CmoCh06G012470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G012470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPolyamine-modulated factor 1-binding protein 1, putative
LocationCmo_Chr06 : 9423235 .. 9426593 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAGCCTAGAGTTTGTGCCTCTAATCAGCTCGACAACAATGGCGTTTGCGTCTCGTTCTGCGATCCGCAAAGCAACCAATTTCTCCGATTATCTTCTGCGATCTTTCTCCACTTCCACTAAATCCGCTCACCATAACAATCACCAGCAAACGCACAAATACTTGGAGGCGAACGCCTTCGTTGGCAGCTGGGAGGCGCCGAAAGATCCCAAGGAAGCGCAGGCCAGGCTCGCTCTGCTTCGTAGGGATTACGCCAAGAAGGTGAAGCAGGTGCGGAAGAATTACATTCAGGAGGTCGAGCTCTTGAGACTCGAAAAGCAGCGTAAGGACGAAGCCAAGAGAGAGGCGCTTAGAGTGGTCAATGAGGAACGTAAGAAGCTTAAAGCCGAAGCTGCGAAAGCCCGAGCCGAAGAGCGTAAGGTTGCCGACGAAGAGTTCCGACAGACTTTGGTAAGCGATTTCCTTGTCTTCTTTAACAATTTCTTCTTCAGATGTTATTGTTTGAAGATTTTGATTGAAATGAATTTGCCTGCAAATGTATCCATTGCGTCTCCAAATTTTCTGGATTCAATCTCTGCTCTGAGTTTAATCGAACAGTTTCCTTTGCTTGAATTTGTCTGCTTACTCTTCCATGCTAAATGTTAATAGTGCTGCTCTGGTTTTCGTCTTATCTTTGCTTCCTCAATGCTTCTCGTAGTCTGTTTTTGGTAATTTTTGGTAATTTAATTGATGAACTTTGAATCTTTCAAAAGAATTGCCCATTGCAAATCAAAGTAATCTTTAAGAGGGTGGGGTAGCAAAAAAATTGCAAATCAGAGTACAAATGCTGTAATCTTCTAAAGGGTTGTGAACATTTAGACCAATATAAATGTGAGATCACAAGTCGGTTGTAGAGGAGAATGAAGCATTCTTTATAAGGGGTGGAAACCTCTCCCTAATAGACAATAGAAGTGTTTTAAAATTGTGAGGCTGACGACGATATGTAACGGGCCAAAGAGGACAATATGTGTTAGTGGTAGGCTTAAGCCAGATACGGGAGCTGTATGTTGGGTTATGGAGCATACCATATTACTATATATAGTAAACTGAACCATATATATATCCTCTCAAACAGAGCTTCGAAAATGTACTTTATGTATTTTCTTAGTGTACATACTCAAAGTCATCAATATAAACCTTTGGCCAATATTTATGTTTATCTAGATCGAGTGTGTGCGTTGTTGTGCGATCCTAACACGGTGTGCCAGCGAGGATGCTAGGCCTCCAAGGAGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACAAAACATTCTTTATAACTACGAATTGGAGAGGGGAACAAAACATTCTTTATAACTACGAAAAGGAAGTGAAAAATAACCTTAGGAATACAACTTATATTTCATAGAAAGAAAACAAAAGACATGAGATCTTTATTCCACAAACTCGATGGCCTCTTGATCTTACCTATCTGCCTCCATTTTTGGCTTTCCTTGGAGATCACAACCTTTAGCTGATGCCAAAGCAATTTCCTATGTTCTTTGTTTACCAATATCAAATGCAACCTCTTTGATTCTTCCTTCTTATCCAGCTGAACAATAAATCCAATGAACCCTATGAATTTCAAGAACACTTCAAACTCCACTTCTTGAGAAGAGTTTTGAAGGCTTTAAGCTTTTGAGTAAGACAAAACCAACTCAACCAATGTTCAATGGAAATATTCACACTAAGGCTTCAAGAATGGCACAAAATCTTGTGATCAAGTGAAAAACATATCAAATATGAAAGAAATTGGTCACTGAGTATAATTTCCCAGCTCCCATAAAAATTGGGAAGTTGAGGAATAAACCATTGAACAAACAAATTTTAGAACAGCTAGGTCTTCAATAGAGGCTTAACTCTCTTATCTTTCTCATTTAGGGCTCCGAATTAATCACAAACTTTACAAAGGGGAGGGGTTTTAACTCTCTAAAAGGGGCTCAGTAACTCACATTCAAGTCACCTTCTCAAATATCCCTATGTATAATATACCTCTTTTCACATGGTTCGAAGGTGATTGTTTCGTTGAGAGGCCCTTTGAGAACTTCCTTTTACGAGTGGAAGTCAAATAAGGAGGTTGCCATTTGGTTAATTGGACTAAAGTCTAAATTTCCCTTTATCTTGGTGGGCCTGGTATTGATGTCTGTGGCCAGAGGAAAATCCTGCTTGTTGATACTCATAGAGATAACAGATGCACAAATTTGCAAAGTCAACTTTCAATAGAACATTTAGTTTCTGATTATTATTATTATCTATTACATCTTGGTGTTATCGAAATCATCTACATATACAATTACGCCTTATGGACCTTGTCATATTGACATTACGTTGTCACGTTTTCTGGATTGATTTGATTGACATACTCTTTTATGTAGTGTATGTAAAAGACTAGTTTATGCTTCATAGGAATTTATCAAAAAATAAATAACTACGTAAGTAGCTTAGTGGTAGAGCGGTCGACTGTTAATTGATTGGTCGTAGGTTTGAATCATACTTGGGGAGATTTAATTCCTTCTGAGTTTTAGAATTTGGAATGAAAGGGTTCGCTCTGACCTTTAAGAGTAGGTAACCCGTTTGTTTCTATTGCATTCTATCTCATCGTATTAAATTCTGTTATGCAATAGTTGAGAATCACCGTCAATACCTCGGTGTAGGTCTGGGATATAATCCTTTGTTCCACCTCTCTATTTACAACTATCTAAACATAAAGGTCAGTCGGTAGGTACAAAAATTTGACTTCAGTTGTCTTATGACCTTTGATTGGATTGACCAGTCTTGAAATTACTTCCTAAGGAGGATTTTAGTTCAAAAGGAAGGAAACCATTTGGTTGTTTTGGAGACATGCCCTATGTTATTTGTTTTTATCTTTTTTCTTGCATTTCATTCTAAAAGGGCTTACATTCGATACGATGATATCCACTGTTTTGAGACTCAATGCAGCCACGTAACACGATTTGATTGGGTGCCATATGCAGATGAAAGAACGAGCCGAGAAGCTCGAGCATTGGAGAATGATGGAAAAGACGAGGGAAGAAAAGAAGAACGAAAAGAACGAGCTAATAAGACGCCAGAGTCCCATGTGGATTGATGAGAAGAAGTTGGAAGAGAAGCTCTTAGACGCCATTGTTAATACCACCCCTCTCTGAGTTTTATTTCCGAGTTTTATTTAGAGAATTACTCTTACATTGAATTTTTGCATAACCAAGTTTTTGTTCACTTTAGTTGGGTTAAGTATTTGAACTTAATGGAATGTTAGTTCAAACTACACCTCTAATTTGTGATGAAAGCAGTTGACATCTCGAATAAAATGGAG

mRNA sequence

TAGAGCCTAGAGTTTGTGCCTCTAATCAGCTCGACAACAATGGCGTTTGCGTCTCGTTCTGCGATCCGCAAAGCAACCAATTTCTCCGATTATCTTCTGCGATCTTTCTCCACTTCCACTAAATCCGCTCACCATAACAATCACCAGCAAACGCACAAATACTTGGAGGCGAACGCCTTCGTTGGCAGCTGGGAGGCGCCGAAAGATCCCAAGGAAGCGCAGGCCAGGCTCGCTCTGCTTCGTAGGGATTACGCCAAGAAGGTGAAGCAGGTGCGGAAGAATTACATTCAGGAGGTCGAGCTCTTGAGACTCGAAAAGCAGCGTAAGGACGAAGCCAAGAGAGAGGCGCTTAGAGTGGTCAATGAGGAACGTAAGAAGCTTAAAGCCGAAGCTGCGAAAGCCCGAGCCGAAGAGCGTAAGGTTGCCGACGAAGAGTTCCGACAGACTTTGATGAAAGAACGAGCCGAGAAGCTCGAGCATTGGAGAATGATGGAAAAGACGAGGGAAGAAAAGAAGAACGAAAAGAACGAGCTAATAAGACGCCAGAGTCCCATGTGGATTGATGAGAAGAAGTTGGAAGAGAAGCTCTTAGACGCCATTGTTAATACCACCCCTCTCTGAGTTTTATTTCCGAGTTTTATTTAGAGAATTACTCTTACATTGAATTTTTGCATAACCAAGTTTTTGTTCACTTTAGTTGGGTTAAGTATTTGAACTTAATGGAATGTTAGTTCAAACTACACCTCTAATTTGTGATGAAAGCAGTTGACATCTCGAATAAAATGGAG

Coding sequence (CDS)

ATGGCGTTTGCGTCTCGTTCTGCGATCCGCAAAGCAACCAATTTCTCCGATTATCTTCTGCGATCTTTCTCCACTTCCACTAAATCCGCTCACCATAACAATCACCAGCAAACGCACAAATACTTGGAGGCGAACGCCTTCGTTGGCAGCTGGGAGGCGCCGAAAGATCCCAAGGAAGCGCAGGCCAGGCTCGCTCTGCTTCGTAGGGATTACGCCAAGAAGGTGAAGCAGGTGCGGAAGAATTACATTCAGGAGGTCGAGCTCTTGAGACTCGAAAAGCAGCGTAAGGACGAAGCCAAGAGAGAGGCGCTTAGAGTGGTCAATGAGGAACGTAAGAAGCTTAAAGCCGAAGCTGCGAAAGCCCGAGCCGAAGAGCGTAAGGTTGCCGACGAAGAGTTCCGACAGACTTTGATGAAAGAACGAGCCGAGAAGCTCGAGCATTGGAGAATGATGGAAAAGACGAGGGAAGAAAAGAAGAACGAAAAGAACGAGCTAATAAGACGCCAGAGTCCCATGTGGATTGATGAGAAGAAGTTGGAAGAGAAGCTCTTAGACGCCATTGTTAATACCACCCCTCTCTGA
Homology
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BLAST of CmoCh06G012470 vs. TrEMBL
Match: A0A0A0L7X4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130330 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-72
Identity = 156/193 (80.83%), Postives = 173/193 (89.64%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MAFAS S IR ATN S+ LLRSFSTS K+A HNNH QT +YLEAN+F+GSW+APK+PKEA
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           QARLA LRR+YAK+VKQVRKNYIQEVELLRLE+++KDEAK+EALRV NEERKKLKAEAAK
Sbjct: 61  QARLARLRREYAKQVKQVRKNYIQEVELLRLEREQKDEAKKEALRVANEERKKLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RAEERKVADEEFR TL+KERAEKLEHWRMMEK REEKK EK EL+RRQS MW+DE KLE
Sbjct: 121 VRAEERKVADEEFRLTLVKERAEKLEHWRMMEKKREEKKKEKKELLRRQSSMWVDENKLE 180

Query: 181 EKLLDAIVNTTPL 194
           EKLL+AIVNT  L
Sbjct: 181 EKLLEAIVNTITL 193

[Close]
BLAST of CmoCh06G012470 vs. TrEMBL
Match: M5XYZ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012021mg PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-61
Identity = 134/193 (69.43%), Postives = 165/193 (85.49%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MA  SRS  R         LRSFSTSTK +HHN+HQQ H+Y + N+F+G WEAPKDPKEA
Sbjct: 1   MATTSRSLYRTLR------LRSFSTSTKPSHHNSHQQNHQYTDPNSFIGCWEAPKDPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           +A+LA LRRDYAK+VK+VRK YIQEVEL+RLEK RKDEA++EALR+ NEERK+LKAEAAK
Sbjct: 61  EAKLAQLRRDYAKQVKEVRKEYIQEVELMRLEKLRKDEARKEALRLQNEERKRLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RA++R+VA++EFRQTL+KERAEKLE+W+M EK REEKK EKNEL+RRQS +WI+E +LE
Sbjct: 121 VRAQQREVAEQEFRQTLLKERAEKLENWKMKEKMREEKKKEKNELLRRQSSLWINEPELE 180

Query: 181 EKLLDAIVNTTPL 194
           +K+L+AIV+TTPL
Sbjct: 181 KKILEAIVDTTPL 187

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BLAST of CmoCh06G012470 vs. TrEMBL
Match: A0A067KIA2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10318 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-54
Identity = 115/173 (66.47%), Postives = 151/173 (87.28%), Query Frame = 1 

Query: 21  RSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEAQARLALLRRDYAKKVKQVRK 80
           R FS++  ++HHN+H+ THK+LE N+F+GSWEAPK+PKEA A+LA LR +YAK+VK++RK
Sbjct: 17  RFFSSTANNSHHNSHKTTHKFLEPNSFIGSWEAPKNPKEAAAKLARLRIEYAKQVKELRK 76

Query: 81  NYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAKARAEERKVADEEFRQTLMKE 140
            YI+E++L+R+EKQRKDEAK+EA+RV NEERKKLKAEAAK RA+ERK+A+EEFRQ L+KE
Sbjct: 77  EYIKEMDLMRIEKQRKDEAKKEAIRVANEERKKLKAEAAKVRAQERKIAEEEFRQMLLKE 136

Query: 141 RAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLEEKLLDAIVNTTPL 194
           R EKLE+WRM E+TREEKK + N+L+R+QS MWIDE  LE+K+L+A+V  T L
Sbjct: 137 RGEKLENWRMKERTREEKKKKNNDLLRQQSSMWIDEDVLEKKILEAVVAATSL 189

[Close]
BLAST of CmoCh06G012470 vs. TrEMBL
Match: A0A0D2SZ05_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G1561001 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.5e-52
Identity = 117/173 (67.63%), Postives = 144/173 (83.24%), Query Frame = 1 

Query: 16  SDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEAQARLALLRRDYAKKV 75
           S  L RSFST  KS+HHN+HQ+THKYL+ N+F+GSW+ P DPKEA+ +LALLRRDYAK+V
Sbjct: 9   SKTLTRSFST--KSSHHNHHQKTHKYLDPNSFLGSWKTPNDPKEAEKKLALLRRDYAKQV 68

Query: 76  KQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAKARAEERKVADEEFRQ 135
           K VRK YI E+ELLRLEK RK+EA++EA+RV NEERK+LKAEAAK RA+ER VA+EEFRQ
Sbjct: 69  KNVRKEYIHEMELLRLEKLRKEEARKEAIRVANEERKRLKAEAAKVRAQERMVAEEEFRQ 128

Query: 136 TLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLEEKLLDAIV 189
           TL+KERAEKLE+WRM     E KK E  +L+RR+S MWI+E++LE K+  AIV
Sbjct: 129 TLLKERAEKLENWRMKRTLHENKKKEAKDLVRRRSSMWIEEQELESKIFSAIV 179

[Close]
BLAST of CmoCh06G012470 vs. TrEMBL
Match: W9RY01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021634 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 123/192 (64.06%), Postives = 153/192 (79.69%), Query Frame = 1 

Query: 4   ASRSAIRKATNFSDYLLRSFSTST--KSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEAQ 63
           +SRS  RK T  +   LR FSTS+  K +  NNH + H+YLE N F+GSWEAPKDP+EA+
Sbjct: 3   SSRSLHRKTTEITR-TLRFFSTSSAPKPSPRNNHSENHQYLEVNPFLGSWEAPKDPREAE 62

Query: 64  ARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAKA 123
            RLA LRRDYAK+VK++RK YI+EVEL+RLEK RKDE+++EALR+ NEERKK KAEAAK 
Sbjct: 63  RRLAQLRRDYAKQVKELRKEYIKEVELMRLEKLRKDESRKEALRLQNEERKKQKAEAAKV 122

Query: 124 RAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLEE 183
            A ER+   EE  QTL+KERAEKLE+WRM EK REEKK EKNEL+R QS +WID+  LE+
Sbjct: 123 GAHERQKFQEELHQTLLKERAEKLENWRMKEKRREEKKKEKNELLRGQSSVWIDQPDLEK 182

Query: 184 KLLDAIVNTTPL 194
           ++L+AIV++TPL
Sbjct: 183 RILEAIVDSTPL 193

[Close]
BLAST of CmoCh06G012470 vs. TAIR10
Match: AT5G49210.1 (AT5G49210.1 unknown protein)

HSP 1 Score: 190.7 bits (483), Expect = 8.6e-49
Identity = 115/197 (58.38%), Postives = 146/197 (74.11%), Query Frame = 1 

Query: 1   MAFA---SRSAIRKATNFSDY-LLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKD 60
           MAF    SR   R++ N S    LRSFS    + HH  HQ+TH +LE   ++GSWEAP D
Sbjct: 1   MAFCNKLSRFVRRQSENASMIGSLRSFSAD--ATHHRFHQETHNFLEPEYYIGSWEAPSD 60

Query: 61  PKEAQARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKA 120
           PK+A+ +LA LRRDYAKKV+  RK YI E+E+LR+EKQRKDEA+  A R  NEER+ LKA
Sbjct: 61  PKDAERKLAQLRRDYAKKVRVYRKEYIHEIEMLRVEKQRKDEARLLAERAANEERRLLKA 120

Query: 121 EAAKARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDE 180
           EAAK RAEERK+ADEEFRQTL+KERAEKLE W+MM + REEK  E+ +L+R QS +WI++
Sbjct: 121 EAAKVRAEERKIADEEFRQTLIKERAEKLEMWKMMGQKREEKIKEREKLLREQSSLWIEQ 180

Query: 181 KKLEEKLLDAIVNTTPL 194
           K+LE K+ +A+V+   L
Sbjct: 181 KELERKITEALVDNVVL 195

[Close]
BLAST of CmoCh06G012470 vs. NCBI nr
Match: gi|659075824|ref|XP_008438350.1| (PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 3.3e-74
Identity = 160/193 (82.90%), Postives = 173/193 (89.64%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MAFAS S IR ATN S+ LLRSFSTS KSAH+NNH QTH+YLEAN+F+GSW+APKDPKEA
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKSAHNNNHLQTHEYLEANSFIGSWQAPKDPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           QARLA LRR+YAK+VKQVRKNYIQEVELLRLEK++KDEAKREALRV NEERKKLKAEAAK
Sbjct: 61  QARLARLRREYAKQVKQVRKNYIQEVELLRLEKEQKDEAKREALRVANEERKKLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RAEERK+ADEEFR TLMKERAEKLEHWRMMEK REEK  EK EL+RRQS  WIDE KLE
Sbjct: 121 VRAEERKIADEEFRLTLMKERAEKLEHWRMMEKKREEKXKEKKELLRRQSSTWIDENKLE 180

Query: 181 EKLLDAIVNTTPL 194
           EKLL+AIVNT  L
Sbjct: 181 EKLLEAIVNTVTL 193

[Close]
BLAST of CmoCh06G012470 vs. NCBI nr
Match: gi|449432404|ref|XP_004133989.1| (PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 156/193 (80.83%), Postives = 173/193 (89.64%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MAFAS S IR ATN S+ LLRSFSTS K+A HNNH QT +YLEAN+F+GSW+APK+PKEA
Sbjct: 1   MAFASGSVIRNATNLSNNLLRSFSTSIKTAQHNNHLQTQEYLEANSFIGSWQAPKNPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           QARLA LRR+YAK+VKQVRKNYIQEVELLRLE+++KDEAK+EALRV NEERKKLKAEAAK
Sbjct: 61  QARLARLRREYAKQVKQVRKNYIQEVELLRLEREQKDEAKKEALRVANEERKKLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RAEERKVADEEFR TL+KERAEKLEHWRMMEK REEKK EK EL+RRQS MW+DE KLE
Sbjct: 121 VRAEERKVADEEFRLTLVKERAEKLEHWRMMEKKREEKKKEKKELLRRQSSMWVDENKLE 180

Query: 181 EKLLDAIVNTTPL 194
           EKLL+AIVNT  L
Sbjct: 181 EKLLEAIVNTITL 193

[Close]
BLAST of CmoCh06G012470 vs. NCBI nr
Match: gi|596288323|ref|XP_007225919.1| (hypothetical protein PRUPE_ppa012021mg [Prunus persica])

HSP 1 Score: 243.0 bits (619), Expect = 4.2e-61
Identity = 134/193 (69.43%), Postives = 165/193 (85.49%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MA  SRS  R         LRSFSTSTK +HHN+HQQ H+Y + N+F+G WEAPKDPKEA
Sbjct: 1   MATTSRSLYRTLR------LRSFSTSTKPSHHNSHQQNHQYTDPNSFIGCWEAPKDPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           +A+LA LRRDYAK+VK+VRK YIQEVEL+RLEK RKDEA++EALR+ NEERK+LKAEAAK
Sbjct: 61  EAKLAQLRRDYAKQVKEVRKEYIQEVELMRLEKLRKDEARKEALRLQNEERKRLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RA++R+VA++EFRQTL+KERAEKLE+W+M EK REEKK EKNEL+RRQS +WI+E +LE
Sbjct: 121 VRAQQREVAEQEFRQTLLKERAEKLENWKMKEKMREEKKKEKNELLRRQSSLWINEPELE 180

Query: 181 EKLLDAIVNTTPL 194
           +K+L+AIV+TTPL
Sbjct: 181 KKILEAIVDTTPL 187

[Close]
BLAST of CmoCh06G012470 vs. NCBI nr
Match: gi|645232528|ref|XP_008222907.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Prunus mume])

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-60
Identity = 133/193 (68.91%), Postives = 164/193 (84.97%), Query Frame = 1 

Query: 1   MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEA 60
           MA  SRS  R         LRSFSTSTK +HHN+HQQ H+Y + N+F+G WEAPKDPKEA
Sbjct: 1   MATTSRSLYRTLR------LRSFSTSTKPSHHNSHQQNHQYTDPNSFIGCWEAPKDPKEA 60

Query: 61  QARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAK 120
           +A+LA LRRDYAK+VK+VRK YIQEVEL+RLEK R DEA++EALR+ NEERK+LKAEAAK
Sbjct: 61  EAKLAQLRRDYAKQVKEVRKEYIQEVELMRLEKLRMDEARKEALRLQNEERKRLKAEAAK 120

Query: 121 ARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLE 180
            RA++R+VA++EFRQTL+KERAEKLE+W+M EK REEKK EKNEL+RRQS +WI+E +LE
Sbjct: 121 VRAQQREVAEQEFRQTLLKERAEKLENWKMKEKMREEKKKEKNELLRRQSSLWINEPELE 180

Query: 181 EKLLDAIVNTTPL 194
           +K+L+AIV+TTPL
Sbjct: 181 KKILEAIVDTTPL 187

[Close]
BLAST of CmoCh06G012470 vs. NCBI nr
Match: gi|657962820|ref|XP_008373012.1| (PREDICTED: DNA ligase 1 [Malus domestica])

HSP 1 Score: 229.6 bits (584), Expect = 4.8e-57
Identity = 121/174 (69.54%), Postives = 154/174 (88.51%), Query Frame = 1 

Query: 20  LRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEAQARLALLRRDYAKKVKQVR 79
           LRSFSTSTK  HHN+HQQ H+Y E N+F+G WEAPKDPKEA+A+LA LRR Y K+VK+VR
Sbjct: 14  LRSFSTSTKPTHHNSHQQNHQYTEPNSFIGCWEAPKDPKEAEAKLAQLRRXYXKQVKEVR 73

Query: 80  KNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAKARAEERKVADEEFRQTLMK 139
           K YI+EVE++RLEK RKDEA +EALR+ NEERK+LKAEAAK RA++R+VA++EFRQTL+K
Sbjct: 74  KEYIKEVEVMRLEKLRKDEAXKEALRLQNEERKRLKAEAAKVRAQQREVAEQEFRQTLLK 133

Query: 140 ERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLEEKLLDAIVNTTPL 194
           ERAEKLE+W+M EK +EE K ++ EL+RR+S MWIDE++LE+K+L+AIV+TTPL
Sbjct: 134 ERAEKLENWKMKEKQKEEMKKDEKELLRRKSSMWIDEQELEKKILEAIVDTTPL 187

The following BLAST results are available for this feature:
BLAST of CmoCh06G012470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G012470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X4_CUCSA1.6e-7280.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130330 PE=4 SV=1[more]
M5XYZ5_PRUPE2.9e-6169.43Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012021mg PE=4 SV=1[more]
A0A067KIA2_JATCU2.0e-5466.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10318 PE=4 SV=1[more]
A0A0D2SZ05_GOSRA5.5e-5267.63Uncharacterized protein OS=Gossypium raimondii GN=B456_011G1561001 PE=4 SV=1[more]
W9RY01_9ROSA1.6e-5164.06Uncharacterized protein OS=Morus notabilis GN=L484_021634 PE=4 SV=1[more]
BLAST of CmoCh06G012470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49210.18.6e-4958.38 unknown protein[more]
BLAST of CmoCh06G012470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075824|ref|XP_008438350.1|3.3e-7482.90PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit A [Cucumis m... [more]
gi|449432404|ref|XP_004133989.1|2.4e-7280.83PREDICTED: chromatin assembly factor 1 subunit A [Cucumis sativus][more]
gi|596288323|ref|XP_007225919.1|4.2e-6169.43hypothetical protein PRUPE_ppa012021mg [Prunus persica][more]
gi|645232528|ref|XP_008222907.1|2.1e-6068.91PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Prunus mum... [more]
gi|657962820|ref|XP_008373012.1|4.8e-5769.54PREDICTED: DNA ligase 1 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G012470.1CmoCh06G012470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 72..131
scor
NoneNo IPR availablePANTHERPTHR36402FAMILY NOT NAMEDcoord: 19..193
score: 5.8
NoneNo IPR availablePANTHERPTHR36402:SF1SUBFAMILY NOT NAMEDcoord: 19..193
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G012470Cucsa.256520Cucumber (Gy14) v1cgycmoB0718
CmoCh06G012470CmaCh14G019000Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G012470Cla021413Watermelon (97103) v1cmowmB793
CmoCh06G012470Csa3G130330Cucumber (Chinese Long) v2cmocuB806
CmoCh06G012470MELO3C006306Melon (DHL92) v3.5.1cmomeB755
CmoCh06G012470CSPI03G10770Wild cucumber (PI 183967)cmocpiB814
CmoCh06G012470Lsi05G018490Bottle gourd (USVL1VR-Ls)cmolsiB757
CmoCh06G012470Cp4.1LG08g02750Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G012470Cp4.1LG03g18060Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G012470MELO3C006306.2Melon (DHL92) v3.6.1cmomedB857
CmoCh06G012470CsaV3_3G010880Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G012470Cla97C05G083890Watermelon (97103) v2cmowmbB833
CmoCh06G012470Bhi01G000156Wax gourdcmowgoB1006
CmoCh06G012470CsGy3G010840Cucumber (Gy14) v2cgybcmoB401
CmoCh06G012470Carg06297Silver-seed gourdcarcmoB1288
CmoCh06G012470Carg24768Silver-seed gourdcarcmoB0244
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G012470CmoCh14G019530Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G012470Melon (DHL92) v3.6.1cmomedB854
CmoCh06G012470Silver-seed gourdcarcmoB0322
CmoCh06G012470Silver-seed gourdcarcmoB1058
CmoCh06G012470Silver-seed gourdcarcmoB1451
CmoCh06G012470Cucumber (Chinese Long) v3cmocucB0967
CmoCh06G012470Watermelon (97103) v2cmowmbB837
CmoCh06G012470Watermelon (97103) v2cmowmbB841
CmoCh06G012470Wax gourdcmowgoB0995
CmoCh06G012470Wax gourdcmowgoB1019
CmoCh06G012470Cucurbita moschata (Rifu)cmocmoB308
CmoCh06G012470Cucurbita moschata (Rifu)cmocmoB437
CmoCh06G012470Cucurbita moschata (Rifu)cmocmoB484
CmoCh06G012470Cucumber (Gy14) v1cgycmoB0735
CmoCh06G012470Cucurbita maxima (Rimu)cmacmoB362
CmoCh06G012470Cucurbita maxima (Rimu)cmacmoB622
CmoCh06G012470Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G012470Cucurbita maxima (Rimu)cmacmoB834
CmoCh06G012470Cucurbita maxima (Rimu)cmacmoB910
CmoCh06G012470Wild cucumber (PI 183967)cmocpiB829
CmoCh06G012470Wild cucumber (PI 183967)cmocpiB813
CmoCh06G012470Melon (DHL92) v3.5.1cmomeB752
CmoCh06G012470Watermelon (Charleston Gray)cmowcgB743
CmoCh06G012470Watermelon (Charleston Gray)cmowcgB746
CmoCh06G012470Watermelon (Charleston Gray)cmowcgB750
CmoCh06G012470Watermelon (97103) v1cmowmB802
CmoCh06G012470Watermelon (97103) v1cmowmB791
CmoCh06G012470Cucurbita pepo (Zucchini)cmocpeB765
CmoCh06G012470Cucurbita pepo (Zucchini)cmocpeB777
CmoCh06G012470Bottle gourd (USVL1VR-Ls)cmolsiB733
CmoCh06G012470Cucumber (Gy14) v2cgybcmoB248
CmoCh06G012470Cucumber (Gy14) v2cgybcmoB416