Cp4.1LG01g03750 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03750
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG01 : 1638678 .. 1640267 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATCTCTTTGCGATTCTCAATTTCACCCATTACTTCGCTTCGTCCCTTCTGTTCTTCCGGACCCAAGAAATCCAAGAAAGAAAGAAAGAAACTTCTTCAGGAAAAACTGATTCGCATAAGCAAAGCCAAAGAGGCCACTCGTCTCCCTTTCCCTAAATCCTCATCAACCCCACTCTTAATCCACCACAAACCCTTCTCCCAATCCAAGATTCAAGCCCTTGATGCTGTTCTCAATGACCTTGAAGCTTCCCTCCACAATGGCGTCCCAATCGATGCTGAAATTTTCTCTTCCCTTTTGGAAACTTGTTACCAATTGCGAGCCCTTGATCATGGTATTCGGATTCATCGCCTAATACCCACCAATTTTTTACGAAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTTGATGAAATGTGTCAACGAAATCTCTCTGCATTTTCTTGGAATTCTCTTATTTCTGGCTATGCTGAACTTGGTCTTTATGAAGATGCTCTGGCTCTCTACTTCCAAATGGAGGAAGAGGGTGTTGAGCCTGACCATTTCACTTTTCCTCGTGTACTCAAGGCCTGTGGTGGCATTGGGTCGATTCGAGTCGGGGAGGGAGTGCACCGGCATATCGTTCGTTCGGGATTTGCTGGCGACATCTTCGTCCTCAATGCTCTAGTTGACATGTATGCCAAATGTGGTGACATTATGAGGGCTAGGAAAGTTTTTGATCAAATTGTTCATAAGGATACAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTGCTCTTGGAGGCATTGAACACCTTTGATCAAATGATTCAAGAAGGTTACGAGCCAGATTCGGTTGCTTTATCCACCATGATCTCTAACATCTCGTCGTCGAAATTCAAGTTACACATCCACGGATGGGCGATTCGACACGGAATCGAATGGAATTTGTCGATTGTCAACTCTTTGATTGCCATGTATGCCAACTCTGGTAAGATCAACAGAGCAAGATGGCTGTTCGAGCAGATGCCTGAACGAGATATAGTGTCATGGAACACCATAATCTCTGCTCATTCCAACACCTCAAAAGCATTGACATATTTTGAGGTGATGGAGAGCCTTGGTTTTTTGCCAGACAGTGTAACATTTGTGTCATTACTGTCAACTTGTGCTCATCTGAGCTTAGTGAAGGAAGGGGGAAAGTTATATTCTGTGATGAAAGGGAAATATGGAATAAGACCAACCATAGAACACTATGCTTGCATGGTGAATCTTTATGGGAGGGCAGGGCTGATTGAAGAAGCTTATAGAATCATAACGAACGGGATGGAGGTCGAGGCAGGCCCGACCGTATGGGGGGCGCTGTTGTATGCATGCTATCTTCATGGCAATGTCGATATCGCCGAGGTTGCTGCTGAAAAGCTTTTTGAATCGGAGCCCGATAATGAGCTCAATTTCAAGCTTCTGATGAAGATTTATGGCAATGCTGGGAGGATTGAAGATGAGAAGAGGGTGAGATTAATGATGGCGGAACGAGGATTAGATTTGTAA

mRNA sequence

ATGCTGATCTCTTTGCGATTCTCAATTTCACCCATTACTTCGCTTCGTCCCTTCTGTTCTTCCGGACCCAAGAAATCCAAGAAAGAAAGAAAGAAACTTCTTCAGGAAAAACTGATTCGCATAAGCAAAGCCAAAGAGGCCACTCGTCTCCCTTTCCCTAAATCCTCATCAACCCCACTCTTAATCCACCACAAACCCTTCTCCCAATCCAAGATTCAAGCCCTTGATGCTGTTCTCAATGACCTTGAAGCTTCCCTCCACAATGGCGTCCCAATCGATGCTGAAATTTTCTCTTCCCTTTTGGAAACTTGTTACCAATTGCGAGCCCTTGATCATGGTATTCGGATTCATCGCCTAATACCCACCAATTTTTTACGAAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTTGATGAAATGTGTCAACGAAATCTCTCTGCATTTTCTTGGAATTCTCTTATTTCTGGCTATGCTGAACTTGGTCTTTATGAAGATGCTCTGGCTCTCTACTTCCAAATGGAGGAAGAGGGTGTTGAGCCTGACCATTTCACTTTTCCTCGTGTACTCAAGGCCTGTGGTTACGAGCCAGATTCGGTTGCTTTATCCACCATGATCTCTAACATCTCGTCGTCGAAATTCAAGTTACACATCCACGGATGGGCGATTCGACACGGAATCGAATGGAATTTGTCGATTGTCAACTCTTTGATTGCCATGTATGCCAACTCTGGTAAGATCAACAGAGCAAGATGGCTGTTCGAGCAGATGCCTGAACGAGATATAGTGTCATGGAACACCATAATCTCTGCTCATTCCAACACCTCAAAAGCATTGACATATTTTGAGGTGATGGAGAGCCTTGGTTTTTTGCCAGACAGTGTAACATTTGTGTCATTACTGTCAACTTGTGCTCATCTGAGCTTAGTGAAGGAAGGGGGAAAGTTATATTCTGTGATGAAAGGGAAATATGGAATAAGACCAACCATAGAACACTATGCTTGCATGGTGAATCTTTATGGGAGGGCAGGGCTGATTGAAGAAGCTTATAGAATCATAACGAACGGGATGGAGGTCGAGGCAGGCCCGACCGTATGGGGGGCGCTGTTGTATGCATGCTATCTTCATGGCAATGTCGATATCGCCGAGGTTGCTGCTGAAAAGCTTTTTGAATCGGAGCCCGATAATGAGCTCAATTTCAAGCTTCTGATGAAGATTTATGGCAATGCTGGGAGGATTGAAGATGAGAAGAGGGTGAGATTAATGATGGCGGAACGAGGATTAGATTTGTAA

Coding sequence (CDS)

ATGCTGATCTCTTTGCGATTCTCAATTTCACCCATTACTTCGCTTCGTCCCTTCTGTTCTTCCGGACCCAAGAAATCCAAGAAAGAAAGAAAGAAACTTCTTCAGGAAAAACTGATTCGCATAAGCAAAGCCAAAGAGGCCACTCGTCTCCCTTTCCCTAAATCCTCATCAACCCCACTCTTAATCCACCACAAACCCTTCTCCCAATCCAAGATTCAAGCCCTTGATGCTGTTCTCAATGACCTTGAAGCTTCCCTCCACAATGGCGTCCCAATCGATGCTGAAATTTTCTCTTCCCTTTTGGAAACTTGTTACCAATTGCGAGCCCTTGATCATGGTATTCGGATTCATCGCCTAATACCCACCAATTTTTTACGAAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCTTTTGGGTACATGGAGGATGCACACCAGGTGTTTGATGAAATGTGTCAACGAAATCTCTCTGCATTTTCTTGGAATTCTCTTATTTCTGGCTATGCTGAACTTGGTCTTTATGAAGATGCTCTGGCTCTCTACTTCCAAATGGAGGAAGAGGGTGTTGAGCCTGACCATTTCACTTTTCCTCGTGTACTCAAGGCCTGTGGTTACGAGCCAGATTCGGTTGCTTTATCCACCATGATCTCTAACATCTCGTCGTCGAAATTCAAGTTACACATCCACGGATGGGCGATTCGACACGGAATCGAATGGAATTTGTCGATTGTCAACTCTTTGATTGCCATGTATGCCAACTCTGGTAAGATCAACAGAGCAAGATGGCTGTTCGAGCAGATGCCTGAACGAGATATAGTGTCATGGAACACCATAATCTCTGCTCATTCCAACACCTCAAAAGCATTGACATATTTTGAGGTGATGGAGAGCCTTGGTTTTTTGCCAGACAGTGTAACATTTGTGTCATTACTGTCAACTTGTGCTCATCTGAGCTTAGTGAAGGAAGGGGGAAAGTTATATTCTGTGATGAAAGGGAAATATGGAATAAGACCAACCATAGAACACTATGCTTGCATGGTGAATCTTTATGGGAGGGCAGGGCTGATTGAAGAAGCTTATAGAATCATAACGAACGGGATGGAGGTCGAGGCAGGCCCGACCGTATGGGGGGCGCTGTTGTATGCATGCTATCTTCATGGCAATGTCGATATCGCCGAGGTTGCTGCTGAAAAGCTTTTTGAATCGGAGCCCGATAATGAGCTCAATTTCAAGCTTCTGATGAAGATTTATGGCAATGCTGGGAGGATTGAAGATGAGAAGAGGGTGAGATTAATGATGGCGGAACGAGGATTAGATTTGTAA

Protein sequence

MLISLRFSISPITSLRPFCSSGPKKSKKERKKLLQEKLIRISKAKEATRLPFPKSSSTPLLIHHKPFSQSKIQALDAVLNDLEASLHNGVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLFEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLDL

Homology

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BLAST of Cp4.1LG01g03750 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 5.8e-90
Identity = 168/356 (47.19%), Postives = 232/356 (65.17%), Query Frame = 1


Query: 88  NGVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMED 147
           +GV  D   F  +L+ C  + ++  G  IHR +       +V V + L+ +YA  G +  
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248

Query: 148 AHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKAC 207
           A  VFD +  ++    SWNS+++GY   GL  +AL ++  M + G+              
Sbjct: 249 ARNVFDMIPHKDY--VSWNSMLTGYLHHGLLHEALDIFRLMVQNGI-------------- 308

Query: 208 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 267
             EPD VA+S++++ + S K    +HGW IR G+EW LS+ N+LI +Y+  G++ +A ++
Sbjct: 309 --EPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFI 368

Query: 268 FEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEG 327
           F+QM ERD VSWN IISAHS  S  L YFE M      PD +TFVS+LS CA+  +V++G
Sbjct: 369 FDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDG 428

Query: 328 GKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYAC 387
            +L+S+M  +YGI P +EHYACMVNLYGRAG++EEAY +I   M +EAGPTVWGALLYAC
Sbjct: 429 ERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYAC 488

Query: 388 YLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           YLHGN DI EVAA++LFE EPDNE NF+LL++IY  A R ED +RVR MM +RGL+
Sbjct: 489 YLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLE 526

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BLAST of Cp4.1LG01g03750 vs. Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-59
Identity = 129/358 (36.03%), Postives = 201/358 (56.15%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           G+  D    +++L  C + R LD G R+H  I  N L  ++ VS+ L+ +YA  G M++A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALY-FQMEEEGVEPDHFTFPRVLKAC 208
             VF EM  +++   SWN++I GY++     +AL+L+   +EE+   PD  T   VL AC
Sbjct: 452 ELVFSEMRVKDI--ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 511

Query: 209 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
                        +++S+      IHG+ +R+G   +  + NSL+ MYA  G +  A  L
Sbjct: 512 -------------ASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 571

Query: 269 FEQMPERDIVSWNTIISA---HSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLV 328
           F+ +  +D+VSW  +I+    H    +A+  F  M   G   D ++FVSLL  C+H  LV
Sbjct: 572 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 631

Query: 329 KEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALL 388
            EG + +++M+ +  I PT+EHYAC+V++  R G + +AYR I N M +    T+WGALL
Sbjct: 632 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIEN-MPIPPDATIWGALL 691

Query: 389 YACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
             C +H +V +AE  AEK+FE EP+N   + L+  IY  A + E  KR+R  + +RGL
Sbjct: 692 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733

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BLAST of Cp4.1LG01g03750 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-58
Identity = 132/363 (36.36%), Postives = 208/363 (57.30%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQ----LRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGY 148
           GV  D   ++ +L+ C      +  L  G  IH  +       +V + + L+ +YA FG 
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232

Query: 149 MEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQM--EEEGVEPDHFTFPR 208
           ++ A  VF  M  RN+   SW+++I+ YA+ G   +AL  + +M  E +   P+  T   
Sbjct: 233 VDYASYVFGGMPVRNV--VSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVS 292

Query: 209 VLKACGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKIN 268
           VL+AC            ++ +   K    IHG+ +R G++  L ++++L+ MY   GK+ 
Sbjct: 293 VLQACA----------SLAALEQGKL---IHGYILRRGLDSILPVISALVTMYGRCGKLE 352

Query: 269 RARWLFEQMPERDIVSWNTIISA---HSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCA 328
             + +F++M +RD+VSWN++IS+   H    KA+  FE M + G  P  VTFVS+L  C+
Sbjct: 353 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACS 412

Query: 329 HLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTV 388
           H  LV+EG +L+  M   +GI+P IEHYACMV+L GRA  ++EA +++ + M  E GP V
Sbjct: 413 HEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQD-MRTEPGPKV 472

Query: 389 WGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAE 443
           WG+LL +C +HGNV++AE A+ +LF  EP N  N+ LL  IY  A   ++ KRV+ ++  
Sbjct: 473 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 519

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BLAST of Cp4.1LG01g03750 vs. Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-56
Identity = 125/389 (32.13%), Postives = 201/389 (51.67%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D      L+ +C  L  L+ G   +  +  N LR  + + + L+ +++  G + +A
Sbjct: 252 GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEA 311

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLY------------------------------ 208
            ++FD + +R +   SW ++ISGYA  GL                               
Sbjct: 312 RRIFDNLEKRTI--VSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKR 371

Query: 209 -EDALALYFQMEEEGVEPDHFTFPRVLKACGYEPDSVALSTMISNISSSKFKLHIHGWAI 268
            +DALAL+ +M+    +PD  T    L AC             S + +    + IH +  
Sbjct: 372 GQDALALFQEMQTSNTKPDEITMIHCLSAC-------------SQLGALDVGIWIHRYIE 431

Query: 269 RHGIEWNLSIVNSLIAMYANSGKINRARWLFEQMPERDIVSWNTII---SAHSNTSKALT 328
           ++ +  N+++  SL+ MYA  G I+ A  +F  +  R+ +++  II   + H + S A++
Sbjct: 432 KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAIS 491

Query: 329 YFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLY 388
           YF  M   G  PD +TF+ LLS C H  +++ G   +S MK ++ + P ++HY+ MV+L 
Sbjct: 492 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLL 551

Query: 389 GRAGLIEEAYRIITNGMEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNF 444
           GRAGL+EEA R++   M +EA   VWGALL+ C +HGNV++ E AA+KL E +P +   +
Sbjct: 552 GRAGLLEEADRLM-ESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIY 611

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BLAST of Cp4.1LG01g03750 vs. Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-56
Identity = 121/358 (33.80%), Postives = 198/358 (55.31%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHR-LIPTNFLRRNVGVSSKLLRLYASFGYMED 148
           G+ +D   F S+L  C  L A++ G +IH  +I TNF + ++ V S L+ +Y     +  
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF-QDHIYVGSALIDMYCKCKCLHY 324

Query: 149 AHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKAC 208
           A  VFD M Q+N+   SW +++ GY + G  E+A+ ++  M+  G++PDH+T  + + AC
Sbjct: 325 AKTVFDRMKQKNV--VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 384

Query: 209 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
                        +N+SS +     HG AI  G+   +++ NSL+ +Y   G I+ +  L
Sbjct: 385 -------------ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 444

Query: 269 FEQMPERDIVSWNTIISAHSNTSKA---LTYFEVMESLGFLPDSVTFVSLLSTCAHLSLV 328
           F +M  RD VSW  ++SA++   +A   +  F+ M   G  PD VT   ++S C+   LV
Sbjct: 445 FNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLV 504

Query: 329 KEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALL 388
           ++G + + +M  +YGI P+I HY+CM++L+ R+G +EEA R I NGM        W  LL
Sbjct: 505 EKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI-NGMPFPPDAIGWTTLL 564

Query: 389 YACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
            AC   GN++I + AAE L E +P +   + LL  IY + G+ +   ++R  M E+ +
Sbjct: 565 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605

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BLAST of Cp4.1LG01g03750 vs. TrEMBL
Match: A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 7.0e-127
Identity = 227/355 (63.94%), Postives = 279/355 (78.59%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  + ++  G  +HR +  +    +V V + L+ +Y+  G +  A
Sbjct: 207 GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 266

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  +++   SWNS+++GY   GL+ +AL ++ QM +E                G
Sbjct: 267 RKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQE----------------G 326

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           YEPDSVALST++SNISS KFKLHIHGW IRHG+EWNLSI NSLI MYA  GK+NRA+WLF
Sbjct: 327 YEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 386

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           +QMP++D+VSWN+IISAH N+++ALTYFEVMESLG  PD VTFVSLLSTCAHL LVKEGG
Sbjct: 387 QQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGG 446

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           KLY +MKGKYGIRPTIEHYACMVNLYGRAG+IEEAY+IIT GME+EAGPT+WGALLYACY
Sbjct: 447 KLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACY 506

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           LH +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR EDEKRV+LMMAERGL+
Sbjct: 507 LHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLN 543

[Close]

BLAST of Cp4.1LG01g03750 vs. TrEMBL
Match: M5XGA4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019039mg PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 2.4e-103
Identity = 197/356 (55.34%), Postives = 248/356 (69.66%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  +  +  G  +HR I    L  +  V + L+ +YA  G +  A
Sbjct: 182 GVEPDRFTFPRVLKACGGIGFIQIGEAVHRHIVRLGLLNDRFVLNALVDMYAKCGDIVKA 241

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  R+    SWN++++ Y   GL   AL ++ +M  EG                
Sbjct: 242 RKVFDKITSRD--HVSWNTMLTSYMRHGLLSQALDIFHEMLHEG---------------- 301

Query: 209 YEPDSVALSTMISNISSS-KFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
           ++ DSVA+ST++    SS +  + IHGW IR G+EWNLSI N+LIA Y+N  K+NRARWL
Sbjct: 302 HQADSVAISTILGAAESSLEIVIQIHGWVIRQGVEWNLSIANALIAAYSNHRKLNRARWL 361

Query: 269 FEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEG 328
           F  M ERD+++WNT+ISAHS + +AL +FE MES G LPDS+TFVS+LSTCAHL LVK+G
Sbjct: 362 FCHMSERDVITWNTMISAHSKSPEALLFFEQMESSGALPDSITFVSILSTCAHLGLVKDG 421

Query: 329 GKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYAC 388
            +LYSVMK +Y I P +EHYACMVNLYGRAG I EAY II +GME EAGPTVWGALLYAC
Sbjct: 422 ERLYSVMKNRYRISPIMEHYACMVNLYGRAGRIREAYGIIVDGMEFEAGPTVWGALLYAC 481

Query: 389 YLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           YLHGNVDI EVAAE+LFE EPDNE NF+LL+KIYGN GR+ED +RVRLMM ERGLD
Sbjct: 482 YLHGNVDIGEVAAERLFELEPDNEYNFELLIKIYGNVGRLEDVERVRLMMVERGLD 519

[Close]

BLAST of Cp4.1LG01g03750 vs. TrEMBL
Match: B9ICU2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14630g PE=4 SV=2)

HSP 1 Score: 368.2 bits (944), Expect = 1.4e-98
Identity = 188/355 (52.96%), Postives = 247/355 (69.58%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHR-LIPTNFLRRNVGVSSKLLRLYASFGYMED 148
           GV  D   F  +L+ C  +  +  G  +HR L+   F+     V + L+ +YA  G +  
Sbjct: 194 GVEPDQFTFPRVLKACGGIGLIRIGEAVHRDLVRLGFVNDGF-VLNALVDMYAKCGDIVK 253

Query: 149 AHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKAC 208
           A ++FD++  ++  + SWNS+++GY   GL  +AL  +  M  +G+E D           
Sbjct: 254 ARRIFDKIDCKD--SISWNSMLTGYIRHGLIAEALHTFHSMVHDGMELD----------- 313

Query: 209 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
                SVA+ST+++N+SS +  + IHGW +R G+EW+ SI NSLIA+Y+N  K++RARWL
Sbjct: 314 -----SVAVSTILANVSSFEVAVQIHGWIVRRGMEWDFSIANSLIAVYSNGRKLDRARWL 373

Query: 269 FEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEG 328
           F+ MP++DIVSWN+IISAH    KALTYFE+ME  G LPD +TFVSLLS CAHL LVK+G
Sbjct: 374 FDHMPKKDIVSWNSIISAHCKDLKALTYFELMERDGALPDKITFVSLLSACAHLGLVKDG 433

Query: 329 GKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYAC 388
            +L+S+MK KY I P +EHYACMVNLYGRAGLI EAY II + ME EAGPTVWGALLY+C
Sbjct: 434 ERLFSLMKAKYQINPIMEHYACMVNLYGRAGLINEAYAIIRDQMEFEAGPTVWGALLYSC 493

Query: 389 YLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
           YLH NVD  E+AA+ LF+ EPDNE NF+LLMKIY NAGR+ED +RVR MM +RGL
Sbjct: 494 YLHRNVDTGEIAAQYLFDLEPDNEHNFELLMKIYDNAGRLEDAERVRKMMVDRGL 529

[Close]

BLAST of Cp4.1LG01g03750 vs. TrEMBL
Match: A0A068U9U2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020312001 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 8.9e-98
Identity = 180/359 (50.14%), Postives = 241/359 (67.13%), Query Frame = 1


Query: 86  LHNGVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYM 145
           +  G+  D   F  +L+ C  +  +  G  +HR +       +    + L+ +YA  G +
Sbjct: 187 VEEGLEPDRHTFPRVLKACGGIGLIQVGEEVHRHVIRYGFGNDGFALNALVDMYAKCGDI 246

Query: 146 EDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLK 205
             A +VFD +  ++L   SWNS++SGYA   L  +AL ++  M  EG+EPD         
Sbjct: 247 VKARKVFDRIVDKDL--VSWNSMLSGYARHELITEALDIFVSMVREGLEPD--------- 306

Query: 206 ACGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRAR 265
                  SV LS++IS++SSS+    IHGW +RHGIEW+LS  NSLIA Y+N  K+  AR
Sbjct: 307 -------SVTLSSLISSVSSSRLGTQIHGWVLRHGIEWDLSTANSLIAFYSNCNKLEEAR 366

Query: 266 WLFEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVK 325
           WLFE MPE+D++SWN+II AHS  ++AL YFE M      PD++TFVSLLS CA + LV+
Sbjct: 367 WLFEHMPEKDLISWNSIIFAHSRNAEALFYFEQMVEANASPDAITFVSLLSACARMGLVE 426

Query: 326 EGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLY 385
           +G +L+ +M+  YG+RP +EHYACMVNLYGRAGLI+EAY  I N M+ EAGPTVWGALLY
Sbjct: 427 DGQRLFRMMRSDYGVRPIMEHYACMVNLYGRAGLIDEAYDFIVNRMDTEAGPTVWGALLY 486

Query: 386 ACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLDL 445
            CYLHG+VD+AE+AA  LFE EPDNE NF+LLM+IY +AGR +D K+V+ MM ERGL+L
Sbjct: 487 GCYLHGSVDLAEIAATALFELEPDNEHNFELLMRIYVSAGRFDDVKKVKAMMLERGLNL 527

[Close]

BLAST of Cp4.1LG01g03750 vs. TrEMBL
Match: A0A067JQW8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26236 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.2e-97
Identity = 182/354 (51.41%), Postives = 247/354 (69.77%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  L  +  G  +HR I    L  +  V + L+ +YA  G +  A
Sbjct: 189 GVEPDQFTFPRVLKVCGGLGMIQVGEAVHRDIVRLGLANDEFVLNALVDMYAKCGDIVKA 248

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            ++FD++  +   + SWNS+++GY   GL  +ALA++  M + GVE D            
Sbjct: 249 RRIFDKISCK--VSVSWNSMLTGYLRHGLLVEALAIFRSMLQAGVELD------------ 308

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
               SVA+S++++ ++S K  + IHGW +R G+EW+L I NSLI +Y+++GK+++ARWLF
Sbjct: 309 ----SVAISSVLAKVTSLKLGVQIHGWILRRGMEWDLCIANSLIVVYSSNGKLDQARWLF 368

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           + M ERD+VSWN+IISAH    + LTYFE ME  G LPD++TFVS+LS CAHL LV +G 
Sbjct: 369 DNMLERDVVSWNSIISAHHKDPEVLTYFERMEKDGVLPDNITFVSILSACAHLGLVTDGE 428

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           +L+S+M  KYGI+P +EHYACMVNLYGRAGLI++AY II N ME +AGPT WGALLYACY
Sbjct: 429 RLFSLMSEKYGIKPIMEHYACMVNLYGRAGLIKDAYAIIANKMEFDAGPTAWGALLYACY 488

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
           LHGNVDI E+AA+ LFE EPDN+ NF+LLMKIY +AGR+ED K+V+ MM +RGL
Sbjct: 489 LHGNVDIGEIAAQSLFELEPDNKHNFELLMKIYSDAGRLEDVKKVKTMMVDRGL 524

[Close]

BLAST of Cp4.1LG01g03750 vs. TAIR10
Match: AT4G25270.1 (AT4G25270.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 332.8 bits (852), Expect = 3.2e-91
Identity = 168/356 (47.19%), Postives = 232/356 (65.17%), Query Frame = 1


Query: 88  NGVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMED 147
           +GV  D   F  +L+ C  + ++  G  IHR +       +V V + L+ +YA  G +  
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248

Query: 148 AHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKAC 207
           A  VFD +  ++    SWNS+++GY   GL  +AL ++  M + G+              
Sbjct: 249 ARNVFDMIPHKDY--VSWNSMLTGYLHHGLLHEALDIFRLMVQNGI-------------- 308

Query: 208 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 267
             EPD VA+S++++ + S K    +HGW IR G+EW LS+ N+LI +Y+  G++ +A ++
Sbjct: 309 --EPDKVAISSVLARVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFI 368

Query: 268 FEQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEG 327
           F+QM ERD VSWN IISAHS  S  L YFE M      PD +TFVS+LS CA+  +V++G
Sbjct: 369 FDQMLERDTVSWNAIISAHSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDG 428

Query: 328 GKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYAC 387
            +L+S+M  +YGI P +EHYACMVNLYGRAG++EEAY +I   M +EAGPTVWGALLYAC
Sbjct: 429 ERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYAC 488

Query: 388 YLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           YLHGN DI EVAA++LFE EPDNE NF+LL++IY  A R ED +RVR MM +RGL+
Sbjct: 489 YLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLE 526

[Close]

BLAST of Cp4.1LG01g03750 vs. TAIR10
Match: AT4G18750.1 (AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-60
Identity = 129/358 (36.03%), Postives = 201/358 (56.15%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           G+  D    +++L  C + R LD G R+H  I  N L  ++ VS+ L+ +YA  G M++A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALY-FQMEEEGVEPDHFTFPRVLKAC 208
             VF EM  +++   SWN++I GY++     +AL+L+   +EE+   PD  T   VL AC
Sbjct: 452 ELVFSEMRVKDI--ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 511

Query: 209 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
                        +++S+      IHG+ +R+G   +  + NSL+ MYA  G +  A  L
Sbjct: 512 -------------ASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 571

Query: 269 FEQMPERDIVSWNTIISA---HSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLV 328
           F+ +  +D+VSW  +I+    H    +A+  F  M   G   D ++FVSLL  C+H  LV
Sbjct: 572 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 631

Query: 329 KEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALL 388
            EG + +++M+ +  I PT+EHYAC+V++  R G + +AYR I N M +    T+WGALL
Sbjct: 632 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIEN-MPIPPDATIWGALL 691

Query: 389 YACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
             C +H +V +AE  AEK+FE EP+N   + L+  IY  A + E  KR+R  + +RGL
Sbjct: 692 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733

[Close]

BLAST of Cp4.1LG01g03750 vs. TAIR10
Match: AT3G46790.1 (AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-59
Identity = 132/363 (36.36%), Postives = 208/363 (57.30%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQ----LRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGY 148
           GV  D   ++ +L+ C      +  L  G  IH  +       +V + + L+ +YA FG 
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232

Query: 149 MEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQM--EEEGVEPDHFTFPR 208
           ++ A  VF  M  RN+   SW+++I+ YA+ G   +AL  + +M  E +   P+  T   
Sbjct: 233 VDYASYVFGGMPVRNV--VSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVS 292

Query: 209 VLKACGYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKIN 268
           VL+AC            ++ +   K    IHG+ +R G++  L ++++L+ MY   GK+ 
Sbjct: 293 VLQACA----------SLAALEQGKL---IHGYILRRGLDSILPVISALVTMYGRCGKLE 352

Query: 269 RARWLFEQMPERDIVSWNTIISA---HSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCA 328
             + +F++M +RD+VSWN++IS+   H    KA+  FE M + G  P  VTFVS+L  C+
Sbjct: 353 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACS 412

Query: 329 HLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTV 388
           H  LV+EG +L+  M   +GI+P IEHYACMV+L GRA  ++EA +++ + M  E GP V
Sbjct: 413 HEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQD-MRTEPGPKV 472

Query: 389 WGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAE 443
           WG+LL +C +HGNV++AE A+ +LF  EP N  N+ LL  IY  A   ++ KRV+ ++  
Sbjct: 473 WGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEH 519

[Close]

BLAST of Cp4.1LG01g03750 vs. TAIR10
Match: AT2G22410.1 (AT2G22410.1 SLOW GROWTH 1)

HSP 1 Score: 219.9 bits (559), Expect = 3.1e-57
Identity = 125/389 (32.13%), Postives = 201/389 (51.67%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D      L+ +C  L  L+ G   +  +  N LR  + + + L+ +++  G + +A
Sbjct: 252 GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEA 311

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLY------------------------------ 208
            ++FD + +R +   SW ++ISGYA  GL                               
Sbjct: 312 RRIFDNLEKRTI--VSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKR 371

Query: 209 -EDALALYFQMEEEGVEPDHFTFPRVLKACGYEPDSVALSTMISNISSSKFKLHIHGWAI 268
            +DALAL+ +M+    +PD  T    L AC             S + +    + IH +  
Sbjct: 372 GQDALALFQEMQTSNTKPDEITMIHCLSAC-------------SQLGALDVGIWIHRYIE 431

Query: 269 RHGIEWNLSIVNSLIAMYANSGKINRARWLFEQMPERDIVSWNTII---SAHSNTSKALT 328
           ++ +  N+++  SL+ MYA  G I+ A  +F  +  R+ +++  II   + H + S A++
Sbjct: 432 KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAIS 491

Query: 329 YFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGGKLYSVMKGKYGIRPTIEHYACMVNLY 388
           YF  M   G  PD +TF+ LLS C H  +++ G   +S MK ++ + P ++HY+ MV+L 
Sbjct: 492 YFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLL 551

Query: 389 GRAGLIEEAYRIITNGMEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNF 444
           GRAGL+EEA R++   M +EA   VWGALL+ C +HGNV++ E AA+KL E +P +   +
Sbjct: 552 GRAGLLEEADRLM-ESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIY 611

[Close]

BLAST of Cp4.1LG01g03750 vs. TAIR10
Match: AT1G68930.1 (AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 219.9 bits (559), Expect = 3.1e-57
Identity = 121/358 (33.80%), Postives = 198/358 (55.31%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHR-LIPTNFLRRNVGVSSKLLRLYASFGYMED 148
           G+ +D   F S+L  C  L A++ G +IH  +I TNF + ++ V S L+ +Y     +  
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF-QDHIYVGSALIDMYCKCKCLHY 324

Query: 149 AHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKAC 208
           A  VFD M Q+N+   SW +++ GY + G  E+A+ ++  M+  G++PDH+T  + + AC
Sbjct: 325 AKTVFDRMKQKNV--VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 384

Query: 209 GYEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWL 268
                        +N+SS +     HG AI  G+   +++ NSL+ +Y   G I+ +  L
Sbjct: 385 -------------ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 444

Query: 269 FEQMPERDIVSWNTIISAHSNTSKA---LTYFEVMESLGFLPDSVTFVSLLSTCAHLSLV 328
           F +M  RD VSW  ++SA++   +A   +  F+ M   G  PD VT   ++S C+   LV
Sbjct: 445 FNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLV 504

Query: 329 KEGGKLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALL 388
           ++G + + +M  +YGI P+I HY+CM++L+ R+G +EEA R I NGM        W  LL
Sbjct: 505 EKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI-NGMPFPPDAIGWTTLL 564

Query: 389 YACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGL 443
            AC   GN++I + AAE L E +P +   + LL  IY + G+ +   ++R  M E+ +
Sbjct: 565 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605

[Close]

BLAST of Cp4.1LG01g03750 vs. NCBI nr
Match: gi|778688525|ref|XP_011652769.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus])

HSP 1 Score: 462.2 bits (1188), Expect = 1.0e-126
Identity = 227/355 (63.94%), Postives = 279/355 (78.59%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  + ++  G  +HR +  +    +V V + L+ +Y+  G +  A
Sbjct: 456 GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 515

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  +++   SWNS+++GY   GL+ +AL ++ QM +E                G
Sbjct: 516 RKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQE----------------G 575

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           YEPDSVALST++SNISS KFKLHIHGW IRHG+EWNLSI NSLI MYA  GK+NRA+WLF
Sbjct: 576 YEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 635

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           +QMP++D+VSWN+IISAH N+++ALTYFEVMESLG  PD VTFVSLLSTCAHL LVKEGG
Sbjct: 636 QQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGG 695

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           KLY +MKGKYGIRPTIEHYACMVNLYGRAG+IEEAY+IIT GME+EAGPT+WGALLYACY
Sbjct: 696 KLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACY 755

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           LH +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR EDEKRV+LMMAERGL+
Sbjct: 756 LHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLN 792

[Close]

BLAST of Cp4.1LG01g03750 vs. NCBI nr
Match: gi|700202147|gb|KGN57280.1| (hypothetical protein Csa_3G176270 [Cucumis sativus])

HSP 1 Score: 462.2 bits (1188), Expect = 1.0e-126
Identity = 227/355 (63.94%), Postives = 279/355 (78.59%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  + ++  G  +HR +  +    +V V + L+ +Y+  G +  A
Sbjct: 207 GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 266

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  +++   SWNS+++GY   GL+ +AL ++ QM +E                G
Sbjct: 267 RKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQE----------------G 326

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           YEPDSVALST++SNISS KFKLHIHGW IRHG+EWNLSI NSLI MYA  GK+NRA+WLF
Sbjct: 327 YEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 386

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           +QMP++D+VSWN+IISAH N+++ALTYFEVMESLG  PD VTFVSLLSTCAHL LVKEGG
Sbjct: 387 QQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGG 446

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           KLY +MKGKYGIRPTIEHYACMVNLYGRAG+IEEAY+IIT GME+EAGPT+WGALLYACY
Sbjct: 447 KLYFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACY 506

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           LH +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR EDEKRV+LMMAERGL+
Sbjct: 507 LHSDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLN 543

[Close]

BLAST of Cp4.1LG01g03750 vs. NCBI nr
Match: gi|659077243|ref|XP_008439101.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 460.7 bits (1184), Expect = 2.9e-126
Identity = 226/355 (63.66%), Postives = 279/355 (78.59%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  + ++  G  +HR +  +    +V V + L+ +Y+  G +  A
Sbjct: 444 GVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRA 503

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  +++   SWNS+++GY   GL+ +AL ++ QM +E                G
Sbjct: 504 RKVFDQIVYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQE----------------G 563

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           Y+PDSVALST++SNI S KFKLHIHGW IRHG+EWNLSI NSLI MYA  GK+NRA+WLF
Sbjct: 564 YKPDSVALSTLLSNILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLF 623

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           +QMP++D+VSWN+IISAH NT++ALTYFEVMESLG LPD VTFVSLLSTCAHL LVKEGG
Sbjct: 624 QQMPQKDMVSWNSIISAHFNTTEALTYFEVMESLGVLPDRVTFVSLLSTCAHLGLVKEGG 683

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           +LYS+MKGKY IRPTIEHYACMVNLYGRAG+IEEAY+IIT GME+EAGPT+WGALLYACY
Sbjct: 684 RLYSLMKGKYRIRPTIEHYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACY 743

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           LH NVDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR +DEKRV+LMMAERGL+
Sbjct: 744 LHRNVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSDDEKRVKLMMAERGLN 780

[Close]

BLAST of Cp4.1LG01g03750 vs. NCBI nr
Match: gi|1009123035|ref|XP_015878328.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 400.6 bits (1028), Expect = 3.6e-108
Identity = 196/356 (55.06%), Postives = 255/356 (71.63%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  +  +  G+ +HR I  +    +  V + L+ +YA  G +  A
Sbjct: 444 GVEPDRYTFPRVLKACAGVGFIQIGVAVHRHIVRSGFLDDGFVLNALVDMYAKCGDIVKA 503

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++   +L   SWNS+++GY   GL  +AL L+ QM ++                G
Sbjct: 504 RKVFDKIASPDL--VSWNSMLTGYTRHGLVLEALDLFCQMLQQ----------------G 563

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           Y+PDS+A+S ++S ++S K  + IHGWA+RHG+EWNLSI NSLI MY+  GK+ +ARWLF
Sbjct: 564 YQPDSIAISAILSGVTSLKLGVQIHGWAVRHGVEWNLSIANSLIVMYSCHGKLVQARWLF 623

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
           E MPERDIVSWN+IISAHS   +AL +FE ME  G LPD++TFVSLLS CAHL LVKEG 
Sbjct: 624 ENMPERDIVSWNSIISAHSKEPEALIFFEQMEKAGVLPDNITFVSLLSACAHLGLVKEGE 683

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           +L+S+M+ +YG+   +EHY CMVNLYGRAGLIEEAY +I  GME+EAGPTVWGALLYAC 
Sbjct: 684 RLFSIMRNRYGMSSIMEHYGCMVNLYGRAGLIEEAYHLIVEGMEIEAGPTVWGALLYACC 743

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLDL 445
           LHGNV++ EVAAE+LFE EPDNE N++LLMKIYGNAGR+ED K V++MM +RGLDL
Sbjct: 744 LHGNVEVGEVAAERLFELEPDNEHNYELLMKIYGNAGRVEDVKTVKMMMVDRGLDL 781

[Close]

BLAST of Cp4.1LG01g03750 vs. NCBI nr
Match: gi|657945057|ref|XP_008377840.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Malus domestica])

HSP 1 Score: 384.8 bits (987), Expect = 2.0e-103
Identity = 193/355 (54.37%), Postives = 250/355 (70.42%), Query Frame = 1


Query: 89  GVPIDAEIFSSLLETCYQLRALDHGIRIHRLIPTNFLRRNVGVSSKLLRLYASFGYMEDA 148
           GV  D   F  +L+ C  +  +  G  +HR +  + L  +  V + L+ +YA  G +  A
Sbjct: 420 GVEPDRFTFPRVLKACGGIGFIQIGEAVHRHVVRSGLLNDRFVLNALVDMYAKCGDIVKA 479

Query: 149 HQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VFD++  R+    SWN++++ Y   G+   AL ++ QM +E                G
Sbjct: 480 RKVFDKISSRD--KVSWNTMLTSYMRHGVLLQALDIFRQMFDE----------------G 539

Query: 209 YEPDSVALSTMISNISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLF 268
           Y+PDSV++ST+++ + S +  + IHGW IR G+EWNLSI N+LIA Y+   ++NRARWLF
Sbjct: 540 YQPDSVSISTILAAVQSLQLVVQIHGWVIRMGVEWNLSIANALIAAYSKHHELNRARWLF 599

Query: 269 EQMPERDIVSWNTIISAHSNTSKALTYFEVMESLGFLPDSVTFVSLLSTCAHLSLVKEGG 328
             MPERD+V+WNTIISAHS + +AL YF+ ME  G LPDS+TFVS+LS CA+L LVK+G 
Sbjct: 600 SHMPERDVVTWNTIISAHSKSREALLYFDQMEKDGALPDSITFVSILSACANLGLVKDGQ 659

Query: 329 KLYSVMKGKYGIRPTIEHYACMVNLYGRAGLIEEAYRIITNGMEVEAGPTVWGALLYACY 388
           +LYSVMK +Y I P +EHYACMVNLYGR+G I+EAY IIT+GME EAGPTVWGALLYACY
Sbjct: 660 RLYSVMKNRYRISPIMEHYACMVNLYGRSGRIKEAYGIITDGMEFEAGPTVWGALLYACY 719

Query: 389 LHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIEDEKRVRLMMAERGLD 444
           LH NVDI EVAAEKLF+ EPDNE NF+LLM IYGN GR+ED +RVRLMM ERGLD
Sbjct: 720 LHSNVDIGEVAAEKLFDLEPDNEYNFELLMMIYGNVGRLEDVERVRLMMMERGLD 756

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP337_ARATH	5.8e-90	47.19	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
PP320_ARATH	2.4e-59	36.03	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
PP265_ARATH	5.8e-58	36.36	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
PP169_ARATH	5.4e-56	32.13	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
PP108_ARATH	5.4e-56	33.80	Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th...	[more]

BLAST of Cp4.1LG01g03750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M0_CUCSA	7.0e-127	63.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1	[more]
M5XGA4_PRUPE	2.4e-103	55.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019039mg PE=4 SV=1	[more]
B9ICU2_POPTR	1.4e-98	52.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14630g PE=4 SV=2	[more]
A0A068U9U2_COFCA	8.9e-98	50.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020312001 PE=4 SV=1	[more]
A0A067JQW8_JATCU	1.2e-97	51.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26236 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g03750 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25270.1	3.2e-91	47.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18750.1	1.3e-60	36.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G46790.1	3.3e-59	36.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22410.1	3.1e-57	32.13	SLOW GROWTH 1	[more]
AT1G68930.1	3.1e-57	33.80	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Cp4.1LG01g03750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688525\|ref\|XP_011652769.1\|	1.0e-126	63.94	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|700202147\|gb\|KGN57280.1\|	1.0e-126	63.94	hypothetical protein Csa_3G176270 [Cucumis sativus]	[more]
gi\|659077243\|ref\|XP_008439101.1\|	2.9e-126	63.66	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|1009123035\|ref\|XP_015878328.1\|	3.6e-108	55.06	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|657945057\|ref\|XP_008377840.1\|	2.0e-103	54.37	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055086	nucleobase-containing small molecule metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006221	pyrimidine nucleotide biosynthetic process
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0008380	RNA splicing
biological_process	GO:0072528	pyrimidine-containing compound biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009117	nucleotide metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019201	nucleotide kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019205	nucleobase-containing compound kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004127	cytidylate kinase activity
molecular_function	GO:0009041	uridylate kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03750.1	Cp4.1LG01g03750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 135..159 score: 0.005coord: 347..366 score: 0.22coord: 248..276 score: 2.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 162..207 score: 3.4
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 163..196 score: 9.8
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 410..444 score: 7.695coord: 244..278 score: 9.964coord: 307..342 score: 6.971coord: 93..127 score: 5.503coord: 161..195 score: 13.066coord: 343..377 score: 7.256coord: 128..158 score: 7
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 134..224 score: 3.5E-7coord: 346..429 score: 3.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 139..185 score: 7.59E-5coord: 358..428 score: 7.5
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..443 score: 1.7E
None	No IPR available	PANTHER	PTHR24015:SF497	SUBFAMILY NOT NAMED	coord: 2..443 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g03750	Cucsa.251540	Cucumber (Gy14) v1	cgycpeB0681
Cp4.1LG01g03750	CmoCh04G003460	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g03750	Cla006263	Watermelon (97103) v1	cpewmB437
Cp4.1LG01g03750	Csa3G176270	Cucumber (Chinese Long) v2	cpecuB394
Cp4.1LG01g03750	CSPI03G16040	Wild cucumber (PI 183967)	cpecpiB393
Cp4.1LG01g03750	MELO3C031784.2	Melon (DHL92) v3.6.1	cpemedB483
Cp4.1LG01g03750	CsaV3_3G016240	Cucumber (Chinese Long) v3	cpecucB0492
Cp4.1LG01g03750	Bhi01G000903	Wax gourd	cpewgoB0520

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g03750	Cp4.1LG01g12780	Cucurbita pepo (Zucchini)	cpecpeB375

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g03750	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG01g03750	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g03750	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g03750	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g03750	Bottle gourd (USVL1VR-Ls)	cpelsiB367
Cp4.1LG01g03750	Watermelon (Charleston Gray)	cpewcgB399
Cp4.1LG01g03750	Melon (DHL92) v3.5.1	cpemeB414
Cp4.1LG01g03750	Cucumber (Gy14) v2	cgybcpeB370
Cp4.1LG01g03750	Silver-seed gourd	carcpeB0527
Cp4.1LG01g03750	Silver-seed gourd	carcpeB1216