CsGy3G016120 (gene) Cucumber (Gy14) v2

NameCsGy3G016120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationChr3 : 11971832 .. 11972989 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATGTATTCCAAATGTGGTTGCATTGTGAGGGCTAGGAAAGTGTTTGATCAGATTGAGTATAAGGATATAGTTTCCTGGAACTCAATGCTCACTGGTTACACACGCCATGGGCTTCACTTTGAGGCATTAGACATCTTTGATCAAATGATTCAAGAAGGTTACGAGCCCGATTCGGTTGCTTTGTCCACCCTACTTTCTAACATTTCGTCAATGAAATTCAAGTTACATATTCATGGATGGGTAATTCGACATGGAGTCGAATGGAATTTGTCCATTGCTAACTCCTTGATAGTCATGTATGCCAAATGTGGTAAGCTTAACAGAGCAAAATGGCTGTTCCAGCAAATGCCTCAAAAGGACATGGTCTCATGGAACTCCATAATCTCTGCTCATTTCAATAGCGCAGAAGCTTTGACATATTTCGAAGTGATGGAAAGCCTTGGTGTTTCGCCAGACGGTGTAACATTTGTGTCATTGTTATCAACTTGTGCTCATCTGGGGTTGGTGAAGGAAGGGGGGAAATTGTATTTTTTGATGAAGGGGAAGTACGGAATAAGACCAACAATTGAACATTATGCTTGTATGGTGAATCTTTACGGGAGAGCAGGGATGATTGAAGAAGCTTATAAAATCATAACGAAAGGGATGGAGATCGAGGCAGGTCCGACCATATGGGGGGCGTTGTTGTATGCGTGTTATCTCCATAGCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG

mRNA sequence

ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG

Coding sequence (CDS)

ATGGAGGATGCACACCAGGTGTTCGACGAAATGGGTAATCGTAATTTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGATACGCGGAACTTGGTCTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACAATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGTGCATCGGCATGTAGTTCGTTCTGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTTTAGTTGACATCGATGTAGATATCGCTGAGATTGCTGCTGAAAGACTCTTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTTTGATGAAGATTTATGGCAATGCTGGGAGATCGGAGGACGAGAAGCGAGTGAAATTAATGATGGCAGAACGAGGACTGAATTCATAG

Protein sequence

MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS
BLAST of CsGy3G016120 vs. NCBI nr
Match: KGN57280.1 (hypothetical protein Csa_3G176270 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL
Sbjct: 160 MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 219

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI----------------------- 120
           KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD+                       
Sbjct: 220 KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIV 279

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 280 SWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRH 339

BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_011652769.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL
Sbjct: 409 MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 468

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI----------------------- 120
           KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD+                       
Sbjct: 469 KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIV 528

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 529 SWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRH 588

BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_016898932.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47
Identity = 145/385 (37.66%), Postives = 149/385 (38.70%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEMG RNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVL
Sbjct: 145 MEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVL 204

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI----------------------- 120
           KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD+                       
Sbjct: 205 KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIVYKDIV 264

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 265 SWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSNILSLKFKLHIHGWVIRH 324

BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_022140840.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 5.3e-44
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           ME AHQVFDEM  RN SAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVL
Sbjct: 140 MESAHQVFDEMCKRNVSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVL 199

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
           KACGGIGSIQIGEAVHRH+VRSGFAGDVFVLNALVD+     +I   R
Sbjct: 200 KACGGIGSIQIGEAVHRHIVRSGFAGDVFVLNALVDMYSKCGDIVRAR 247


HSP 2 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 0

Query: 3   DAHQVFDEMGNRNF--SAFAWNSLISGYAELGLYEDALALYFQME-EEGVEPDNFTFPRV 62
           +A + F++M +         + SL+S  A LGL ++   L+  M+ + G+ P    +  +
Sbjct: 371 EALEYFEQMESHGVLPDTVTFVSLLSTCAHLGLVKEGERLHSVMKGKYGIRPTMEHYACM 430

Query: 63  LKACGGIGSIQIGEAVHRHVVRS-------GFAGDVFVLNALVDIDVDIAEIAAERLFEL 122
           +   G  G I   E  +R ++R           G +     L +  VDIAEIAAE+LFEL
Sbjct: 431 VNLYGRAGLI---EEAYRIIIRGMELEAGPTVWGALLYACFLRNGSVDIAEIAAEKLFEL 490

Query: 123 EPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLN 150
           EPDNELNFELLMKIYGNAGRSEDEKRV+LMM ERGL+
Sbjct: 491 EPDNELNFELLMKIYGNAGRSEDEKRVRLMMKERGLD 524

BLAST of CsGy3G016120 vs. NCBI nr
Match: XP_022942651.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 7.0e-44
Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEM  RN SAF+WNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVL
Sbjct: 145 MEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVL 204

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
           KACGGIGSI++GEAVHRH+VRSGFAGD+FVLNALVD+     +I   R
Sbjct: 205 KACGGIGSIRVGEAVHRHIVRSGFAGDIFVLNALVDMYAKCGDIMRAR 252


HSP 2 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 23  SLISGYAELGLYEDALALYFQME-EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 82
           SL+S  A L L ++   LY +M+ + G+ P    +  ++   G  G I   E  +R ++ 
Sbjct: 398 SLLSTCAHLSLVKEGGKLYTEMKGKYGIRPTIEHYACMVNLYGRAGLI---EEAYR-IIT 457

Query: 83  SGFAGDV--FVLNALVDI-----DVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSE 142
           +G   +    V  AL+       +VDIAE+AAE+LFE EPDNELNF+LLMKIYGNAGR E
Sbjct: 458 NGMEVEAGPTVWGALLYACYLHGNVDIAEVAAEKLFESEPDNELNFKLLMKIYGNAGRIE 517

Query: 143 DEKRVKLMMAERGLN 150
           DEKRV+LMMAERGL+
Sbjct: 518 DEKRVRLMMAERGLD 528

BLAST of CsGy3G016120 vs. TAIR10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-38
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0

Query: 2   EDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLK 61
           E AH+VFD M  R+ S FAWNSLISGYAELG YEDA+ALYFQM E+GV+PD FTFPRVLK
Sbjct: 144 EVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLK 203

Query: 62  ACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIA-AERLFELEPDNE-LN 121
           ACGGIGS+QIGEA+HR +V+ GF  DV+VLNALV +     +I  A  +F++ P  + ++
Sbjct: 204 ACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVS 263

Query: 122 FELLMKIYGNAGRSEDEKRVKLMMAERGL 149
           +  ++  Y + G   +   +  +M + G+
Sbjct: 264 WNSMLTGYLHHGLLHEALDIFRLMVQNGI 292


HSP 2 Score: 80.9 bits (198), Expect = 7.5e-16
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0

Query: 8   FDEM--GNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEE-GVEPDNFTFPRVLKACG 67
           F++M   N       + S++S  A  G+ ED   L+  M +E G++P    +  ++   G
Sbjct: 379 FEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYG 438

Query: 68  GIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI-----DVDIAEIAAERLFELEPDNELN 127
             G ++  EA    V   G      V  AL+       + DI E+AA+RLFELEPDNE N
Sbjct: 439 RAGMME--EAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHN 498

Query: 128 FELLMKIYGNAGRSEDEKRVKLMMAERGLNS 151
           FELL++IY  A R+ED +RV+ MM +RGL +
Sbjct: 499 FELLIRIYSKAKRAEDVERVRQMMVDRGLET 527

BLAST of CsGy3G016120 vs. TAIR10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-20
Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 0

Query: 3   DAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQM-EEEGVEPDNFTFPRVLK 62
           DA  VF +M  RN   F+WN L+ GYA+ G +++A+ LY +M    GV+PD +TFP VL+
Sbjct: 147 DAWYVFGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLR 206

Query: 63  ACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER-LFELEPDNE-LN 122
            CGGI  +  G+ VH HVVR G+  D+ V+NAL+ + V   ++ + R LF+  P  + ++
Sbjct: 207 TCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 266

Query: 123 FELLMKIYGNAGRSEDEKRVKLMMAERGLN 150
           +  ++  Y   G   +   ++L  A RGL+
Sbjct: 267 WNAMISGYFENGMCHE--GLELFFAMRGLS 292

BLAST of CsGy3G016120 vs. TAIR10
Match: AT4G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDA Q+FDEM   +  AF WN +I G+   GLY +A+  Y +M   GV+ D FT+P V+
Sbjct: 80  MEDALQLFDEMNKAD--AFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVI 139

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDI-AEIAAERLFELEPD 116
           K+  GI S++ G+ +H  V++ GF  DV+V N+L+ + + +     AE++FE  P+
Sbjct: 140 KSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

BLAST of CsGy3G016120 vs. TAIR10
Match: AT3G12770.1 (mitochondrial editing factor 22)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 4   AHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKAC 63
           A QVFD++       F WN++I GY+    ++DAL +Y  M+   V PD+FTFP +LKAC
Sbjct: 72  ARQVFDDLPRPQI--FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC 131

Query: 64  GGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
            G+  +Q+G  VH  V R GF  DVFV N L+ +      + + R
Sbjct: 132 SGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

BLAST of CsGy3G016120 vs. TAIR10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           +E A  VFDE+ +   +  AW+ +I  YA     E AL LY++M   GV P  +T+P VL
Sbjct: 51  VELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVL 110

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEI-AAERLFELEPDNEL 119
           KAC G+ +I  G+ +H HV  S FA D++V  ALVD      E+  A ++F+  P  ++
Sbjct: 111 KACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDM 169

BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9SB36|PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0

Query: 2   EDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLK 61
           E AH+VFD M  R+ S FAWNSLISGYAELG YEDA+ALYFQM E+GV+PD FTFPRVLK
Sbjct: 144 EVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLK 203

Query: 62  ACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIA-AERLFELEPDNE-LN 121
           ACGGIGS+QIGEA+HR +V+ GF  DV+VLNALV +     +I  A  +F++ P  + ++
Sbjct: 204 ACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVS 263

Query: 122 FELLMKIYGNAGRSEDEKRVKLMMAERGL 149
           +  ++  Y + G   +   +  +M + G+
Sbjct: 264 WNSMLTGYLHHGLLHEALDIFRLMVQNGI 292


HSP 2 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0

Query: 8   FDEM--GNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEE-GVEPDNFTFPRVLKACG 67
           F++M   N       + S++S  A  G+ ED   L+  M +E G++P    +  ++   G
Sbjct: 379 FEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYG 438

Query: 68  GIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI-----DVDIAEIAAERLFELEPDNELN 127
             G ++  EA    V   G      V  AL+       + DI E+AA+RLFELEPDNE N
Sbjct: 439 RAGMME--EAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHN 498

Query: 128 FELLMKIYGNAGRSEDEKRVKLMMAERGLNS 151
           FELL++IY  A R+ED +RV+ MM +RGL +
Sbjct: 499 FELLIRIYSKAKRAEDVERVRQMMVDRGLET 527

BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9M9E2|PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-19
Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 0

Query: 3   DAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQM-EEEGVEPDNFTFPRVLK 62
           DA  VF +M  RN   F+WN L+ GYA+ G +++A+ LY +M    GV+PD +TFP VL+
Sbjct: 147 DAWYVFGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLR 206

Query: 63  ACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER-LFELEPDNE-LN 122
            CGGI  +  G+ VH HVVR G+  D+ V+NAL+ + V   ++ + R LF+  P  + ++
Sbjct: 207 TCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 266

Query: 123 FELLMKIYGNAGRSEDEKRVKLMMAERGLN 150
           +  ++  Y   G   +   ++L  A RGL+
Sbjct: 267 WNAMISGYFENGMCHE--GLELFFAMRGLS 292

BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|O49619|PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-18
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDA Q+FDEM   +  AF WN +I G+   GLY +A+  Y +M   GV+ D FT+P V+
Sbjct: 80  MEDALQLFDEMNKAD--AFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVI 139

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDI-AEIAAERLFELEPD 116
           K+  GI S++ G+ +H  V++ GF  DV+V N+L+ + + +     AE++FE  P+
Sbjct: 140 KSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9LTV8|PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 4   AHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKAC 63
           A QVFD++       F WN++I GY+    ++DAL +Y  M+   V PD+FTFP +LKAC
Sbjct: 72  ARQVFDDLPRPQI--FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC 131

Query: 64  GGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
            G+  +Q+G  VH  V R GF  DVFV N L+ +      + + R
Sbjct: 132 SGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

BLAST of CsGy3G016120 vs. Swiss-Prot
Match: sp|Q9LUS3|PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           +E A  VFDE+ +   +  AW+ +I  YA     E AL LY++M   GV P  +T+P VL
Sbjct: 51  VELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVL 110

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEI-AAERLFELEPDNEL 119
           KAC G+ +I  G+ +H HV  S FA D++V  ALVD      E+  A ++F+  P  ++
Sbjct: 111 KACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDM 169

BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A0A0L5M0|A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 149/385 (38.70%), Postives = 150/385 (38.96%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL
Sbjct: 160 MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 219

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI----------------------- 120
           KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD+                       
Sbjct: 220 KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIV 279

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 280 SWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRH 339

BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A1S4DSF7|A0A1S4DSF7_CUCME (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990382 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 145/385 (37.66%), Postives = 149/385 (38.70%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           MEDAHQVFDEMG RNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPD+FTFPRVL
Sbjct: 145 MEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDHFTFPRVL 204

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDI----------------------- 120
           KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVD+                       
Sbjct: 205 KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIVYKDIV 264

Query: 121 ------------------------------------------------------------ 151
                                                                       
Sbjct: 265 SWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSNILSLKFKLHIHGWVIRH 324

BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|A0A2P6SMD5|A0A2P6SMD5_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0374811 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.9e-40
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           +E+AHQVFD+M  R+ SAFAWNSLISGYAELGLYEDA+ALYFQMEEEGVEPD FTFPRVL
Sbjct: 136 VEEAHQVFDQMPKRDVSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVEPDRFTFPRVL 195

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
           KACGGIG +QIGEAVHRH VR GF GD FVLNALVD+     +I   R
Sbjct: 196 KACGGIGFVQIGEAVHRHAVRLGFVGDRFVLNALVDMYAKCGDIVKAR 243


HSP 2 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 18  AFAWNSLISGYAELGLYEDALALYFQMEEE-GVEPDNFTFPRVLKACGGIGSIQIGEAVH 77
           A  + S++S  A LGL +D   L+  M+    + P    +  ++   G  G I+  EA  
Sbjct: 384 AITFVSILSVCAHLGLVKDGERLFSTMKNRYRISPIMEHYACMVNLYGRAGLIK--EAYG 443

Query: 78  RHVVRSGFAGDVFVLNALVDI-----DVDIAEIAAERLFELEPDNELNFELLMKIYGNAG 137
             +    F     V  AL+       + +I E+AAERLF+LEPDNE NFELLMKIYGN G
Sbjct: 444 IIMEGMEFEAGPTVWGALLYACYLYGNAEIGEVAAERLFDLEPDNEYNFELLMKIYGNVG 503

Query: 138 RSEDEKRVKLMMAERGLNS 151
           R ++ +RV++MM +RGL+S
Sbjct: 504 RLDNVERVRMMMVDRGLDS 520

BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|M5XGA4|M5XGA4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280000 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 83/108 (76.85%), Postives = 90/108 (83.33%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           +E+AHQVFDEM  R+ SAFAWNSLISGYAELGLYEDA+ALYFQMEEEGVEPD FTFPRVL
Sbjct: 135 IEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVEPDRFTFPRVL 194

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
           KACGGIG IQIGEAVHRH+VR G   D FVLNALVD+     +I   R
Sbjct: 195 KACGGIGFIQIGEAVHRHIVRLGLLNDRFVLNALVDMYAKCGDIVKAR 242


HSP 2 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 61/133 (45.86%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 23  SLISGYAELGLYEDALALYFQMEEE-GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 82
           S++S  A LGL +D   LY  M+    + P    +  ++   G  G I+  EA    V  
Sbjct: 389 SILSTCAHLGLVKDGERLYSVMKNRYRISPIMEHYACMVNLYGRAGRIR--EAYGIIVDG 448

Query: 83  SGFAGDVFVLNALVDI-----DVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDE 142
             F     V  AL+       +VDI E+AAERLFELEPDNE NFELL+KIYGN GR ED 
Sbjct: 449 MEFEAGPTVWGALLYACYLHGNVDIGEVAAERLFELEPDNEYNFELLIKIYGNVGRLEDV 508

Query: 143 KRVKLMMAERGLN 150
           +RV+LMM ERGL+
Sbjct: 509 ERVRLMMVERGLD 519

BLAST of CsGy3G016120 vs. TrEMBL
Match: tr|D7T277|D7T277_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0022g00970 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 0

Query: 1   MEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVL 60
           +E+AH++FD+M  RN SAFAWNSLISGYAELGLYEDA+ALYFQMEEEGV PD FTFPRVL
Sbjct: 130 IEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVL 189

Query: 61  KACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDIDVDIAEIAAER 109
           KACGGIGSI +GE VHRHVVR GFA D FVLNALVD+     +I   R
Sbjct: 190 KACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKAR 237


HSP 2 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 0

Query: 23  SLISGYAELGLYEDALALYFQMEEE-GVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVR 82
           SL+S  A LGL +D   L+  M E+ G+ P    +  ++   G  G I+  EA      R
Sbjct: 383 SLLSACAHLGLVKDGEGLFSMMREDYGMIPSMEHYACMVNLYGRAGLIE--EAYEIIEKR 442

Query: 83  SGFAGDVFVLNALV-----DIDVDIAEIAAERLFELEPDNELNFELLMKIYGNAGRSEDE 142
             F     V  AL+       +VDI +IAAE LFELEPDNE NFELLM IY N GR ED 
Sbjct: 443 MEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFELEPDNEHNFELLMNIYRNVGRLEDV 502

Query: 143 KRVKLMMAERGLNS 151
           ++V+ MMA+RG +S
Sbjct: 503 EKVRKMMADRGFDS 514

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57280.12.5e-4938.70hypothetical protein Csa_3G176270 [Cucumis sativus][more]
XP_011652769.12.5e-4938.70PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
XP_016898932.14.0e-4737.66PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
XP_022140840.15.3e-4485.19pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Momordica ... [more]
XP_022942651.17.0e-4482.41pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita ... [more]
Match NameE-valueIdentityDescription
AT4G25270.13.1e-3853.02Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G15510.15.0e-2038.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G35130.11.9e-1940.52Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G12770.12.8e-1840.95mitochondrial editing factor 22[more]
AT3G16610.12.3e-1738.66pentatricopeptide (PPR) repeat-containing protein[more]
Match NameE-valueIdentityDescription
sp|Q9SB36|PP337_ARATH5.6e-3753.02Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop... [more]
sp|Q9M9E2|PPR45_ARATH9.0e-1938.00Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
sp|O49619|PP350_ARATH3.4e-1840.52Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop... [more]
sp|Q9LTV8|PP224_ARATH5.0e-1740.95Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX... [more]
sp|Q9LUS3|PP237_ARATH4.2e-1638.66Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L5M0|A0A0A0L5M0_CUCSA1.6e-4938.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1[more]
tr|A0A1S4DSF7|A0A1S4DSF7_CUCME2.6e-4737.66pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis ... [more]
tr|A0A2P6SMD5|A0A2P6SMD5_ROSCH6.9e-4076.85Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
tr|M5XGA4|M5XGA4_PRUPE3.4e-3976.85Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G280000 PE=4 SV=1[more]
tr|D7T277|D7T277_VITVI1.3e-3875.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0022g00970 PE=4 SV=... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0006221 pyrimidine nucleotide biosynthetic process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004127 cytidylate kinase activity
molecular_function GO:0009041 uridylate kinase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G016120.1CsGy3G016120.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 19..63
e-value: 3.5E-11
score: 43.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 20..52
e-value: 4.1E-10
score: 37.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..86
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 17..51
score: 12.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 7.147
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..150
e-value: 1.3E-21
score: 79.3
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..97
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 97..149
NoneNo IPR availablePANTHERPTHR24015:SF497SUBFAMILY NOT NAMEDcoord: 97..149
coord: 2..97

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G016120Cucumber (Gy14) v2cgybcgybB091
CsGy3G016120Cucurbita maxima (Rimu)cgybcmaB325
CsGy3G016120Cucurbita maxima (Rimu)cgybcmaB342
CsGy3G016120Cucurbita maxima (Rimu)cgybcmaB394
CsGy3G016120Cucurbita maxima (Rimu)cgybcmaB399
CsGy3G016120Cucurbita maxima (Rimu)cgybcmaB417
CsGy3G016120Cucurbita moschata (Rifu)cgybcmoB296
CsGy3G016120Cucurbita moschata (Rifu)cgybcmoB312
CsGy3G016120Cucurbita moschata (Rifu)cgybcmoB365
CsGy3G016120Cucurbita moschata (Rifu)cgybcmoB371
CsGy3G016120Cucurbita moschata (Rifu)cgybcmoB394
CsGy3G016120Cucurbita pepo (Zucchini)cgybcpeB314
CsGy3G016120Cucurbita pepo (Zucchini)cgybcpeB327
CsGy3G016120Cucurbita pepo (Zucchini)cgybcpeB370
CsGy3G016120Cucurbita pepo (Zucchini)cgybcpeB427
CsGy3G016120Cucumber (Chinese Long) v2cgybcuB109
CsGy3G016120Cucumber (Chinese Long) v2cgybcuB128
CsGy3G016120Bottle gourd (USVL1VR-Ls)cgyblsiB141
CsGy3G016120Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G016120Melon (DHL92) v3.5.1cgybmeB141
CsGy3G016120Melon (DHL92) v3.5.1cgybmeB200
CsGy3G016120Melon (DHL92) v3.6.1cgybmedB137
CsGy3G016120Watermelon (Charleston Gray)cgybwcgB191
CsGy3G016120Watermelon (Charleston Gray)cgybwcgB203
CsGy3G016120Watermelon (97103) v1cgybwmB246
CsGy3G016120Wild cucumber (PI 183967)cgybcpiB110
CsGy3G016120Wild cucumber (PI 183967)cgybcpiB130
CsGy3G016120Silver-seed gourdcarcgybB0859
CsGy3G016120Silver-seed gourdcarcgybB0906
CsGy3G016120Cucumber (Chinese Long) v3cgybcucB135
CsGy3G016120Watermelon (97103) v2cgybwmbB172