ EALTYFEVMESLGV PD VTFVSLLSTCAHLGLVKEGG+LY LMK
Sbjct: 361 MVSWNSIISAHFNTTEALTYFEVMESLGVLPDRVTFVSLLSTCAHLGLVKEGGRLYSLMK 420

Query: 436 GKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDI 495
           GKY IRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLH +VDI
Sbjct: 421 GKYRIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHRNVDI 480

Query: 496 AEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS 545
           AEIAAERLFELEPDNELNFELLMKIYGNAGRS+DEKRVKLMMAERGLNS
Sbjct: 481 AEIAAERLFELEPDNELNFELLMKIYGNAGRSDDEKRVKLMMAERGLNS 529

[Close]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match: tr|A0A2I4E8X3|A0A2I4E8X3_9ROSI (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Juglans regia OX=51240 GN=LOC108987389 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 7.2e-204
Identity = 346/492 (70.33%), Postives = 413/492 (83.94%), Query Frame = 0 

Query: 52  KLLRISKAKQSTDLSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEI 111
           K  RI + K +T LSFP S+PTPLLI+ KP+ Q+K QALDA++ DLEAS+D  + ID EI
Sbjct: 34  KQKRIHRNK-NTSLSFPNSTPTPLLINQKPYTQTKAQALDAIVDDLEASVDKRIKIDTEI 93

Query: 112 FSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMG 171
           FSSLLE CY+LQAI HGIR+HRLIP NLLRRN G+SSKLLRLYAS G +E AHQVFD+M 
Sbjct: 94  FSSLLETCYRLQAIDHGIRVHRLIPPNLLRRNAGLSSKLLRLYASCGRIEKAHQVFDQMV 153

Query: 172 NRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 231
           +R+ SAF WNSLISGYAELGLYEDA+ALYFQM+EEGVEPD FTFPRVLKACGGIGS  +G
Sbjct: 154 DRDASAFPWNSLISGYAELGLYEDAMALYFQMDEEGVEPDPFTFPRVLKACGGIGSFGVG 213

Query: 232 EAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRH 291
           E VHR VVRSGFA D FVLNALVDMY+KCG IV+ARKVFD+I  +D+VSWN+MLTGY RH
Sbjct: 214 EEVHRRVVRSGFANDGFVLNALVDMYAKCGDIVKARKVFDKIASRDLVSWNAMLTGYIRH 273

Query: 292 GLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSL 351
           GL  EAL+IF QM+QEG+EPDSVA+ST+L+++SS+K  L IHGW++R G EW+LS+ANSL
Sbjct: 274 GLLVEALEIFCQMLQEGHEPDSVAISTILASLSSLKLTLQIHGWILRQGFEWDLSVANSL 333

Query: 352 IVMYAKCGKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTF 411
           I +Y+  GKL+RA+WLF  MP++D+VSWNSIISAH    E LTYFE ME+ G  PD +TF
Sbjct: 334 IAVYSNHGKLDRAQWLFNHMPERDVVSWNSIISAHSRDLEVLTYFEQMENSGTLPDSITF 393

Query: 412 VSLLSTCAHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGM 471
           VSLLS CAHLGLVK+G +LY +MKGKY I P +EHYACMVNLYGRAG++ EAY +I + M
Sbjct: 394 VSLLSACAHLGLVKDGERLYSMMKGKYAINPIMEHYACMVNLYGRAGLLMEAYAVIEEKM 453

Query: 472 EIEAGPTIWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEK 531
           E EAGPT WGALLYAC+LH +VDI E+AAE+LFELEPDNELN+ELL+ IY NAGR +  +
Sbjct: 454 EFEAGPTAWGALLYACFLHGNVDIGEVAAEKLFELEPDNELNYELLINIYSNAGRLDGVE 513

Query: 532 RVKLMMAERGLN 544
           RV++MM ERGL+
Sbjct: 514 RVRMMMMERGLD 524

[Close]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match: tr|A0A2P6SMD5|A0A2P6SMD5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0374811 PE=4 SV=1)

HSP 1 Score: 708.0 bits (1826), Expect = 1.7e-200
Identity = 339/486 (69.75%), Postives = 407/486 (83.74%), Query Frame = 0 

Query: 60  KQSTD-LSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLEL 119
           KQST  LSF  SSP PL+I+ KP  Q+K+QAL+A++ DLEAS +NG+ +D E F+SLLE 
Sbjct: 35  KQSTKLLSFSNSSPAPLIIYQKPQTQTKLQALEAIIKDLEASSENGIDVDTETFASLLET 94

Query: 120 CYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAF 179
           CY+L A+ + +R+HRLIP NLLRRNVG+SSKLLRLYAS GY+E+AHQVFD+M  R+ SAF
Sbjct: 95  CYKLDAMDYCLRVHRLIPRNLLRRNVGLSSKLLRLYASCGYVEEAHQVFDQMPKRDVSAF 154

Query: 180 AWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHV 239
           AWNSLISGYAELGLYEDA+ALYFQMEEEGVEPD FTFPRVLKACGGIG +QIGEAVHRH 
Sbjct: 155 AWNSLISGYAELGLYEDAMALYFQMEEEGVEPDRFTFPRVLKACGGIGFVQIGEAVHRHA 214

Query: 240 VRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEAL 299
           VR GF GD FVLNALVDMY+KCG IV+ARKVFD+I  +D VSWN+MLT Y RHGL  +AL
Sbjct: 215 VRLGFVGDRFVLNALVDMYAKCGDIVKARKVFDKIGSRDKVSWNTMLTAYMRHGLLLQAL 274

Query: 300 DIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKC 359
           DIF QMI+EGY+PDSV +ST+L+ + S++  + IHGW IR GVEWNLSIANSLI  Y+  
Sbjct: 275 DIFHQMIREGYQPDSVTISTVLTAVPSLELVVQIHGWTIRQGVEWNLSIANSLIAAYSNH 334

Query: 360 GKLNRAKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTC 419
           GKL RA+WLF QMP++D+V+WN+IISAH  S EAL YFE MES G  PD +TFVS+LS C
Sbjct: 335 GKLKRARWLFCQMPERDVVTWNTIISAHSKSREALVYFEQMESAGALPDAITFVSILSVC 394

Query: 420 AHLGLVKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPT 479
           AHLGLVK+G +L+  MK +Y I P +EHYACMVNLYGRAG+I+EAY II +GME EAGPT
Sbjct: 395 AHLGLVKDGERLFSTMKNRYRISPIMEHYACMVNLYGRAGLIKEAYGIIMEGMEFEAGPT 454

Query: 480 IWGALLYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMA 539
           +WGALLYACYL+ + +I E+AAERLF+LEPDNE NFELLMKIYGN GR ++ +RV++MM 
Sbjct: 455 VWGALLYACYLYGNAEIGEVAAERLFDLEPDNEYNFELLMKIYGNVGRLDNVERVRMMMV 514

Query: 540 ERGLNS 545
           +RGL+S
Sbjct: 515 DRGLDS 520

[Close]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match: tr|M5XGA4|M5XGA4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280000 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 4.5e-198
Identity = 339/480 (70.62%), Postives = 399/480 (83.12%), Query Frame = 0 

Query: 65  LSFPKSSPTPLLIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQA 124
           LSFPK+ PTPL+I  KP  Q+K+QALDAV+ DLEA+I  G+ +D E F+SLLE CYQ QA
Sbjct: 40  LSFPKTIPTPLIICHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQA 99

Query: 125 IHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLI 184
           + +G+R+HRLIP ++LRRNVGISSKLLRLYAS GY+E+AHQVFDEM  R+ SAFAWNSLI
Sbjct: 100 MDYGLRVHRLIPRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLI 159

Query: 185 SGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFA 244
           SGYAELGLYEDA+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEAVHRH+VR G  
Sbjct: 160 SGYAELGLYEDAMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEAVHRHIVRLGLL 219

Query: 245 GDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQM 304
            D FVLNALVDMY+KCG IV+ARKVFD+I  +D VSWN+MLT Y RHGL  +ALDIF +M
Sbjct: 220 NDRFVLNALVDMYAKCGDIVKARKVFDKITSRDHVSWNTMLTSYMRHGLLSQALDIFHEM 279

Query: 305 IQEGYEPDSVALSTLLSNI-SSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNR 364
           + EG++ DSVA+ST+L    SS++  + IHGWVIR GVEWNLSIAN+LI  Y+   KLNR
Sbjct: 280 LHEGHQADSVAISTILGAAESSLEIVIQIHGWVIRQGVEWNLSIANALIAAYSNHRKLNR 339

Query: 365 AKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGL 424
           A+WLF  M ++D+++WN++ISAH  S EAL +FE MES G  PD +TFVS+LSTCAHLGL
Sbjct: 340 ARWLFCHMSERDVITWNTMISAHSKSPEALLFFEQMESSGALPDSITFVSILSTCAHLGL 399

Query: 425 VKEGGKLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGAL 484
           VK+G +LY +MK +Y I P +EHYACMVNLYGRAG I EAY II  GME EAGPT+WGAL
Sbjct: 400 VKDGERLYSVMKNRYRISPIMEHYACMVNLYGRAGRIREAYGIIVDGMEFEAGPTVWGAL 459

Query: 485 LYACYLHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLN 544
           LYACYLH +VDI E+AAERLFELEPDNE NFELL+KIYGN GR ED +RV+LMM ERGL+
Sbjct: 460 LYACYLHGNVDIGEVAAERLFELEPDNEYNFELLIKIYGNVGRLEDVERVRLMMVERGLD 519

The following BLAST results are available for this feature:
BLAST of CsaV3_3G016240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57280.19.0e-299100.00hypothetical protein Csa_3G176270 [Cucumis sativus][more]
XP_011652769.19.0e-299100.00PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
XP_016898932.12.6e-27495.09PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
XP_022942651.11.5e-24584.18pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita ... [more]
XP_023549868.15.7e-24583.57pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita ... [more]
BLAST of CsaV3_3G016240 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25270.15.2e-18463.35Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G46790.17.0e-8837.53Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G49142.11.3e-7833.95Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G14330.11.5e-7733.54Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G33990.11.5e-7734.96Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_3G016240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SB36|PP337_ARATH9.4e-18363.35Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop... [more]
sp|Q9STF3|PP265_ARATH1.3e-8637.53Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
sp|P0C899|PP271_ARATH2.4e-7733.95Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
sp|Q9LUL5|PP229_ARATH2.6e-7633.54Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana OX... [more]
sp|O81767|PP348_ARATH2.6e-7634.96Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX... [more]
BLAST of CsaV3_3G016240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5M0|A0A0A0L5M0_CUCSA5.9e-299100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1[more]
tr|A0A1S4DSF7|A0A1S4DSF7_CUCME1.7e-27495.09pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis ... [more]
tr|A0A2I4E8X3|A0A2I4E8X3_9ROSI7.2e-20470.33pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Juglans ... [more]
tr|A0A2P6SMD5|A0A2P6SMD5_ROSCH1.7e-20069.75Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
tr|M5XGA4|M5XGA4_PRUPE4.5e-19870.63Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280000 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009451 RNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0055086 nucleobase-containing small molecule metabolic process
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0072528 pyrimidine-containing compound biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006221 pyrimidine nucleotide biosynthetic process
biological_process GO:0008380 RNA splicing
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0009041 uridylate kinase activity
molecular_function GO:0004127 cytidylate kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0019201 nucleotide kinase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0019205 nucleobase-containing compound kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016240.1CsaV3_3G016240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 86..236
e-value: 3.5E-24
score: 87.7
coord: 348..543
e-value: 7.3E-33
score: 116.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 275..329
e-value: 6.4E-7
score: 31.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 239..311
coord: 178..203
coord: 447..524
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 178..222
e-value: 2.6E-10
score: 40.2
coord: 276..321
e-value: 4.1E-10
score: 39.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 150..174
e-value: 0.016
score: 15.3
coord: 349..374
e-value: 4.7E-4
score: 20.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 279..313
e-value: 7.0E-9
score: 33.3
coord: 179..211
e-value: 2.7E-9
score: 34.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 397..455
e-value: 0.0012
score: 18.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..173
score: 7.333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 510..544
score: 7.147
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 211..245
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 443..477
score: 7.717
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 344..378
score: 9.493
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..311
score: 13.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..442
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..210
score: 12.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..276
score: 7.947
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 33..543
NoneNo IPR availablePANTHERPTHR24015:SF497SUBFAMILY NOT NAMEDcoord: 33..543

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G016240CSPI03G16040Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016240Cucsa.251540Cucumber (Gy14) v1cgycucB387
CsaV3_3G016240CmaCh04G003290Cucurbita maxima (Rimu)cmacucB0838
CsaV3_3G016240CmoCh04G003460Cucurbita moschata (Rifu)cmocucB0823
CsaV3_3G016240Cp4.1LG01g03750Cucurbita pepo (Zucchini)cpecucB0492
CsaV3_3G016240CsGy3G016120Cucumber (Gy14) v2cgybcucB117
CsaV3_3G016240Carg08007Silver-seed gourdcarcucB0404
CsaV3_3G016240Cla006263Watermelon (97103) v1cucwmB239
CsaV3_3G016240MELO3C031784.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016240Cla97C05G089210Watermelon (97103) v2cucwmbB206
CsaV3_3G016240Bhi01G000903Wax gourdcucwgoB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016240Watermelon (Charleston Gray)cucwcgB212
CsaV3_3G016240Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016240Watermelon (97103) v1cucwmB271
CsaV3_3G016240Watermelon (97103) v2cucwmbB179
CsaV3_3G016240Cucumber (Chinese Long) v3cuccucB125
CsaV3_3G016240Silver-seed gourdcarcucB0909
CsaV3_3G016240Silver-seed gourdcarcucB0956
CsaV3_3G016240Cucumber (Gy14) v2cgybcucB216
CsaV3_3G016240Cucumber (Gy14) v1cgycucB466
CsaV3_3G016240Cucurbita maxima (Rimu)cmacucB0332
CsaV3_3G016240Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016240Cucurbita maxima (Rimu)cmacucB0711
CsaV3_3G016240Cucurbita maxima (Rimu)cmacucB0719
CsaV3_3G016240Cucurbita moschata (Rifu)cmocucB0327
CsaV3_3G016240Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016240Cucurbita moschata (Rifu)cmocucB0697
CsaV3_3G016240Cucurbita moschata (Rifu)cmocucB0706
CsaV3_3G016240Cucurbita pepo (Zucchini)cpecucB0200
CsaV3_3G016240Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016240Cucurbita pepo (Zucchini)cpecucB0896
CsaV3_3G016240Cucurbita pepo (Zucchini)cpecucB0903
CsaV3_3G016240Wild cucumber (PI 183967)cpicucB268
CsaV3_3G016240Bottle gourd (USVL1VR-Ls)cuclsiB171
CsaV3_3G016240Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016240Melon (DHL92) v3.5.1cucmeB165
CsaV3_3G016240Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016240Melon (DHL92) v3.6.1cucmedB154