Cp4.1LG01g12780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG01 : 8590827 .. 8592859 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACGTATTCGCTTTATCTGAAGGGAGACAGGCGCATGCTCATATCGTTAAACGTGGGTTAGATTCGGATGTTTATGTTGGCAATAGCTTGATTCATTTATATGCTTCTTGTGGGTGTTTGAGTTTAGCATTGAAGGTGTTCGAGAAAATGCCTCACAGAAGTTTGGTTTCGTGGAATGTGATGATTGACGCGTATGTACAATGTGGGCTTTTTGAAAATGCTCTCAAGCTATTCGCTGAAATGCAGGACACTTTTGAGCCCGATGGCTATACAATGCAGAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGGTTATTCACCTGACTATTCACAGGCAACCATGGTCGATGACCCCGATACCGTCAAATGGCAGTCGCTTAAGTTGCATAGTGAGAGATTCGCCATTGCTTTTGGGATACTAAACTTGAAACCTGGGATGCCAATACGCATATTCAAGAATCTTAGAGTATGCAACGACTGCCACCAGGTAACCAAGTTGATTTCTCGAATTTTTAACGTAGAGATTATCATGAGAGATCGTAATAGGTTTCATCATTTTGAGAATGGCATGTGTTCCTGCATGGACTTCTGGTGATTTATTCAAGAACCTGCAGTTTTTTCTTTGAACATCAATGATACAAAAAGCTTCCTAAATTTGGCTGCAATTACTGACATGGATAGTTACATCAATACACATCTTCTGGGAATCCCTAAATCGACTTATATGATCTTCCACATATGGCTTCAAGTTGCTTTTGTTCTAATTATTTCTGTGTGGCCAAATGAAAAAAACATGTAGAATCTGAGTGA

mRNA sequence

ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGAATCTGAGTGA

Coding sequence (CDS)

ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGAATCTGAGTGA

Protein sequence

MILSIPPNGQSIPVEIKHETFHAPQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLFLFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKHESE
Homology
[Close]
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 385.2 bits (988), Expect = 9.3e-106
Identity = 199/384 (51.82%), Postives = 272/384 (70.83%), Query Frame = 1 

Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+H Q ++        +++ + ++H+  S    + A +VFD++   +   WN++I A  
Sbjct: 171 KQVHCQIVK--HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 230

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           R     + A +LF  M  + S EPD +T          S++SACAG+G+LSLG W+HA++
Sbjct: 231 R-FGEYDSALQLFREM--QRSFEPDGYTMQ--------SVLSACAGLGSLSLGTWAHAFL 290

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           LRK    +A +VL+ +SL++MY KCGSL MA+QVF+ M K DL SWN+MIL FA HGRAE
Sbjct: 291 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 350

Query: 222 AALGCFSRLVET-EKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
            A+  F R+V+  E   PNSVTFVG+L ACNHRG V +GR+YFDMMV +Y I P LEHYG
Sbjct: 351 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 410

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQIL---- 341
           C+VDL++R+G+I EA+++V +M +KPDAVIWR+LLDAC K+ A VELSEE+A  I+    
Sbjct: 411 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 470

Query: 342 --QSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 401
             +S     SG YVLLSRVYASA RWNDVG+VRK M++ G+ KEPGCSSIEI+G+SHEFF
Sbjct: 471 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 530

Query: 402 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ K+IY  + +I+++L+
Sbjct: 531 AGDTSHPQTKQIYQQLKVIDDRLR 541

[Close]
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-75
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 1 

Query: 69  SSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHT 128
           S   + E A  +F+++   +   WNTLIG     ++  ++A  LF  ML  G    D   
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTH-MNLYKEALLLFQEMLRSGETPND--- 371

Query: 129 FPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSL 188
                     SI+ ACA +GA+ +G W H Y+ ++  G      L  +SL+DMY+KCG +
Sbjct: 372 ------VTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL-RTSLIDMYAKCGDI 431

Query: 189 SMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSA 248
             A QVF ++    L+SWN+MI  FAMHGRA+A+   FSR+ +     P+ +TFVG+LSA
Sbjct: 432 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLSA 491

Query: 249 CNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAV 308
           C+H GM+  GR  F  M  +YK+ P+LEHYGC++DLL  SG   EA E++  M ++PD V
Sbjct: 492 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 551

Query: 309 IWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKA 368
           IW +LL AC K +  VEL E  A  +++ E   + G YVLLS +YASA RWN+V   R  
Sbjct: 552 IWCSLLKAC-KMHGNVELGESFAENLIKIE-PENPGSYVLLSNIYASAGRWNEVAKTRAL 611

Query: 369 MADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQK 419
           + DKG+ K PGCSSIEID V HEF  GD  HP+ +EIY +++ +E  L+K
Sbjct: 612 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

[Close]
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 9.1e-69
Identity = 141/347 (40.63%), Postives = 210/347 (60.52%), Query Frame = 1 

Query: 71  LTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFP 130
           L D + A  +FD++   +   WNT+I   + +   K+      +R +++G + P+  T  
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE--VFREMKKGDIRPNYVTL- 280

Query: 131 FLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSM 190
                   S++ A + +G+L LG W H Y   +  G    +VL  S+L+DMYSKCG +  
Sbjct: 281 -------VSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVL-GSALIDMYSKCGIIEK 340

Query: 191 AQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACN 250
           A  VFE +P+ ++ +W++MI  FA+HG+A  A+ CF ++ +     P+ V ++ +L+AC+
Sbjct: 341 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTACS 400

Query: 251 HRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIW 310
           H G+V EGR+YF  MV+   + PR+EHYGC+VDLL RSG +DEA E + NM IKPD VIW
Sbjct: 401 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 460

Query: 311 RTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMA 370
           + LL AC +    VE+ + VA  IL       SG YV LS +YAS   W++V  +R  M 
Sbjct: 461 KALLGAC-RMQGNVEMGKRVA-NILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 520

Query: 371 DKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
           +K + K+PGCS I+IDGV HEF   D SHPK KEI +++  I +KL+
Sbjct: 521 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

[Close]
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.5e-67
Identity = 138/338 (40.83%), Postives = 202/338 (59.76%), Query Frame = 1 

Query: 80  VFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYS 139
           +FDQ +  +   W T+I A   S D  ++A ++F  M   G ++PD  +         +S
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVES-DYPQEALRVFEEMCCSG-IKPDVVSM--------FS 359

Query: 140 IISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMP 199
           +ISACA +G L    W H+ +       +  E+ IN++L++MY+KCG L   + VFE MP
Sbjct: 360 VISACANLGILDKAKWVHSCI---HVNGLESELSINNALINMYAKCGGLDATRDVFEKMP 419

Query: 200 KHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGR 259
           + ++ SW+SMI A +MHG A  AL  F+R+ + E   PN VTFVGVL  C+H G+V EG+
Sbjct: 420 RRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLYGCSHSGLVEEGK 479

Query: 260 KYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYK 319
           K F  M +EY I P+LEHYGC+VDL  R+  + EALE++ +M +  + VIW +L+ AC +
Sbjct: 480 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC-R 539

Query: 320 QNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPG 379
            +  +EL +  A +IL+ E     G  VL+S +YA   RW DV  +R+ M +K V KE G
Sbjct: 540 IHGELELGKFAAKRILELEPD-HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKG 599

Query: 380 CSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
            S I+ +G SHEF  GD  H +  EIYA +D +  KL+
Sbjct: 600 LSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

[Close]
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-65
Identity = 137/345 (39.71%), Postives = 197/345 (57.10%), Query Frame = 1 

Query: 75  EYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLK 134
           E A  +FD +   +   WN +I   A+       A  LF ++L EG  +PD+ T      
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQH-GFPNDALMLFQKLLAEGKPKPDEIT------ 268

Query: 135 ACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQV 194
               + +SAC+ IGAL  G W H +V       +   V + + L+DMYSKCGSL  A  V
Sbjct: 269 --VVAALSACSQIGALETGRWIHVFV---KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 328

Query: 195 FETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGM 254
           F   P+ D+ +WN+MI  +AMHG ++ AL  F+ +       P  +TF+G L AC H G+
Sbjct: 329 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGL 388

Query: 255 VAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLL 314
           V EG + F+ M  EY I P++EHYGCLV LL R+G +  A E + NM++  D+V+W ++L
Sbjct: 389 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVL 448

Query: 315 DACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGV 374
            +C K +    L +E+A + L      +SG+YVLLS +YAS   +  V  VR  M +KG+
Sbjct: 449 GSC-KLHGDFVLGKEIA-EYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 508

Query: 375 AKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKH 420
            KEPG S+IEI+   HEF AGD  H K KEIY ++  I E+++ H
Sbjct: 509 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

[Close]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match: A0A0A0KTV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604120 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.1e-145
Identity = 273/382 (71.47%), Postives = 308/382 (80.63%), Query Frame = 1 

Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HAQ  +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 142 LSEGRQAHAQIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 201

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +S    E A KLF  M  + S EPD +T          SI+SACAGIGALSLGMW+
Sbjct: 202 DAYVQS-GLFENALKLFVEM--QNSFEPDGYTMQ--------SIVSACAGIGALSLGMWA 261

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  GAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 262 HAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 321

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           GR +AAL CFSRLVE EKFLPNSVTFVGVLSACNH GMVA+GRKYFDMMVN+YKI PRLE
Sbjct: 322 GRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLE 381

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 382 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 441

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYV+LSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 442 SEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 501

Query: 398 TSHPKIKEIYAVIDLIEEKLQK 419
           TSHP+IKEIY VIDLIEEKL++
Sbjct: 502 TSHPRIKEIYGVIDLIEEKLER 510

[Close]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match: A0A067H5B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038206mg PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1 

Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  +S    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLGMW+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGMWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLV  E F PNS+TFVGVLSACNHRGMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA Q+++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY  +DLI+EKL+
Sbjct: 512 SHPQTKQIYGFLDLIDEKLK 518

[Close]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match: V4VGX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033899mg PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 2.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1 

Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  ++    + A +VFD +   +   WN +I 
Sbjct: 135 SQGKQAHAHIFKRGLA--SDVYINNSLIHFYATCGHLDLANKVFDNMLERSLVSWNVMID 194

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLG W+H
Sbjct: 195 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGTWAH 254

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 255 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 314

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLVE E F PNS+TFVGVLSACNH GMV+EGR YFD+M+NEY I P LEH
Sbjct: 315 RAEAALKYFDRLVEEESFSPNSITFVGVLSACNHMGMVSEGRDYFDVMINEYNITPVLEH 374

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA QI++S
Sbjct: 375 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQIIES 434

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 435 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 494

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY V+DLI+EKL+
Sbjct: 495 SHPQTKQIYGVLDLIDEKLK 501

[Close]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match: A0A061E5J4_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_010027 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 215/376 (57.18%), Postives = 283/376 (75.27%), Query Frame = 1 

Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+HA AL+      S +++ + ++H+ +S    + A +VF ++   +   WN LI   A
Sbjct: 152 KQVHAHALK--HRFGSDVYVNNSLIHLYASCGCLDLAEKVFVKMSGRSLVSWNVLIEGFA 211

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           +   +   A +LF  M  +   +PD +T          S+ISACAG+GALSLG W+HAY+
Sbjct: 212 Q-FGKFNTALELFREM--QNRFDPDGYTLQ--------SVISACAGLGALSLGAWAHAYL 271

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           L K    +  +VLIN+SLVDMY KCGSL +AQQVFE MP+ DL SWN MIL FAMHG+A+
Sbjct: 272 LNKCDFDLCSDVLINNSLVDMYCKCGSLELAQQVFERMPRRDLTSWNHMILGFAMHGQAD 331

Query: 222 AALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGC 281
            A+GCF +++ TE F PNS+TFVGVLSACNH+GMV +GR++FD+M+N+Y+I P LEHYGC
Sbjct: 332 EAIGCFDKMIRTESFRPNSITFVGVLSACNHKGMVFKGREFFDLMINDYEIKPGLEHYGC 391

Query: 282 LVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSETT 341
           LVDLL+R+GFID+AL++V+ M ++PDAVIWR+LLDAC K+N  VELSEE+A Q+L+SE  
Sbjct: 392 LVDLLARAGFIDDALDIVSTMPMRPDAVIWRSLLDACCKKNGSVELSEELANQVLESEGD 451

Query: 342 ASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSHP 401
             SGV+VLLSRVYASA RW+DVGLVRK M DKGV KEPGCSS+EIDGV+HE FAGDTSHP
Sbjct: 452 IGSGVFVLLSRVYASASRWDDVGLVRKLMTDKGVTKEPGCSSLEIDGVAHELFAGDTSHP 511

Query: 402 KIKEIYAVIDLIEEKL 417
           + KEIY ++++I+EKL
Sbjct: 512 QTKEIYQMLNVIDEKL 514

[Close]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match: B9ILY9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10010g PE=4 SV=2)

HSP 1 Score: 429.5 bits (1103), Expect = 4.8e-117
Identity = 219/377 (58.09%), Postives = 280/377 (74.27%), Query Frame = 1 

Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ HA  L+     +S +++ + ++H  +S    E A  VFD++   +   WN +I A  
Sbjct: 134 KQAHAHLLKL--GFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFV 193

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
                 E A +LF +  ++   EPD +T          S+I+ACAG+ ALSLGMW+HA++
Sbjct: 194 L-FGEFETALQLFVQFQQQ-FFEPDGYTIQ--------SVINACAGLCALSLGMWAHAFL 253

Query: 162 LRKTGGAMAGE-VLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRA 221
           LR  G ++A + VL+N+SL+DMY KCGSL +A Q+FE M KHD+ SWNSMIL FAMHG+ 
Sbjct: 254 LRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKG 313

Query: 222 EAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
           E AL CF R++   +F+PNS+TFVGVLSACNHR MV EGRKYFDMMVNEYKI P+LEHYG
Sbjct: 314 ELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYG 373

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSET 341
           CLVD+L+R+G IDEALELV +M +KPD VIWR+LLD+C K+NA VELSE +A QIL+SE 
Sbjct: 374 CLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEE 433

Query: 342 TASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSH 401
             SSGVYVLLSRVYASA RWNDVGLVRK M + G+ KEPGCS IE+DGV+HEFFAGDTSH
Sbjct: 434 ADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSH 493

Query: 402 PKIKEIYAVIDLIEEKL 417
           P+ KEIY V++++EE++
Sbjct: 494 PQTKEIYQVLNVVEERI 498

[Close]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match: AT1G59720.1 (AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 385.2 bits (988), Expect = 5.2e-107
Identity = 199/384 (51.82%), Postives = 272/384 (70.83%), Query Frame = 1 

Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+H Q ++        +++ + ++H+  S    + A +VFD++   +   WN++I A  
Sbjct: 171 KQVHCQIVK--HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 230

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           R     + A +LF  M  + S EPD +T          S++SACAG+G+LSLG W+HA++
Sbjct: 231 R-FGEYDSALQLFREM--QRSFEPDGYTMQ--------SVLSACAGLGSLSLGTWAHAFL 290

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           LRK    +A +VL+ +SL++MY KCGSL MA+QVF+ M K DL SWN+MIL FA HGRAE
Sbjct: 291 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 350

Query: 222 AALGCFSRLVET-EKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
            A+  F R+V+  E   PNSVTFVG+L ACNHRG V +GR+YFDMMV +Y I P LEHYG
Sbjct: 351 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 410

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQIL---- 341
           C+VDL++R+G+I EA+++V +M +KPDAVIWR+LLDAC K+ A VELSEE+A  I+    
Sbjct: 411 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 470

Query: 342 --QSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 401
             +S     SG YVLLSRVYASA RWNDVG+VRK M++ G+ KEPGCSSIEI+G+SHEFF
Sbjct: 471 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 530

Query: 402 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ K+IY  + +I+++L+
Sbjct: 531 AGDTSHPQTKQIYQQLKVIDDRLR 541

[Close]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-77
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 1 

Query: 69  SSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHT 128
           S   + E A  +F+++   +   WNTLIG     ++  ++A  LF  ML  G    D   
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTH-MNLYKEALLLFQEMLRSGETPND--- 371

Query: 129 FPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSL 188
                     SI+ ACA +GA+ +G W H Y+ ++  G      L  +SL+DMY+KCG +
Sbjct: 372 ------VTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL-RTSLIDMYAKCGDI 431

Query: 189 SMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSA 248
             A QVF ++    L+SWN+MI  FAMHGRA+A+   FSR+ +     P+ +TFVG+LSA
Sbjct: 432 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLSA 491

Query: 249 CNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAV 308
           C+H GM+  GR  F  M  +YK+ P+LEHYGC++DLL  SG   EA E++  M ++PD V
Sbjct: 492 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 551

Query: 309 IWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKA 368
           IW +LL AC K +  VEL E  A  +++ E   + G YVLLS +YASA RWN+V   R  
Sbjct: 552 IWCSLLKAC-KMHGNVELGESFAENLIKIE-PENPGSYVLLSNIYASAGRWNEVAKTRAL 611

Query: 369 MADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQK 419
           + DKG+ K PGCSSIEID V HEF  GD  HP+ +EIY +++ +E  L+K
Sbjct: 612 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

[Close]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match: AT5G48910.1 (AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 262.3 bits (669), Expect = 5.1e-70
Identity = 141/347 (40.63%), Postives = 210/347 (60.52%), Query Frame = 1 

Query: 71  LTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFP 130
           L D + A  +FD++   +   WNT+I   + +   K+      +R +++G + P+  T  
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE--VFREMKKGDIRPNYVTL- 280

Query: 131 FLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSM 190
                   S++ A + +G+L LG W H Y   +  G    +VL  S+L+DMYSKCG +  
Sbjct: 281 -------VSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVL-GSALIDMYSKCGIIEK 340

Query: 191 AQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACN 250
           A  VFE +P+ ++ +W++MI  FA+HG+A  A+ CF ++ +     P+ V ++ +L+AC+
Sbjct: 341 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTACS 400

Query: 251 HRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIW 310
           H G+V EGR+YF  MV+   + PR+EHYGC+VDLL RSG +DEA E + NM IKPD VIW
Sbjct: 401 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 460

Query: 311 RTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMA 370
           + LL AC +    VE+ + VA  IL       SG YV LS +YAS   W++V  +R  M 
Sbjct: 461 KALLGAC-RMQGNVEMGKRVA-NILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 520

Query: 371 DKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
           +K + K+PGCS I+IDGV HEF   D SHPK KEI +++  I +KL+
Sbjct: 521 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

[Close]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 255.8 bits (652), Expect = 4.8e-68
Identity = 138/338 (40.83%), Postives = 202/338 (59.76%), Query Frame = 1 

Query: 80  VFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYS 139
           +FDQ +  +   W T+I A   S D  ++A ++F  M   G ++PD  +         +S
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVES-DYPQEALRVFEEMCCSG-IKPDVVSM--------FS 359

Query: 140 IISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMP 199
           +ISACA +G L    W H+ +       +  E+ IN++L++MY+KCG L   + VFE MP
Sbjct: 360 VISACANLGILDKAKWVHSCI---HVNGLESELSINNALINMYAKCGGLDATRDVFEKMP 419

Query: 200 KHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGR 259
           + ++ SW+SMI A +MHG A  AL  F+R+ + E   PN VTFVGVL  C+H G+V EG+
Sbjct: 420 RRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLYGCSHSGLVEEGK 479

Query: 260 KYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYK 319
           K F  M +EY I P+LEHYGC+VDL  R+  + EALE++ +M +  + VIW +L+ AC +
Sbjct: 480 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC-R 539

Query: 320 QNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPG 379
            +  +EL +  A +IL+ E     G  VL+S +YA   RW DV  +R+ M +K V KE G
Sbjct: 540 IHGELELGKFAAKRILELEPD-HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKG 599

Query: 380 CSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
            S I+ +G SHEF  GD  H +  EIYA +D +  KL+
Sbjct: 600 LSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

[Close]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-67
Identity = 137/345 (39.71%), Postives = 197/345 (57.10%), Query Frame = 1 

Query: 75  EYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLK 134
           E A  +FD +   +   WN +I   A+       A  LF ++L EG  +PD+ T      
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQH-GFPNDALMLFQKLLAEGKPKPDEIT------ 268

Query: 135 ACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQV 194
               + +SAC+ IGAL  G W H +V       +   V + + L+DMYSKCGSL  A  V
Sbjct: 269 --VVAALSACSQIGALETGRWIHVFV---KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 328

Query: 195 FETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGM 254
           F   P+ D+ +WN+MI  +AMHG ++ AL  F+ +       P  +TF+G L AC H G+
Sbjct: 329 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGL 388

Query: 255 VAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLL 314
           V EG + F+ M  EY I P++EHYGCLV LL R+G +  A E + NM++  D+V+W ++L
Sbjct: 389 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVL 448

Query: 315 DACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGV 374
            +C K +    L +E+A + L      +SG+YVLLS +YAS   +  V  VR  M +KG+
Sbjct: 449 GSC-KLHGDFVLGKEIA-EYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 508

Query: 375 AKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKH 420
            KEPG S+IEI+   HEF AGD  H K KEIY ++  I E+++ H
Sbjct: 509 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

[Close]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match: gi|659090955|ref|XP_008446291.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 4.9e-147
Identity = 277/383 (72.32%), Postives = 308/383 (80.42%), Query Frame = 1 

Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HA   +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 148 LSEGRQAHAHIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 207

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +     E A KLF+ M  + S EPD +T          SIISACAGIGALSLGMW+
Sbjct: 208 DAYVQC-GLFENALKLFFEM--QNSFEPDGYTMQ--------SIISACAGIGALSLGMWA 267

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK GGAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 268 HAYVLRKAGGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 327

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           G  EAAL CFSRLVE E FLPNSVTFVGVLSACNHRGMVA+GRKYFDMMVNEYKI PRLE
Sbjct: 328 GLGEAALQCFSRLVEMEIFLPNSVTFVGVLSACNHRGMVADGRKYFDMMVNEYKIEPRLE 387

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 388 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 447

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYVLLSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 448 SEKTVSSGVYVLLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 507

Query: 398 TSHPKIKEIYAVIDLIEEKLQKH 420
           TSHP+IKEIY VIDLIEEKL+KH
Sbjct: 508 TSHPRIKEIYGVIDLIEEKLEKH 517

[Close]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match: gi|449435366|ref|XP_004135466.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 1.6e-145
Identity = 273/382 (71.47%), Postives = 308/382 (80.63%), Query Frame = 1 

Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HAQ  +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 142 LSEGRQAHAQIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 201

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +S    E A KLF  M  + S EPD +T          SI+SACAGIGALSLGMW+
Sbjct: 202 DAYVQS-GLFENALKLFVEM--QNSFEPDGYTMQ--------SIVSACAGIGALSLGMWA 261

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  GAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 262 HAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 321

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           GR +AAL CFSRLVE EKFLPNSVTFVGVLSACNH GMVA+GRKYFDMMVN+YKI PRLE
Sbjct: 322 GRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLE 381

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 382 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 441

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYV+LSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 442 SEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 501

Query: 398 TSHPKIKEIYAVIDLIEEKLQK 419
           TSHP+IKEIY VIDLIEEKL++
Sbjct: 502 TSHPRIKEIYGVIDLIEEKLER 510

[Close]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match: gi|645229957|ref|XP_008221704.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Prunus mume])

HSP 1 Score: 447.6 bits (1150), Expect = 2.4e-122
Identity = 234/384 (60.94%), Postives = 289/384 (75.26%), Query Frame = 1 

Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  KQ HA A++      S +++ + ++H+ +S    E A +VF+++   +   WN +I
Sbjct: 148 LSEGKQAHANAVKL--GFDSDVYINNSLIHLYASCGRLELAKKVFEKMRERSVVSWNVMI 207

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            +  R+    E A KLF  M ++   EPD +T          SII+ACAG+GAL  GMW+
Sbjct: 208 DSFVRA-GEFETALKLFGEMQKK--FEPDGYTMQ--------SIINACAGLGALYFGMWA 267

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  G +A +VLINSSL+DMY KCGSL +AQQVF+ MPKHD+ +WN MIL FAMH
Sbjct: 268 HAYVLRKCDGGLANDVLINSSLIDMYCKCGSLEIAQQVFDRMPKHDVTTWNYMILGFAMH 327

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           G+AEAAL  F RLV+ E F PNS+TFVGVLSACNHRGMV EGRK+FD+MVN+Y+I PRLE
Sbjct: 328 GQAEAALKYFERLVKKETFAPNSITFVGVLSACNHRGMVNEGRKFFDLMVNKYRIEPRLE 387

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCL DLL+R+GFIDEAL LVT M +KPD VIWR+LLDAC KQ+A VELSEEVA QIL+
Sbjct: 388 HYGCLADLLARAGFIDEALNLVTTMPMKPDIVIWRSLLDACSKQHASVELSEEVARQILE 447

Query: 338 S---ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 397
           S   +   SSGVYVLLSRVYASA RWNDVG +RK M D GVAKEPGCS IEIDGV+HEFF
Sbjct: 448 STGGQGGVSSGVYVLLSRVYASASRWNDVGSIRKLMTDDGVAKEPGCSLIEIDGVTHEFF 507

Query: 398 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ +EIY V+D+++E+L+
Sbjct: 508 AGDTSHPRSREIYRVLDVVKERLE 518

[Close]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match: gi|641864025|gb|KDO82711.1| (hypothetical protein CISIN_1g038206mg [Citrus sinensis])

HSP 1 Score: 438.0 bits (1125), Expect = 1.9e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1 

Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  +S    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLGMW+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGMWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLV  E F PNS+TFVGVLSACNHRGMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA Q+++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY  +DLI+EKL+
Sbjct: 512 SHPQTKQIYGFLDLIDEKLK 518

[Close]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match: gi|568859476|ref|XP_006483265.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Citrus sinensis])

HSP 1 Score: 437.2 bits (1123), Expect = 3.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1 

Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  ++    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYATCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLG W+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGTWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLVE E F PNS+TFVGVLSACNH GMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVEEESFSPNSITFVGVLSACNHMGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA QI++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQIIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY V+DLI+EKL+
Sbjct: 512 SHPQTKQIYGVLDLIDEKLK 518

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR85_ARATH9.3e-10651.82Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
PPR21_ARATH1.0e-7543.14Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP425_ARATH9.1e-6940.63Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN... [more]
PP311_ARATH8.5e-6740.83Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN... [more]
PP354_ARATH1.6e-6539.71Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
BLAST of Cp4.1LG01g12780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTV7_CUCSA1.1e-14571.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604120 PE=4 SV=1[more]
A0A067H5B3_CITSI1.3e-11960.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038206mg PE=4 SV=1[more]
V4VGX7_9ROSI2.3e-11960.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033899mg PE=4 SV=1[more]
A0A061E5J4_THECC1.6e-11757.18Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC... [more]
B9ILY9_POPTR4.8e-11758.09Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10010g PE=4 SV=2[more]
BLAST of Cp4.1LG01g12780 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G59720.15.2e-10751.82 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.15.6e-7743.14 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G48910.15.1e-7040.63 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G14820.14.8e-6840.83 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G37380.19.0e-6739.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG01g12780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090955|ref|XP_008446291.1|4.9e-14772.32PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial ... [more]
gi|449435366|ref|XP_004135466.1|1.6e-14571.47PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial ... [more]
gi|645229957|ref|XP_008221704.1|2.4e-12260.94PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g... [more]
gi|641864025|gb|KDO82711.1|1.9e-11960.00hypothetical protein CISIN_1g038206mg [Citrus sinensis][more]
gi|568859476|ref|XP_006483265.1|3.3e-11960.00PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016556 mRNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0055086 nucleobase-containing small molecule metabolic process
biological_process GO:0006796 phosphate-containing compound metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0019205 nucleobase-containing compound kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12780.1Cp4.1LG01g12780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 240..267
score: 0.62coord: 205..230
score: 0.0015coord: 176..201
score: 0.029coord: 277..301
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 87..137
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 205..238
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 202..237
score: 8.528coord: 171..201
score: 7.18coord: 88..123
score: 9.767coord: 342..376
score: 5.919coord: 274..304
score: 6.939coord: 238..268
score: 7.344coord: 306..341
score: 5
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 72..138
score: 1.4E-5coord: 174..264
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 402..422
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..383
score: 4.2E
NoneNo IPR availablePANTHERPTHR24015:SF20SUBFAMILY NOT NAMEDcoord: 1..383
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g12780Cucsa.285520Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12780CmaCh04G016190Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12780CmoCh04G016970Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12780Cla010140Watermelon (97103) v1cpewmB432
Cp4.1LG01g12780Csa5G604120Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12780ClCG05G024720Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12780CSPI05G23260Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12780Lsi04G004830Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12780MELO3C034110.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12780Bhi07G001328Wax gourdcpewgoB0568
Cp4.1LG01g12780CsGy5G022760Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12780Carg01738Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g12780Cp4.1LG01g03750Cucurbita pepo (Zucchini)cpecpeB375
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12780Melon (DHL92) v3.6.1cpemedB421
Cp4.1LG01g12780Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12780Silver-seed gourdcarcpeB0148
Cp4.1LG01g12780Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12780Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12780Cucumber (Chinese Long) v3cpecucB0537
Cp4.1LG01g12780Wax gourdcpewgoB0507
Cp4.1LG01g12780Wax gourdcpewgoB0551
Cp4.1LG01g12780Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG01g12780Cucurbita pepo (Zucchini)cpecpeB203
Cp4.1LG01g12780Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12780Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g12780Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g12780Watermelon (97103) v1cpewmB444
Cp4.1LG01g12780Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12780Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12780Cucumber (Gy14) v2cgybcpeB645