Cla006262 (gene) Watermelon (97103) v1

Overview
NameCla006262
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat protein 45 (AHRD V1 *-*- F5CAE4_FUNHY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr5 : 7481042 .. 7481788 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

mRNA sequence

ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

Coding sequence (CDS)

ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

Protein sequence

MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPDPLTPWVDGGCHSFRLCWRCLCPQCSS
Homology
[Close]
BLAST of Cla006262 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-62
Identity = 125/213 (58.69%), Postives = 155/213 (72.77%), Query Frame = 1 

Query: 11  PSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQT 70
           PS S     SS  KK  +  ++L   +  + +     T LSF K S TPLLI  +   +T
Sbjct: 9   PSFSYPSVSSSSMKKKPRHHQQLKQHRQNQYNN-NGFTSLSFTKPSPTPLLIEKQSIHRT 68

Query: 71  KIQALDALLTDLEASVDNGLFI-DPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNV 130
           +++ALD+++TDLE S   G+ + +P+IF+SLLE CY LRAI HG+R+H LIP  LLR N+
Sbjct: 69  QLEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNL 128

Query: 131 GVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQME 190
           G+SSKL+RLYAS GY E AH+VFD M+KR+ S FAWNSLISGYAELG YEDA+ALYFQM 
Sbjct: 129 GISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMA 188

Query: 191 EEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPD 223
           E+GV+PD FTFPRVLKACGGIGS+QIGEA   D
Sbjct: 189 EDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRD 220


HSP 2 Score: 55.5 bits (132), Expect = 9.9e-07
Identity = 33/118 (27.97%), Postives = 58/118 (49.15%), Query Frame = 1 

Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           ++G+  D   F  +L+ C  + ++  G  +HR +       +V V + L+ +YA  G + 
Sbjct: 188 EDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIV 247

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A  VFD +  ++    +WNS+++GY   G   +AL ++  M + G+EPD      VL
Sbjct: 248 KARNVFDMIPHKDY--VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL 303

[Close]
BLAST of Cla006262 vs. Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-17
Identity = 55/195 (28.21%), Postives = 100/195 (51.28%), Query Frame = 1 

Query: 24  KKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTKIQALDALLTDLE 83
           + S+  R      K  +  + ++    S P  S  P +IH  +    +   L+  LT L+
Sbjct: 41  RPSRTRRPSTSPAKKPKPFRERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILD 100

Query: 84  ASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFG 143
                G+ ++   FS+LLE C + +++ HG ++H  I  N L  N  + +KL+ +Y + G
Sbjct: 101 YLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACG 160

Query: 144 YMENAHQVFDEMTKRNVSAFAWNSLISGYAELG--FYEDALALYFQMEEEGVEPDHFTFP 203
            +++A +VFDE T  NV  ++WN+L+ G    G   Y+D L+ + +M E GV+ + ++  
Sbjct: 161 SVKDAQKVFDESTSSNV--YSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLS 220

Query: 204 RVLKACGGIGSIQIG 217
            V K+  G  +++ G
Sbjct: 221 NVFKSFAGASALRQG 233


HSP 2 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 40/142 (28.17%), Postives = 64/142 (45.07%), Query Frame = 1 

Query: 76  DALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKL 135
           D  L  +      G   D    +++L VC +LRAI  G  +H     NL   NV + + L
Sbjct: 400 DQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSL 459

Query: 136 LRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEP 195
           + +Y+  G  E   ++FD + +RNV   AW ++I  Y E       + ++  M      P
Sbjct: 460 MVMYSKCGVPEYPIRLFDRLEQRNVK--AWTAMIDCYVENCDLRAGIEVFRLMLLSKHRP 519

Query: 196 DHFTFPRVLKACGGIGSIQIGE 218
           D  T  RVL  C  + ++++G+
Sbjct: 520 DSVTMGRVLTVCSDLKALKLGK 539

[Close]
BLAST of Cla006262 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 8.1e-17
Identity = 65/212 (30.66%), Postives = 104/212 (49.06%), Query Frame = 1 

Query: 15  LLLFCSSKPKKSKKERKKLLH---QKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTK 74
           LL  C S  +  + + + LLH   +    I KA E  D ++     +         F   
Sbjct: 43  LLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYM 102

Query: 75  IQALDALLTDLEASVD-------NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNL 134
           I+ L     D EA++        +GL  D   ++ +   C +L  I  G  +H  +    
Sbjct: 103 IRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVG 162

Query: 135 LRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALAL 194
           L R+V ++  L+ +YA  G +  A ++FDE+T+R+    +WNS+ISGY+E G+ +DA+ L
Sbjct: 163 LERDVHINHSLIMMYAKCGQVGYARKLFDEITERDT--VSWNSMISGYSEAGYAKDAMDL 222

Query: 195 YFQMEEEGVEPDHFTFPRVLKACGGIGSIQIG 217
           + +MEEEG EPD  T   +L AC  +G ++ G
Sbjct: 223 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTG 252


HSP 2 Score: 59.7 bits (143), Expect = 5.2e-08
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 1 

Query: 89  GLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENA 148
           G+  D    S++L  C  + A+  G ++        L+ N+ V++ L+ +Y   G +E A
Sbjct: 329 GVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

Query: 149 HQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VF+ M  +N +   WN++I+ YA  G  ++AL L+ +M    V P   TF  VL AC 
Sbjct: 389 LRVFEAMPVKNEA--TWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACV 448

Query: 209 GIGSIQIG 217
             G +  G
Sbjct: 449 HAGLVHQG 451

[Close]
BLAST of Cla006262 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 43/127 (33.86%), Postives = 77/127 (60.63%), Query Frame = 1 

Query: 92  IDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQV 151
           +D  +F +L+ +C   RA   G +++ +  +++    V + +  L ++  FG + +A  V
Sbjct: 92  VDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYV 151

Query: 152 FDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQM-EEEGVEPDHFTFPRVLKACGGI 211
           F +M++RN+  F+WN L+ GYA+ G++++A+ LY +M    GV+PD +TFP VL+ CGGI
Sbjct: 152 FGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGI 211

Query: 212 GSIQIGE 218
             +  G+
Sbjct: 212 PDLARGK 216

[Close]
BLAST of Cla006262 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-16
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 1 

Query: 82  LEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYAS 141
           L+  +  G+  +P  +SS L+ C    ++  G  +H +   N    NV V S L+ +YA 
Sbjct: 474 LKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAK 533

Query: 142 FGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFP 201
            G++  A +VFD M ++N+   +W ++I GYA  GF  +AL L ++ME EG E D + F 
Sbjct: 534 CGFVSEAFRVFDSMPEKNL--VSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFA 593

Query: 202 RVLKACGGI 211
            +L  CG I
Sbjct: 594 TILSTCGDI 600


HSP 2 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 36/119 (30.25%), Postives = 71/119 (59.66%), Query Frame = 1 

Query: 99  SLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKR 158
           S+L+ C + +A+  G ++H L+   +++ +V V + L+ +YA  G + +  +VFD M+ R
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348

Query: 159 NVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           N     W S+I+ +A  GF E+A++L+  M+   +  ++ T   +L+ACG +G++ +G+
Sbjct: 349 NT--VTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGK 405

[Close]
BLAST of Cla006262 vs. TrEMBL
Match: A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 16  MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 75

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 233

[Close]
BLAST of Cla006262 vs. TrEMBL
Match: A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1 

Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 205 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 264

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 265 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 320


HSP 2 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 140/218 (64.22%), Postives = 173/218 (79.36%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +S+ +    LSFPK+  TPL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VSQNQSNNSLSFPKTIPTPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I  K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IICHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

[Close]
BLAST of Cla006262 vs. TrEMBL
Match: V4SDA0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 136/218 (62.39%), Postives = 172/218 (78.90%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLF-CSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTP 60
           M+  L P  S  TSL++  C SK K+S+K+R+    QK  +IS+ + TT  S+PKSS TP
Sbjct: 1   MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRR----QKQQQISRNRITTFSSYPKSSPTP 60

Query: 61  LLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRL 120
           LL + K F +TK+QALD+++ DLE+SV NG+ +  + F+SLLE CYQL+A+ HGI+LHRL
Sbjct: 61  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL 120

Query: 121 IPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYE 180
           IPTNLLR+N G+SSKLLRLYA+FG ++ AHQVFD+M+ R   AF WNSLISGYAELG YE
Sbjct: 121 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 180

Query: 181 DALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           DA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE
Sbjct: 181 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214

[Close]
BLAST of Cla006262 vs. TrEMBL
Match: V4SDA0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 1 

Query: 88  NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMEN 147
           NG   DP   SS+L     LR    G ++H  +    +  ++ +++ L+ +Y+  G ++ 
Sbjct: 289 NGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 348

Query: 148 AHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYF-QMEEEGVEPDHFTFPRVLKA 207
           A  +FD M +++V   +WNS+I  +++    +  + +YF QME +GV PDH TF  +L A
Sbjct: 349 ACWLFDHMPQKDV--VSWNSIIHAHSK----DHEVLIYFEQMERDGVLPDHITFVSLLSA 408

Query: 208 CGGIGSIQIGE 218
           C  +GS++ GE
Sbjct: 409 CAHLGSVKDGE 410


HSP 2 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 136/218 (62.39%), Postives = 172/218 (78.90%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLF-CSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTP 60
           M+  L P  S  TSL++  C SK K+S+K+R+    QK  +IS+ + TT  S+PKSS TP
Sbjct: 1   MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRR----QKQQQISRNRITTFSSYPKSSPTP 60

Query: 61  LLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRL 120
           LL + K F +TK+QALD+++ DLE+SV NG+ +  + F+SLLE CYQL+A+ HGI+LHRL
Sbjct: 61  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL 120

Query: 121 IPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYE 180
           IPTNLLR+N G+SSKLLRLYA+FG ++ AHQVFD+M+ R   AF WNSLISGYAELG YE
Sbjct: 121 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 180

Query: 181 DALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           DA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE
Sbjct: 181 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214

[Close]
BLAST of Cla006262 vs. TrEMBL
Match: A0A067FH03_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009782mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 42/130 (32.31%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 88  NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMEN 147
           NG   DP   SS+L     LR    G ++H  +    +  ++ +++ L+ +Y+  G ++ 
Sbjct: 289 NGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 348

Query: 148 AHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKAC 207
           A  +FD M +++V   +WNS+I  +++     +AL  + QME +GV PDH TF  +L AC
Sbjct: 349 ACWLFDHMPQKDV--VSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSAC 408

Query: 208 GGIGSIQIGE 218
             +GS+++GE
Sbjct: 409 AHLGSVKVGE 410


HSP 2 Score: 270.0 bits (689), Expect = 2.8e-69
Identity = 144/222 (64.86%), Postives = 171/222 (77.03%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+  LQP      S  L CSSK KKS+K+++  L +K +  SK+   T L F KSS TPL
Sbjct: 252 MVALLQPPSFHFVSWTLSCSSKSKKSEKQKQ--LKRKQIHQSKS---TALPFRKSSPTPL 311

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LI+ K F QTK+QALDA++ DLEASV NG+ I  +IFSSLLE CYQL++I  GI++H L+
Sbjct: 312 LINHKPFTQTKLQALDAVVKDLEASVKNGMNITSEIFSSLLETCYQLKSIDQGIKIHNLV 371

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P  LLR+N G+SSKLLRLYAS G++E+AHQVFDEM+KRN SAF WNSLISGYAELG YED
Sbjct: 372 PKTLLRKNTGISSKLLRLYASCGHIESAHQVFDEMSKRNESAFPWNSLISGYAELGQYED 431

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPD 223
           ALA+YFQMEEEGVEPD +TFPR LKAC GIG IQIGEA   D
Sbjct: 432 ALAIYFQMEEEGVEPDRYTFPRALKACAGIGLIQIGEAVHRD 468

[Close]
BLAST of Cla006262 vs. NCBI nr
Match: gi|659077243|ref|XP_008439101.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 389.0 bits (998), Expect = 6.0e-105
Identity = 195/218 (89.45%), Postives = 206/218 (94.50%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISLQ    PSTSLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSSSTPL
Sbjct: 253 MLISLQLLTPPSTSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSSTPL 312

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIH K FFQ+KIQALDA+LTDLE S+DNGL IDP+IFSSLLE+CYQLRAIHHGIR+HRLI
Sbjct: 313 LIHSKPFFQSKIQALDAVLTDLETSIDNGLLIDPEIFSSLLELCYQLRAIHHGIRIHRLI 372

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYAS GYME+AHQVFDEM KRN SAFAWNSLISGYAELG YED
Sbjct: 373 PTNLLRRNVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYED 432

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA
Sbjct: 433 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 470

[Close]
BLAST of Cla006262 vs. NCBI nr
Match: gi|659077243|ref|XP_008439101.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 33/118 (27.97%), Postives = 65/118 (55.08%), Query Frame = 1 

Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 442 EEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 501

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG +PD      +L
Sbjct: 502 RARKVFDQIVYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLL 557


HSP 2 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 265 MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 324

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 325 LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 384

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 385 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 444

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 445 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 482

[Close]
BLAST of Cla006262 vs. NCBI nr
Match: gi|778688525|ref|XP_011652769.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1 

Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 454 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 513

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 514 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 569


HSP 2 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 16  MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 75

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 233

[Close]
BLAST of Cla006262 vs. NCBI nr
Match: gi|700202147|gb|KGN57280.1| (hypothetical protein Csa_3G176270 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1 

Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 205 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 264

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 265 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 320


HSP 2 Score: 274.6 bits (701), Expect = 1.7e-70
Identity = 140/218 (64.22%), Postives = 173/218 (79.36%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +S+ +    LSFPK+  TPL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VSQNQSNNSLSFPKTIPTPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I  K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IICHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

[Close]
BLAST of Cla006262 vs. NCBI nr
Match: gi|645257364|ref|XP_008234381.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Prunus mume])

HSP 1 Score: 273.5 bits (698), Expect = 3.7e-70
Identity = 138/218 (63.30%), Postives = 173/218 (79.36%), Query Frame = 1 

Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +++ +    LSFPK+   PL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VNQNQSNNSLSFPKTIPNPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I+ K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IIYHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

The following BLAST results are available for this feature:
BLAST of Cla006262 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP337_ARATH1.3e-6258.69Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop... [more]
PP115_ARATH4.7e-1728.21Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidop... [more]
PP184_ARATH8.1e-1730.66Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN... [more]
PPR45_ARATH2.4e-1633.86Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP319_ARATH3.1e-1634.88Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN... [more]
BLAST of Cla006262 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5M0_CUCSA1.2e-10488.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1[more]
A0A0A0L5M0_CUCSA2.0e-0628.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1[more]
V4SDA0_9ROSI2.2e-6962.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1[more]
V4SDA0_9ROSI2.8e-0832.06Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1[more]
A0A067FH03_CITSI2.5e-0932.31Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009782mg PE=4 SV=1[more]
BLAST of Cla006262 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077243|ref|XP_008439101.1|6.0e-10589.45PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
gi|659077243|ref|XP_008439101.1|6.4e-0627.97PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
gi|778688525|ref|XP_011652769.1|2.9e-0628.81PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
gi|700202147|gb|KGN57280.1|2.9e-0628.81hypothetical protein Csa_3G176270 [Cucumis sativus][more]
gi|645257364|ref|XP_008234381.1|3.7e-7063.30PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0006221 pyrimidine nucleotide biosynthetic process
biological_process GO:0008380 RNA splicing
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005524 ATP binding
molecular_function GO:0004127 cytidylate kinase activity
molecular_function GO:0009041 uridylate kinase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006262Cla006262.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 135..160
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 163..207
score: 6.1
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 164..196
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 161..195
score: 12.792coord: 93..127
score: 5.009coord: 128..158
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..218
score: 3.3
NoneNo IPR availablePANTHERPTHR24015:SF497SUBFAMILY NOT NAMEDcoord: 3..218
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006262CsGy3G016120Cucumber (Gy14) v2cgybwmB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006262Silver-seed gourdcarwmB0373
Cla006262Silver-seed gourdcarwmB0874
Cla006262Silver-seed gourdcarwmB0920
Cla006262Cucumber (Chinese Long) v3cucwmB239
Cla006262Cucumber (Chinese Long) v3cucwmB427
Cla006262Cucumber (Chinese Long) v3cucwmB429
Cla006262Watermelon (97103) v2wmwmbB193
Cla006262Watermelon (97103) v2wmwmbB206
Cla006262Wax gourdwgowmB201
Cla006262Watermelon (97103) v1wmwmB126
Cla006262Cucumber (Gy14) v1cgywmB479
Cla006262Cucumber (Gy14) v1cgywmB549
Cla006262Cucurbita maxima (Rimu)cmawmB266
Cla006262Cucurbita maxima (Rimu)cmawmB316
Cla006262Cucurbita maxima (Rimu)cmawmB564
Cla006262Cucurbita maxima (Rimu)cmawmB567
Cla006262Cucurbita maxima (Rimu)cmawmB707
Cla006262Cucurbita moschata (Rifu)cmowmB257
Cla006262Cucurbita moschata (Rifu)cmowmB310
Cla006262Cucurbita moschata (Rifu)cmowmB558
Cla006262Cucurbita moschata (Rifu)cmowmB702
Cla006262Melon (DHL92) v3.5.1mewmB019
Cla006262Melon (DHL92) v3.5.1mewmB461
Cla006262Watermelon (Charleston Gray)wcgwmB137
Cla006262Watermelon (Charleston Gray)wcgwmB286
Cla006262Cucumber (Chinese Long) v2cuwmB233
Cla006262Cucumber (Chinese Long) v2cuwmB403
Cla006262Cucurbita pepo (Zucchini)cpewmB182
Cla006262Cucurbita pepo (Zucchini)cpewmB227
Cla006262Cucurbita pepo (Zucchini)cpewmB437
Cla006262Cucurbita pepo (Zucchini)cpewmB703
Cla006262Cucurbita pepo (Zucchini)cpewmB705
Cla006262Bottle gourd (USVL1VR-Ls)lsiwmB024
Cla006262Bottle gourd (USVL1VR-Ls)lsiwmB366
Cla006262Cucumber (Gy14) v2cgybwmB376
Cla006262Cucumber (Gy14) v2cgybwmB378
Cla006262Melon (DHL92) v3.6.1medwmB021
Cla006262Melon (DHL92) v3.6.1medwmB015
Cla006262Melon (DHL92) v3.6.1medwmB447