CsaV3_3G010880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G010880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A
Locationchr3 : 8622738 .. 8626436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGTGACAGTCACAGAATTTACAAAAATTGGATCACTTTTAAAAACCAAATCAACAGAACCGAATTTCACTGAATTCGAAAAATATGGTTCGGTTCGACTTAAAGGAATTACGAACCAAATCGTTTCTAATTCAGGGTAAAAAACGAGCAAAATCAGATTTAAAACCGGTGAATCAAACAATTTTTAACTAAAAAATACATATTGACAAAAAAAAAACCTAAATAATACATATTGAGAAAGCCAAAATCGAAAACCAAAAACCAAATTCCATATAGCAGTGGAGTCTGAATCAGTTTGAACCGAAAATCGGTTCAGTTGCATTTAAAAATTTGAACTTTTTCGTTTGGTTTGACCATCGACCGAACCGAACCGTGCTCAACTCGTTGTGGTGTGGCAGCCAACCCTACTCCTGTTTCTTCTCTTTTTCATATCAACCGTTCCCATCTTATTCCTCTCTCTACTCTCACTCCCCAAGCTGCCATTTGCAAAATGCTTCCATCTCGAGCTCTATAATCAACCCTTTGTTTTTTTTGTTCTTCAATTCGTAATTTTGAAATCCCTGTTTTTGTTGAATTTATTTGTTCAAATCGTTCTGATTTTGAAGCCCAGAAGCTTGTACGACACCAATGGCGTTTGCGTCTGGTTCCGTGATCCGCAATGCAACCAATCTCTCTAATAACCTTCTTCGTTCCTTCTCCACTTCCATCAAAACCGCTCAACATAACAATCACCTGCAGACCCAAGAATACTTGGAGGCGAACAGCTTTATTGGTAGCTGGCAGGCCCCGAAAAACCCCAAGGAAGCGCAGGCCAGACTTGCTCGGCTCCGAAGGGAGTATGCCAAGCAGGTGAAACAGGTACGTAAGAATTACATCCAGGAGGTTGAACTCTTGAGGCTCGAAAGGGAGCAGAAGGACGAAGCCAAGAAAGAAGCGCTTAGGGTTGCCAATGAGGAACGCAAGAAGCTTAAAGCTGAAGCTGCTAAAGTCCGAGCTGAAGAGCGTAAGGTTGCTGATGAAGAGTTCCGACTGACTTTGGTAAGTCATTTCCCCATCTTCTTTAACATTTACGTCGTGAGATATTATTGCTTGAAGTTTTAATTGGTAAGAATTTGGTTGGAAATGCATCCATTACTTCGAATCTATATGAATTCTGAGAGAAGTCTGTTAATTTTTCTTTTAATGATTGGAAGGAGGGAATTTTTTTGTCTCTGGTTCAATTCCTTGCTTGAATTGGTATATTTATGGTTATATGTTTTGCTGCTCTCTTGTTCTTGTCTTAACTTCGCTAAATGTAAATGGGTGCTTTTGGTTTTCTTCGTCTCATCTCTGCTTACATACTCAACGCTTCTCTTAGTCCGACTTTGCCATTTTGGTAATTCAATAGTGGGAACTTTTAATTTGATATGCTCATTGAATGATTATGTGGTGCTTTTGAACTAAATTTGAGTCCCCAAGGGTCACAACGATGTTGAAGAGTTGCCAGAAGGTCGAGGTTCTGCTAACGAACTCTCCTATTATGTCGAGAATTTAAACATTTGAAGTCAGGATAATACTCGTACGTGAAGTGAATGCTTTCATGCCAATTGCCTATTATTATCAATCATGTGTGTTAACTGTTCATCATATGGGGAAAATCTGGAGCAAAACTTTAGTTGTGATGTTCTATATCTGAGGTCCCCAATCTTCCTTTTTCAAAAGCTTGTCAGCCGAATTTTATTCAATAGGTGCCATGGTTTTGGGAGTTCCTTGATCATTTCCTGTTCTGGACCAAAGTTTGAGCTGTTATGTTCTATAGTGAAATGTTGAAATTACAAAATTATATGAAAAGGAAGAAAATTCCCATTCAGATAAAACACAGAAAGTTTCTCTAATTGTTTGGATTGGAGTCCACGTTATAGTCGCTGAAAAGGAGGACAGGGTTGTCAAGAAGGCTTCTGTTTTCTTCTTGTTTTTGAAACTGTCATTTCTTCTTCTCTTGAAAATGATTCTGGCGGTTGACACACGTCTTATGCAAACCAGTAATTTAGAATCTGAGATTAGGAGCTTGAGATTTGAAACTTCATGTAGCTTGATGGGATTTCTTAGGAATAGAACAAATGAAAGTCAGATCTAGGTAGACTTTATTAGCTTCAAAAGAATGTTCTAGTCATTGTTTGTTTTCCTTAAGCTGGACTTTTCCAACATAATAAATTGTTTCCACTTCTTGAGAAGAGTTTGAAATTTAAGCTTTTGGGACAAACTAAACTTTGACCAATGTTCTACGGAAAACATTCATCCACTAAGGCTTCAGGAGTGTGACAAAATCTAGTGATCAATTGACAAGATTATCAATTTTGTAAGGTCTCGGTCACCCAAGTAAAATTTCCCATCTTATGGGAATTCATGGAAGGGACCATTGGGCAAACAAGTTTCAGAGTGGCCAAGTTCTTCATTCATTTTATTGAATATTTTCCTGTGCTTGGGCAATTCCTCTAATCCCTGAGGATTAATTGTAAGGCCCCCTTATTGCCCTTGATTTTAGTGGGTGCTAAATGGGGAAGTGGCCTCTCTTGAAGAGACTTTTCACTCTTCTCAATATTGAGAGTTCAATTGTACAATTATTTCGGATTGATATATTAAGAGAATATCGATATTAAAGGATATTTCTACAAGTCAAAAAACTTAGAAAAATTGTTTAAATTAATATATGAGTTATTTTTACTCTATTAAACTAAGTTATGGATATTGTTACTAGTATTTCTATTCATATTGAATTAGATAGACGTCAATTTTTTATGTTTTGCAATCATTTGCAAAACAGATAAAAAGATATCCATAGATGAATGTCAATGTCGAACTTTTTTATTCATGGATGTATCGACTGATATTTTGACAATATCAACGGATATTTTCGTCCTTGCTAAGAAGGATTTCAACCATGTTCTAGTTTTCTCATCTTTTCTTGCAATTCACTCAATAATCTAACGTGGCTCAATTGATGTGATTATATAGGTGAAAGAAAGAGCTGAGAAGTTGGAGCATTGGAGAATGATGGAAAAGAAGAGGGAAGAAAAAAAGAAAGAAAAGAAGGAGCTACTAAGACGGCAGAGTTCCATGTGGGTTGATGAAAATAAATTGGAAGAGAAGCTATTAGAAGCCATTGTTAATACCATCACTCTCTGAGCTTTCTTACTTTCCAGTGATAATTGCCCAACTTTCTCTTACGTTTCTTTGTTGGAAGCAATTTTTAGTTACTGGATTCTAGCTGAGAAGTTTCTGCATAATCCAAGTTTTTGACTCTTGCGATGAAGCACTCGACATCTTGTACACCCTTTTGTTACTGTTATTATTATCGTTTGGGGGGAAATCAGTTTCTACTCTTTGATGTTGTTTCTGTTATTATTATCATTAGGGGGGAAAGTCAGTTTCTTCTACACTTTGATGTTGTAGCATTTAAAACTTCAAACTAATAATTCTATAATTCTATCAATTTAGAGCATGTTATCTTCATTACAAAGTTATAGAATTTTAATTCTCTTCTTGTCTAATGGGAGATTGTTTTGTAACTATGGCTTGAGATTCTTCCTCCTCCTTAATTTAAGAAAGACAGTGAACCAGCCAAAAGCAATCAAAAGCAAGCGTAAGATTCAAATCCTTTCTTGTACTAAAAAGGATAATTTATGGCTATATTTACTTGATTTCTTCTTAACCCAAG

mRNA sequence

ATGGCGTTTGCGTCTGGTTCCGTGATCCGCAATGCAACCAATCTCTCTAATAACCTTCTTCGTTCCTTCTCCACTTCCATCAAAACCGCTCAACATAACAATCACCTGCAGACCCAAGAATACTTGGAGGCGAACAGCTTTATTGGTAGCTGGCAGGCCCCGAAAAACCCCAAGGAAGCGCAGGCCAGACTTGCTCGGCTCCGAAGGGAGTATGCCAAGCAGGTGAAACAGGTACGTAAGAATTACATCCAGGAGGTTGAACTCTTGAGGCTCGAAAGGGAGCAGAAGGACGAAGCCAAGAAAGAAGCGCTTAGGGTTGCCAATGAGGAACGCAAGAAGCTTAAAGCTGAAGCTGCTAAAGTCCGAGCTGAAGAGCGTAAGGTTGCTGATGAAGAGTTCCGACTGACTTTGGTAAGTCATTTCCCCATCTTCTTTAACATTTACGTCGTGAGATATTATTGCTTGAAGTTTTAA

Coding sequence (CDS)

ATGGCGTTTGCGTCTGGTTCCGTGATCCGCAATGCAACCAATCTCTCTAATAACCTTCTTCGTTCCTTCTCCACTTCCATCAAAACCGCTCAACATAACAATCACCTGCAGACCCAAGAATACTTGGAGGCGAACAGCTTTATTGGTAGCTGGCAGGCCCCGAAAAACCCCAAGGAAGCGCAGGCCAGACTTGCTCGGCTCCGAAGGGAGTATGCCAAGCAGGTGAAACAGGTACGTAAGAATTACATCCAGGAGGTTGAACTCTTGAGGCTCGAAAGGGAGCAGAAGGACGAAGCCAAGAAAGAAGCGCTTAGGGTTGCCAATGAGGAACGCAAGAAGCTTAAAGCTGAAGCTGCTAAAGTCCGAGCTGAAGAGCGTAAGGTTGCTGATGAAGAGTTCCGACTGACTTTGGTAAGTCATTTCCCCATCTTCTTTAACATTTACGTCGTGAGATATTATTGCTTGAAGTTTTAA

Protein sequence

MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNPKEAQARLARLRREYAKQVKQVRKNYIQEVELLRLEREQKDEAKKEALRVANEERKKLKAEAAKVRAEERKVADEEFRLTLVSHFPIFFNIYVVRYYCLKF
Homology
[Close]
BLAST of CsaV3_3G010880 vs. NCBI nr
Match: XP_004133989.1 (PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus] >KGN56727.1 hypothetical protein Csa_3G130330 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
           XXXXXXXXXXXXXXXXXXXXXXXXXX LLRLEREQKDEAK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXELLRLEREQKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. NCBI nr
Match: XP_008438350.1 (PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAFASGSVIRNATNLSNNLLRSFSTSIK+A +NNHLQT EYLEANSFIGSWQAPK+XXXX
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKSAHNNNHLQTHEYLEANSFIGSWQAPKDXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
           XXXXXXXXXXXXXXXXXXXXXXXXXX LLRLE+EQKDEAK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXELLRLEKEQKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. NCBI nr
Match: XP_023539036.1 (vicilin-like seed storage protein At2g18540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAF S S IRNATN S+ LLRSFSTS K+A HNNH QT +YLEAN+F+GSW+APK+    
Sbjct: 1   MAFVSRSAIRNATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
                                      LLRLE+++KDEAK
Sbjct: 61  QARLALLRRDYAKKVKQVRKNYIQEGELLRLEKQRKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. NCBI nr
Match: XP_023539037.1 (uncharacterized protein LOC111799790 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAF S S IRNATN S+ LLRSFSTS K+A HNNH QT +YLEAN+F+GSW+APK+    
Sbjct: 1   MAFVSRSAIRNATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
                                      LLRLE+++KDEAK
Sbjct: 61  QARLALLRRDYAKKVKQVRKNYIQEGELLRLEKQRKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. NCBI nr
Match: XP_022924252.1 (UPF0329 protein ECU05_1680/ECU11_0050-like [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MA  S S IR ATN+SNNLLRSFSTSIK+A HNNH QT +YLEA++F+GSW+APK+    
Sbjct: 1   MALTSRSAIRTATNVSNNLLRSFSTSIKSAHHNNHQQTHKYLEASAFVGSWEAPKDPKEA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
                                      +LRLE+++KDEAK
Sbjct: 61  QAKLALLRRDYAKQVKQVRKNYIQEVEVLRLEKQRKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. TrEMBL
Match: tr|A0A0A0L7X4|A0A0A0L7X4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130330 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.6e-25
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
           XXXXXXXXXXXXXXXXXXXXXXXXXX LLRLEREQKDEAK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXELLRLEREQKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. TrEMBL
Match: tr|A0A1S3AWS6|A0A1S3AWS6_CUCME (LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A OS=Cucumis melo OX=3656 GN=LOC103483476 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXX 60
           MAFASGSVIRNATNLSNNLLRSFSTSIK+A +NNHLQT EYLEANSFIGSWQAPK+XXXX
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKSAHNNNHLQTHEYLEANSFIGSWQAPKDXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXLLRLEREQKDEAK 101
           XXXXXXXXXXXXXXXXXXXXXXXXXX LLRLE+EQKDEAK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXELLRLEKEQKDEAK 100

[Close]
BLAST of CsaV3_3G010880 vs. TrEMBL
Match: tr|V4U4T4|V4U4T4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005973mg PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-05
Identity = 31/87 (35.63%), Postives = 41/87 (47.13%), Query Frame = 0 

Query: 14  NLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXXXXXXXXXXXXXXX 73
           ++  NL RSFS++      NNH Q  ++ E NSFIGSW APKN                 
Sbjct: 7   SIRRNLTRSFSSTAAPVTRNNHQQNHQFSEPNSFIGSWDAPKNPKEAEKKLAQLRRDYAK 66

Query: 74  XXXXXXXXXXXXXXLLRLEREQKDEAK 101
                         L+RLE+++KDEAK
Sbjct: 67  QIKEMRKGYIEEMELMRLEKQRKDEAK 93

[Close]
BLAST of CsaV3_3G010880 vs. TrEMBL
Match: tr|A0A2H5P357|A0A2H5P357_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_097810 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-05
Identity = 31/87 (35.63%), Postives = 41/87 (47.13%), Query Frame = 0 

Query: 14  NLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXXXXXXXXXXXXXXX 73
           ++  NL RSFS++      NNH Q  ++ E NSFIGSW APKN                 
Sbjct: 7   SIRRNLTRSFSSTAAPVTRNNHQQNHQFSEPNSFIGSWDAPKNPKEAEKKLAQLRRDYAK 66

Query: 74  XXXXXXXXXXXXXXLLRLEREQKDEAK 101
                         L+RLE+++KDEAK
Sbjct: 67  QVKEMRKGYIEEMELMRLEKQRKDEAK 93

[Close]
BLAST of CsaV3_3G010880 vs. TrEMBL
Match: tr|A0A067DCH9|A0A067DCH9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g047703mg PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-05
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 0 

Query: 14  NLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNXXXXXXXXXXXXXXXXX 73
           ++  NL RSFS++      NNH Q  ++ E NSFIGSW APKN                 
Sbjct: 7   SIRRNLTRSFSSTAAPVTRNNHQQNHQFSEPNSFIGSWDAPKNPKEAEKKLAQLRRDYAK 66

Query: 74  XXXXXXXXXXXXXXLLRLEREQKDEAK 101
             XXXXXXXXXX  L+RLE+++KDEAK
Sbjct: 67  QIXXXXXXXXXXMELMRLEKQRKDEAK 93

The following BLAST results are available for this feature:
BLAST of CsaV3_3G010880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004133989.11.0e-2499.00PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus] >KGN56727.1 h... [more]
XP_008438350.12.3e-2193.00PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis m... [more]
XP_023539036.15.5e-1550.00vicilin-like seed storage protein At2g18540 isoform X1 [Cucurbita pepo subsp. pe... [more]
XP_023539037.15.5e-1550.00uncharacterized protein LOC111799790 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022924252.17.2e-1549.00UPF0329 protein ECU05_1680/ECU11_0050-like [Cucurbita moschata][more]
BLAST of CsaV3_3G010880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G010880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G010880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7X4|A0A0A0L7X4_CUCSA6.6e-2599.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G130330 PE=4 SV=1[more]
tr|A0A1S3AWS6|A0A1S3AWS6_CUCME1.5e-2193.00LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A OS=Cucumis melo OX=36... [more]
tr|V4U4T4|V4U4T4_9ROSI9.9e-0535.63Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005973mg PE=4 ... [more]
tr|A0A2H5P357|A0A2H5P357_CITUN9.9e-0535.63Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_097810 PE=4 SV=1[more]
tr|A0A067DCH9|A0A067DCH9_CITSI9.9e-0547.13Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g047703m... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G010880.1CsaV3_3G010880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..131
NoneNo IPR availablePANTHERPTHR36402FAMILY NOT NAMEDcoord: 13..139

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G010880CSPI03G10770Wild cucumber (PI 183967)cpicucB144
CsaV3_3G010880Cucsa.256520Cucumber (Gy14) v1cgycucB387
CsaV3_3G010880CmaCh14G019000Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G010880CmoCh14G019530Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G010880CmoCh06G012470Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G010880Cp4.1LG03g18060Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G010880Cp4.1LG08g02750Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G010880CsGy3G010840Cucumber (Gy14) v2cgybcucB117
CsaV3_3G010880Carg24768Silver-seed gourdcarcucB0200
CsaV3_3G010880Carg06297Silver-seed gourdcarcucB1003
CsaV3_3G010880Cla021413Watermelon (97103) v1cucwmB239
CsaV3_3G010880MELO3C006306Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G010880Lsi05G018490Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G010880MELO3C006306.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G010880Cla97C05G083890Watermelon (97103) v2cucwmbB206
CsaV3_3G010880Bhi01G000156Wax gourdcucwgoB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G010880Silver-seed gourdcarcucB0260
CsaV3_3G010880Silver-seed gourdcarcucB1126
CsaV3_3G010880Cucumber (Gy14) v2cgybcucB079
CsaV3_3G010880Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G010880Cucurbita maxima (Rimu)cmacucB0624
CsaV3_3G010880Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G010880Cucurbita maxima (Rimu)cmacucB0981
CsaV3_3G010880Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G010880Cucurbita moschata (Rifu)cmocucB0608
CsaV3_3G010880Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G010880Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G010880Cucurbita pepo (Zucchini)cpecucB0308
CsaV3_3G010880Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G010880Wild cucumber (PI 183967)cpicucB093
CsaV3_3G010880Wild cucumber (PI 183967)cpicucB100
CsaV3_3G010880Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G010880Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G010880Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G010880Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G010880Watermelon (97103) v2cucwmbB233
CsaV3_3G010880Wax gourdcucwgoB254