Cla006262.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006262
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat protein 45 (AHRD V1 -- F5CAE4_FUNHY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Location	Chr5 : 7481042 .. 7481788 (-)
Sequence length	747

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

mRNA sequence

ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

Coding sequence (CDS)

ATGCTGATTTCTTTGCAACCGTCAATTTCACCCTCAACTTCGCTTCTTCTCTTCTGTTCTTCTAAACCCAAGAAATCCAAGAAAGAGAGAAAGAAACTTCTTCACCAAAAACTTCTTCGCATAAGCAAAGCCAAAGAGACCACTGATCTCTCCTTCCCTAAATCCTCATCAACCCCTCTCTTAATCCACCCCAAACTCTTCTTCCAAACCAAAATTCAAGCCCTTGATGCTCTTCTCACTGACCTTGAAGCTTCTGTCGACAATGGCCTCTTTATTGATCCTCAAATTTTCTCTTCCCTCTTGGAAGTTTGCTACCAATTGCGAGCCATCCACCATGGTATTCGGCTTCATCGCTTAATACCCACCAATCTTTTACGGAGAAATGTGGGTGTTTCTTCTAAGCTTCTTCGTCTGTATGCTTCCTTTGGGTACATGGAGAATGCACACCAGGTGTTTGATGAAATGACTAAACGTAATGTCTCTGCATTTGCTTGGAATTCTCTTATTTCTGGGTATGCTGAACTTGGTTTTTATGAAGATGCTCTGGCGCTTTACTTTCAAATGGAGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCTCAAGGCCTGTGGTGGCATTGGGTCGATTCAAATCGGAGAGGCGGCGCCGCCGGACCCCCTTACGCCCTGGGTTGATGGGGGATGCCATTCGTTCAGGCTTTGCTGGAGATGTCTTTGTCCTCAATGCTCTAGTTGA

Protein sequence

MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPDPLTPWVDGGCHSFRLCWRCLCPQCSS

Homology

[Close]

BLAST of Cla006262 vs. Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-62
Identity = 125/213 (58.69%), Postives = 155/213 (72.77%), Query Frame = 1


Query: 11  PSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQT 70
           PS S     SS  KK  +  ++L   +  + +     T LSF K S TPLLI  +   +T
Sbjct: 9   PSFSYPSVSSSSMKKKPRHHQQLKQHRQNQYNN-NGFTSLSFTKPSPTPLLIEKQSIHRT 68

Query: 71  KIQALDALLTDLEASVDNGLFI-DPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNV 130
           +++ALD+++TDLE S   G+ + +P+IF+SLLE CY LRAI HG+R+H LIP  LLR N+
Sbjct: 69  QLEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNL 128

Query: 131 GVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQME 190
           G+SSKL+RLYAS GY E AH+VFD M+KR+ S FAWNSLISGYAELG YEDA+ALYFQM 
Sbjct: 129 GISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMA 188

Query: 191 EEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPD 223
           E+GV+PD FTFPRVLKACGGIGS+QIGEA   D
Sbjct: 189 EDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRD 220

HSP 2 Score: 55.5 bits (132), Expect = 9.9e-07
Identity = 33/118 (27.97%), Postives = 58/118 (49.15%), Query Frame = 1


Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           ++G+  D   F  +L+ C  + ++  G  +HR +       +V V + L+ +YA  G + 
Sbjct: 188 EDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIV 247

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A  VFD +  ++    +WNS+++GY   G   +AL ++  M + G+EPD      VL
Sbjct: 248 KARNVFDMIPHKDY--VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL 303

[Close]

BLAST of Cla006262 vs. Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-17
Identity = 55/195 (28.21%), Postives = 100/195 (51.28%), Query Frame = 1


Query: 24  KKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTKIQALDALLTDLE 83
           + S+  R      K  +  + ++    S P  S  P +IH  +    +   L+  LT L+
Sbjct: 41  RPSRTRRPSTSPAKKPKPFRERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILD 100

Query: 84  ASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFG 143
                G+ ++   FS+LLE C + +++ HG ++H  I  N L  N  + +KL+ +Y + G
Sbjct: 101 YLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACG 160

Query: 144 YMENAHQVFDEMTKRNVSAFAWNSLISGYAELG--FYEDALALYFQMEEEGVEPDHFTFP 203
            +++A +VFDE T  NV  ++WN+L+ G    G   Y+D L+ + +M E GV+ + ++  
Sbjct: 161 SVKDAQKVFDESTSSNV--YSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLS 220

Query: 204 RVLKACGGIGSIQIG 217
            V K+  G  +++ G
Sbjct: 221 NVFKSFAGASALRQG 233

HSP 2 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 40/142 (28.17%), Postives = 64/142 (45.07%), Query Frame = 1


Query: 76  DALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKL 135
           D  L  +      G   D    +++L VC +LRAI  G  +H     NL   NV + + L
Sbjct: 400 DQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSL 459

Query: 136 LRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEP 195
           + +Y+  G  E   ++FD + +RNV   AW ++I  Y E       + ++  M      P
Sbjct: 460 MVMYSKCGVPEYPIRLFDRLEQRNVK--AWTAMIDCYVENCDLRAGIEVFRLMLLSKHRP 519

Query: 196 DHFTFPRVLKACGGIGSIQIGE 218
           D  T  RVL  C  + ++++G+
Sbjct: 520 DSVTMGRVLTVCSDLKALKLGK 539

[Close]

BLAST of Cla006262 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 8.1e-17
Identity = 65/212 (30.66%), Postives = 104/212 (49.06%), Query Frame = 1


Query: 15  LLLFCSSKPKKSKKERKKLLH---QKLLRISKAKETTDLSFPKSSSTPLLIHPKLFFQTK 74
           LL  C S  +  + + + LLH   +    I KA E  D ++     +         F   
Sbjct: 43  LLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYM 102

Query: 75  IQALDALLTDLEASVD-------NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNL 134
           I+ L     D EA++        +GL  D   ++ +   C +L  I  G  +H  +    
Sbjct: 103 IRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVG 162

Query: 135 LRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALAL 194
           L R+V ++  L+ +YA  G +  A ++FDE+T+R+    +WNS+ISGY+E G+ +DA+ L
Sbjct: 163 LERDVHINHSLIMMYAKCGQVGYARKLFDEITERDT--VSWNSMISGYSEAGYAKDAMDL 222

Query: 195 YFQMEEEGVEPDHFTFPRVLKACGGIGSIQIG 217
           + +MEEEG EPD  T   +L AC  +G ++ G
Sbjct: 223 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTG 252

HSP 2 Score: 59.7 bits (143), Expect = 5.2e-08
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 1


Query: 89  GLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENA 148
           G+  D    S++L  C  + A+  G ++        L+ N+ V++ L+ +Y   G +E A
Sbjct: 329 GVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388

Query: 149 HQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACG 208
            +VF+ M  +N +   WN++I+ YA  G  ++AL L+ +M    V P   TF  VL AC 
Sbjct: 389 LRVFEAMPVKNEA--TWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACV 448

Query: 209 GIGSIQIG 217
             G +  G
Sbjct: 449 HAGLVHQG 451

[Close]

BLAST of Cla006262 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 43/127 (33.86%), Postives = 77/127 (60.63%), Query Frame = 1


Query: 92  IDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQV 151
           +D  +F +L+ +C   RA   G +++ +  +++    V + +  L ++  FG + +A  V
Sbjct: 92  VDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYV 151

Query: 152 FDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQM-EEEGVEPDHFTFPRVLKACGGI 211
           F +M++RN+  F+WN L+ GYA+ G++++A+ LY +M    GV+PD +TFP VL+ CGGI
Sbjct: 152 FGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGI 211

Query: 212 GSIQIGE 218
             +  G+
Sbjct: 212 PDLARGK 216

[Close]

BLAST of Cla006262 vs. Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-16
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 82  LEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYAS 141
           L+  +  G+  +P  +SS L+ C    ++  G  +H +   N    NV V S L+ +YA 
Sbjct: 474 LKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAK 533

Query: 142 FGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFP 201
            G++  A +VFD M ++N+   +W ++I GYA  GF  +AL L ++ME EG E D + F 
Sbjct: 534 CGFVSEAFRVFDSMPEKNL--VSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFA 593

Query: 202 RVLKACGGI 211
            +L  CG I
Sbjct: 594 TILSTCGDI 600

HSP 2 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 36/119 (30.25%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 99  SLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKR 158
           S+L+ C + +A+  G ++H L+   +++ +V V + L+ +YA  G + +  +VFD M+ R
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348

Query: 159 NVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           N     W S+I+ +A  GF E+A++L+  M+   +  ++ T   +L+ACG +G++ +G+
Sbjct: 349 NT--VTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGK 405

[Close]

BLAST of Cla006262 vs. TrEMBL
Match: A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 16  MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 75

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 233

[Close]

BLAST of Cla006262 vs. TrEMBL
Match: A0A0A0L5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 205 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 264

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 265 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 320

HSP 2 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 140/218 (64.22%), Postives = 173/218 (79.36%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +S+ +    LSFPK+  TPL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VSQNQSNNSLSFPKTIPTPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I  K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IICHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

[Close]

BLAST of Cla006262 vs. TrEMBL
Match: V4SDA0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 136/218 (62.39%), Postives = 172/218 (78.90%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLF-CSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTP 60
           M+  L P  S  TSL++  C SK K+S+K+R+    QK  +IS+ + TT  S+PKSS TP
Sbjct: 1   MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRR----QKQQQISRNRITTFSSYPKSSPTP 60

Query: 61  LLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRL 120
           LL + K F +TK+QALD+++ DLE+SV NG+ +  + F+SLLE CYQL+A+ HGI+LHRL
Sbjct: 61  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL 120

Query: 121 IPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYE 180
           IPTNLLR+N G+SSKLLRLYA+FG ++ AHQVFD+M+ R   AF WNSLISGYAELG YE
Sbjct: 121 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 180

Query: 181 DALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           DA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE
Sbjct: 181 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214

[Close]

BLAST of Cla006262 vs. TrEMBL
Match: V4SDA0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 88  NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMEN 147
           NG   DP   SS+L     LR    G ++H  +    +  ++ +++ L+ +Y+  G ++ 
Sbjct: 289 NGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 348

Query: 148 AHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYF-QMEEEGVEPDHFTFPRVLKA 207
           A  +FD M +++V   +WNS+I  +++    +  + +YF QME +GV PDH TF  +L A
Sbjct: 349 ACWLFDHMPQKDV--VSWNSIIHAHSK----DHEVLIYFEQMERDGVLPDHITFVSLLSA 408

Query: 208 CGGIGSIQIGE 218
           C  +GS++ GE
Sbjct: 409 CAHLGSVKDGE 410

HSP 2 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 136/218 (62.39%), Postives = 172/218 (78.90%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLF-CSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTP 60
           M+  L P  S  TSL++  C SK K+S+K+R+    QK  +IS+ + TT  S+PKSS TP
Sbjct: 1   MVTILYPPSSFHTSLVIIHCGSKNKRSRKQRR----QKQQQISRNRITTFSSYPKSSPTP 60

Query: 61  LLIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRL 120
           LL + K F +TK+QALD+++ DLE+SV NG+ +  + F+SLLE CYQL+A+ HGI+LHRL
Sbjct: 61  LLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRL 120

Query: 121 IPTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYE 180
           IPTNLLR+N G+SSKLLRLYA+FG ++ AHQVFD+M+ R   AF WNSLISGYAELG YE
Sbjct: 121 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYE 180

Query: 181 DALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGE 218
           DA+ALYFQMEEEGVEPD FTFPRVLKAC G+G I++GE
Sbjct: 181 DAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVGE 214

[Close]

BLAST of Cla006262 vs. TrEMBL
Match: A0A067FH03_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009782mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 42/130 (32.31%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 88  NGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYMEN 147
           NG   DP   SS+L     LR    G ++H  +    +  ++ +++ L+ +Y+  G ++ 
Sbjct: 289 NGFDPDPVAISSILANASLLRI---GAQVHGWVLRRGVEWDLCIANSLIVVYSKDGKLDQ 348

Query: 148 AHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVLKAC 207
           A  +FD M +++V   +WNS+I  +++     +AL  + QME +GV PDH TF  +L AC
Sbjct: 349 ACWLFDHMPQKDV--VSWNSIIHAHSK---DHEALIYFEQMERDGVLPDHLTFVSLLSAC 408

Query: 208 GGIGSIQIGE 218
             +GS+++GE
Sbjct: 409 AHLGSVKVGE 410

HSP 2 Score: 270.0 bits (689), Expect = 2.8e-69
Identity = 144/222 (64.86%), Postives = 171/222 (77.03%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+  LQP      S  L CSSK KKS+K+++  L +K +  SK+   T L F KSS TPL
Sbjct: 252 MVALLQPPSFHFVSWTLSCSSKSKKSEKQKQ--LKRKQIHQSKS---TALPFRKSSPTPL 311

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LI+ K F QTK+QALDA++ DLEASV NG+ I  +IFSSLLE CYQL++I  GI++H L+
Sbjct: 312 LINHKPFTQTKLQALDAVVKDLEASVKNGMNITSEIFSSLLETCYQLKSIDQGIKIHNLV 371

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P  LLR+N G+SSKLLRLYAS G++E+AHQVFDEM+KRN SAF WNSLISGYAELG YED
Sbjct: 372 PKTLLRKNTGISSKLLRLYASCGHIESAHQVFDEMSKRNESAFPWNSLISGYAELGQYED 431

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEAAPPD 223
           ALA+YFQMEEEGVEPD +TFPR LKAC GIG IQIGEA   D
Sbjct: 432 ALAIYFQMEEEGVEPDRYTFPRALKACAGIGLIQIGEAVHRD 468

[Close]

BLAST of Cla006262 vs. NCBI nr
Match: gi|659077243|ref|XP_008439101.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 389.0 bits (998), Expect = 6.0e-105
Identity = 195/218 (89.45%), Postives = 206/218 (94.50%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISLQ    PSTSLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSSSTPL
Sbjct: 253 MLISLQLLTPPSTSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSSTPL 312

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIH K FFQ+KIQALDA+LTDLE S+DNGL IDP+IFSSLLE+CYQLRAIHHGIR+HRLI
Sbjct: 313 LIHSKPFFQSKIQALDAVLTDLETSIDNGLLIDPEIFSSLLELCYQLRAIHHGIRIHRLI 372

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYAS GYME+AHQVFDEM KRN SAFAWNSLISGYAELG YED
Sbjct: 373 PTNLLRRNVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYED 432

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA
Sbjct: 433 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 470

[Close]

BLAST of Cla006262 vs. NCBI nr
Match: gi|659077243|ref|XP_008439101.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 33/118 (27.97%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 442 EEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 501

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG +PD      +L
Sbjct: 502 RARKVFDQIVYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLL 557

HSP 2 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 265 MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 324

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 325 LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 384

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 385 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 444

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 445 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 482

[Close]

BLAST of Cla006262 vs. NCBI nr
Match: gi|778688525|ref|XP_011652769.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 454 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 513

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 514 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 569

HSP 2 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 193/218 (88.53%), Postives = 207/218 (94.95%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           MLISL     PS+SLLLFCSSKPKKSKKER+KLLHQKLLRISKAK++TDLSFPKSS TPL
Sbjct: 16  MLISLHLLTPPSSSLLLFCSSKPKKSKKERRKLLHQKLLRISKAKQSTDLSFPKSSPTPL 75

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           LIHPK FFQ+KIQALDA+LTDLEAS+DNGLFIDP+IFSSLLE+CYQL+AIHHGIR+HRLI
Sbjct: 76  LIHPKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLI 135

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           PTNLLRRNVG+SSKLLRLYASFGYME+AHQVFDEM  RN SAFAWNSLISGYAELG YED
Sbjct: 136 PTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYED 195

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           ALALYFQMEEEGVEPD+FTFPRVLKACGGIGSIQIGEA
Sbjct: 196 ALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEA 233

[Close]

BLAST of Cla006262 vs. NCBI nr
Match: gi|700202147|gb|KGN57280.1| (hypothetical protein Csa_3G176270 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 87  DNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLIPTNLLRRNVGVSSKLLRLYASFGYME 146
           + G+  D   F  +L+ C  + +I  G  +HR +  +    +V V + L+ +Y+  G + 
Sbjct: 205 EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIV 264

Query: 147 NAHQVFDEMTKRNVSAFAWNSLISGYAELGFYEDALALYFQMEEEGVEPDHFTFPRVL 205
            A +VFD++  +++   +WNS+++GY   G + +AL ++ QM +EG EPD      +L
Sbjct: 265 RARKVFDQIEYKDI--VSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLL 320

HSP 2 Score: 274.6 bits (701), Expect = 1.7e-70
Identity = 140/218 (64.22%), Postives = 173/218 (79.36%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +S+ +    LSFPK+  TPL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VSQNQSNNSLSFPKTIPTPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I  K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IICHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

[Close]

BLAST of Cla006262 vs. NCBI nr
Match: gi|645257364|ref|XP_008234381.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Prunus mume])

HSP 1 Score: 273.5 bits (698), Expect = 3.7e-70
Identity = 138/218 (63.30%), Postives = 173/218 (79.36%), Query Frame = 1


Query: 1   MLISLQPSISPSTSLLLFCSSKPKKSKKERKKLLHQKLLRISKAKETTDLSFPKSSSTPL 60
           M+ +LQP +S  T+ L  CSSK KK+KK+++         +++ +    LSFPK+   PL
Sbjct: 1   MVTTLQP-LSFHTAKLSICSSKSKKNKKQKQ---------VNQNQSNNSLSFPKTIPNPL 60

Query: 61  LIHPKLFFQTKIQALDALLTDLEASVDNGLFIDPQIFSSLLEVCYQLRAIHHGIRLHRLI 120
           +I+ K   QTK+QALDA++ DLEA++  G+ +D + F+SLLE CYQ +A+ +G+R+HRLI
Sbjct: 61  IIYHKPHSQTKLQALDAVVNDLEAAIGKGINVDTETFASLLETCYQFQAMDYGLRVHRLI 120

Query: 121 PTNLLRRNVGVSSKLLRLYASFGYMENAHQVFDEMTKRNVSAFAWNSLISGYAELGFYED 180
           P ++LRRNVG+SSKLLRLYAS GY+E AHQVFDEM KR+VSAFAWNSLISGYAELG YED
Sbjct: 121 PRSVLRRNVGISSKLLRLYASHGYIEEAHQVFDEMPKRDVSAFAWNSLISGYAELGLYED 180

Query: 181 ALALYFQMEEEGVEPDHFTFPRVLKACGGIGSIQIGEA 219
           A+ALYFQMEEEGVEPD FTFPRVLKACGGIG IQIGEA
Sbjct: 181 AMALYFQMEEEGVEPDRFTFPRVLKACGGIGFIQIGEA 208

The following BLAST results are available for this feature:

BLAST of Cla006262 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP337_ARATH	1.3e-62	58.69	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
PP115_ARATH	4.7e-17	28.21	Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidop...	[more]
PP184_ARATH	8.1e-17	30.66	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN...	[more]
PPR45_ARATH	2.4e-16	33.86	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
PP319_ARATH	3.1e-16	34.88	Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla006262 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M0_CUCSA	1.2e-104	88.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1	[more]
A0A0A0L5M0_CUCSA	2.0e-06	28.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176270 PE=4 SV=1	[more]
V4SDA0_9ROSI	2.2e-69	62.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1	[more]
V4SDA0_9ROSI	2.8e-08	32.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004726mg PE=4 SV=1	[more]
A0A067FH03_CITSI	2.5e-09	32.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009782mg PE=4 SV=1	[more]

BLAST of Cla006262 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077243\|ref\|XP_008439101.1\|	6.0e-105	89.45	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|659077243\|ref\|XP_008439101.1\|	6.4e-06	27.97	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|778688525\|ref\|XP_011652769.1\|	2.9e-06	28.81	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
gi\|700202147\|gb\|KGN57280.1\|	2.9e-06	28.81	hypothetical protein Csa_3G176270 [Cucumis sativus]	[more]
gi\|645257364\|ref\|XP_008234381.1\|	3.7e-70	63.30	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0006221	pyrimidine nucleotide biosynthetic process
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004127	cytidylate kinase activity
molecular_function	GO:0009041	uridylate kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006262	Cla006262	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006262	Cla006262.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006262.1.cds1	Cla006262.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 135..160 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 163..207 score: 6.1
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 164..196 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 161..195 score: 12.792coord: 93..127 score: 5.009coord: 128..158 score: 7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 3..218 score: 3.3
None	No IPR available	PANTHER	PTHR24015:SF497	SUBFAMILY NOT NAMED	coord: 3..218 score: 3.3