CsGy3G016120 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATGTATTCCAAATGTGGTTGCATTGTGAGGGCTAGGAAAGTGTTTGATCAGATTGAGTATAAGGATATAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTTCACTTTGAGGCATTAGACATCTTTGATCAAATGATTCAAGAAGGTTACGAGCCCGATTCGGTTGCTTTGTCCACCCTACTTTCTAACATTTCGTCAATGAAATTCAAGTTACATATTCATGGATGGGTAATTCGACATGGAGTCGAATGGAATTTGTCCATTGCTAACTCCTTGATAGTCATGTATGCCAAATGTGGTAAGCTTAACAGAGCAAAATGGCTGTTCCAGCAAATGCCTCAAAAGGACATGGTCTCATGGAACTCCATAATCTCTGCTCATTTCAATAGCGCAGAAGCTTTGACATATTTCGAAGTGATGGAAAGCCTTGGTGTTTCGCCAGACGGTGTAACATTTGTGTCATTGTTATCAACTTGTGCTCATCTGGGGTTGGTGAAGGAAGGGGGGAAATTGTATTTTTTGATGAAGGGGAAGTACGGAATAAGACCAACAATTGAACATTATGCTTGTATGGTGAATCTTTACGGGAGAGCAGGGATGATTGAAGAAGCTTATAAAATCATAACGAAAGGGATGGAGATCGAGGCAGGTCCGACCATATGGGGGGCGTTGTTGTATGCGTGTTATCTCCATAGCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS
BLAST of CsGy3G016120 vs. NCBI nr
Match: KGN57280.1 (hypothetical protein Csa_3G176270 [Cucumis sativus]) HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49 Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0
BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_011652769.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus]) HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49 Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0
BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_016898932.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo]) HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47 Identity = 145/385 (37.66%), Postives = 149/385 (38.70%), Query Frame = 0
BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_022140840.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Momordica charantia]) HSP 1 Score: 186.8 bits (473), Expect = 5.3e-44 Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0
HSP 2 Score: 101.7 bits (252), Expect = 2.3e-18 Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 0
BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_022942651.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita moschata]) HSP 1 Score: 186.4 bits (472), Expect = 7.0e-44 Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 0
HSP 2 Score: 95.1 bits (235), Expect = 2.1e-16 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 0
BLAST of CsGy3G016120 vs. TAIR10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-38 Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0
HSP 2 Score: 80.9 bits (198), Expect = 7.5e-16 Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of CsGy3G016120 vs. TAIR10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 94.7 bits (234), Expect = 5.0e-20 Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 0
BLAST of CsGy3G016120 vs. TAIR10
Match: AT4G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19 Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of CsGy3G016120 vs. TAIR10
Match: AT3G12770.1 (mitochondrial editing factor 22) HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 0
BLAST of CsGy3G016120 vs. TAIR10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein) HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 0
BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9SB36|PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37 Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0
HSP 2 Score: 80.9 bits (198), Expect = 1.4e-14 Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9M9E2|PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 9.0e-19 Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 0
BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|O49619|PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H27 PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.4e-18 Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9LTV8|PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 0
BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9LUS3|PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 0
BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A0A0L5M0|A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49 Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0
BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A1S4DSF7|A0A1S4DSF7_CUCME (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990382 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47 Identity = 145/385 (37.66%), Postives = 149/385 (38.70%), Query Frame = 0
BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A2P6SMD5|A0A2P6SMD5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0374811 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 6.9e-40 Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 0
HSP 2 Score: 80.9 bits (198), Expect = 2.7e-12 Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 0
BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|M5XGA4|M5XGA4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280000 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39 Identity = 83/108 (76.85%), Postives = 90/108 (83.33%), Query Frame = 0
HSP 2 Score: 89.0 bits (219), Expect = 1.0e-14 Identity = 61/133 (45.86%), Postives = 77/133 (57.89%), Query Frame = 0
BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|D7T277|D7T277_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0022g00970 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38 Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 0
HSP 2 Score: 84.7 bits (208), Expect = 1.9e-13 Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |