CsaV3_3G007880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G007880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NC domain-containing protein-related
Location	chr3 : 6850739 .. 6853345 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTTGGTGCTTTTATGAGGGGGAAAATGCGGCGTTGGAACTTGGTTTGGGACCGACCAGCCAACCAGACCACACCCTTTCGTTTATTATGCTTGGTTTATTTGTGTATAAAATGATCATAAATATAATGCAGTCGGGTGTTTGGTACGGTGACTGTTGGGTGCTAGTGAGTTGCATTACTGACAGTAAGTGGCCATTGGAAGAAGTAGAGCCAGATAGGCGGAGGGTGCAGATGGGTATCTGGAGTAATCGAGTGGACAAATGCAAGATCAAGCCAGGTGCCCACATTTACAGCTACAGAGCTGCCTATGCTTACTCCCATCACGGTACTTTTCTCCCCCTTTCGAAATTCGATATTCTTCATGTGGAACATAATTTCCAAGCCCTGTAATCCACTTGTTTTAGCGTTTCTGTTAGAATAATATTTTCTAGTGTGAAGTGTCGATTTATTTGCTAAGGTTTCTGTATCGTTATATTTTTCTATTTGTAATGGAAAGTCTTCCATATAAGTTTTTTTTCATCACAATGCTTGATGGATCCCAATCCAATATTAGCTTTCTTATGGCCATGGTTTCATTCCTTCCCTAGGTATCTCAATTTTTGCAAATTTTTTGCTTGTTAATAGCTTCTCCATTTTTTAGTATCATAATCTTGGGCCAATAAGTAAAATGCTCATACTTTAGAGGGACCGAAGATTTTGATTCTAATGCTAATTTTAGAATCCATTTTAAAAATGTCACCGTTTACCGTTATGGTTATGGAGTTTCCTCACTTTATTTTTTTTCTAGGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAAGTATGATATGTGTCTAAACAACTGTGAGGATTTTGCAAAACAAGTCTTCTGATAAATATTGAAGCTTTCTTATGGCCATGGTTTCATTCCTTCCCTAGGTATCTCAATTTTTGCAAATTTTTTGCTTGTTAATAGCTTCTCCATTTTTTAGTATCATAATCTTGGGCCAATAAGTAAAATGCTCATACTTTAGAGGGACCGAAGATTTTGATTCTAATGCTAATTTTAGAATCCATTTTAAAAATGTCACCGTTTACCGTTATGGTTATGGAGTTTCCTCACTTTATTTTTTTTCTAGGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAAGTATGATATGTGTCTAAACAACTGTGAGGATTTTGCAAAACAAGTCTTCTGATAAATATTGAAGCTGGAACGAGTGGTCAAGTTTCCTCTGTTGGTGCAGCTGTTGCTTCATCCTCCTTTGCTGCGGTTTCCAAGTTTTTAATGCCAGGTCTTGGGGCTGTGGCTGTGGCTGTGGCTGCAGGGACGGGAATGTACCATCTGGGTCGGTATTCTTCCGAGATTGGTGTCCGACCTGATGTGATTAAGGTGGAAGTTGAGGTCTTGCTCCCCATCAAAAAGAAGTTTCGAAGAACTCTTGGGTCCAGCAGATGTAATCAAAGATAATGTACAGAAAGGCAGTGAAGGGGGTAAATTGCATGCTTTTCTACCTATGGATTAAAGTTTTGGAGACAAAAATTAGTAATTGGAATAGTGGGAATCAAGGCTGATATTACAATTTCAAAAAGAATTTGAGTATTTTTAAGACAATTGGCCAGAGAAATTGTTCGATAACTTCCAACATATGCATAATATTCATAGCGTGAGGAGAGGAAATGCGAATTCTTAAGTCAACTAATTGAATTAGAAAATCAGATGGGTGACTTTTAATTGGAAAAACAGAATAGTTTTGAAACAAATTAGATTTTAAAAAAAGGTTTGTTTTTAGTAGAGGAGACGAGAGTAATAAAGTTCTCTTTTTTTGTAATCCATTCTTTCCTTTTAGGTTTTTTCTTTTATTTCCAAACATATTTTACTCATTCTCTGCCTTTTTAGTATATTATTTATATTTTTCAACAAAATTTATTTCAATTAAAAAAAGGAATTCTTATAGATAGAAAAAGATTGAAATTATTTTTAAAATATACCAAAAAGACTAAGATATTTTAGGGAAAAATTTATAGATTTTGCTATATTTTGTAAAAAAGAATTCAATATTTTTCTATATTTGAAAATGTTCAAAACACTAATTTTAGAATTAGGATGTGTTTGGAATATATGTAACGTTTATGAAGATATATTATCAAAATAACATCATTTTAGAATTAAAGTCGTGCTCTCCATTGTAATTATAAATATTAATTCACCATATATTAAATTATGTAAAACATAAATTGAATTAATTATTCGAGGAATTGCATCAAAATCAGAAAAGCTAAACGTTTCCTAGAAAAAAAAAGTAAATGATTTTGTTAAAAAAAAAATGTAACTTGATAAATAAAGTATTATCTAAATTAAAGAAAACAAATTGAAAAAAGATAAAAATTATACTAACAACAACCAATTTTTTTTTTAACATTAATTTAAAATTTAGAATTTTGAAATTGAAATAAATTTTGTTAAAAAATATTAA

mRNA sequence

ATGAAAGGTTGGTGCTTTTATGAGGGGGAAAATGCGGCGTTGGAACTTGGTTTGGGACCGACCAGCCAACCAGACCACACCCTTTCGTTTATTATGCTTGGTTTATTTGTGTATAAAATGATCATAAATATAATGCAGTCGGGTGTTTGGTACGGTGACTGTTGGGTGCTAGTGAGTTGCATTACTGACAGTAAGTGGCCATTGGAAGAAGTAGAGCCAGATAGGCGGAGGGTGCAGATGGGTATCTGGAGTAATCGAGTGGACAAATGCAAGATCAAGCCAGGTGCCCACATTTACAGCTACAGAGCTGCCTATGCTTACTCCCATCACGGTACTTTTCTCCCCCTTTCGAAATTCGATATTCTTCATGTGGAACATAATTTCCAAGCCCTGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAAGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAATCTTCTGATAAATATTGAAGCTGGAACGAGTGGTCAAGTTTCCTCTGTTGGTGCAGCTGTTGCTTCATCCTCCTTTGCTGCGGTTTCCAAGTTTTTAATGCCAGGTCTTGGGGCTGTGGCTGTGGCTGTGGCTGCAGGGACGGGAATGTACCATCTGGGTCGGTATTCTTCCGAGATTGGTGTCCGACCTGATGTGATTAAGGTGGAAGTTGAGAATTTTGAAATTGAAATAAATTTTGTTAAAAAATATTAA

Coding sequence (CDS)

ATGAAAGGTTGGTGCTTTTATGAGGGGGAAAATGCGGCGTTGGAACTTGGTTTGGGACCGACCAGCCAACCAGACCACACCCTTTCGTTTATTATGCTTGGTTTATTTGTGTATAAAATGATCATAAATATAATGCAGTCGGGTGTTTGGTACGGTGACTGTTGGGTGCTAGTGAGTTGCATTACTGACAGTAAGTGGCCATTGGAAGAAGTAGAGCCAGATAGGCGGAGGGTGCAGATGGGTATCTGGAGTAATCGAGTGGACAAATGCAAGATCAAGCCAGGTGCCCACATTTACAGCTACAGAGCTGCCTATGCTTACTCCCATCACGGTACTTTTCTCCCCCTTTCGAAATTCGATATTCTTCATGTGGAACATAATTTCCAAGCCCTGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAAGGTGAGAGCTGGCACTTGCACCATTGCAAAATCTGACTCATCTAATATGGTTCTGCACCGAGCAATGTATCTTCTTCTAAATGGATTTGGAAATCTTCTGATAAATATTGAAGCTGGAACGAGTGGTCAAGTTTCCTCTGTTGGTGCAGCTGTTGCTTCATCCTCCTTTGCTGCGGTTTCCAAGTTTTTAATGCCAGGTCTTGGGGCTGTGGCTGTGGCTGTGGCTGCAGGGACGGGAATGTACCATCTGGGTCGGTATTCTTCCGAGATTGGTGTCCGACCTGATGTGATTAAGGTGGAAGTTGAGAATTTTGAAATTGAAATAAATTTTGTTAAAAAATATTAA

Protein sequence

MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSCITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHNFQALVRAGTCTIAKSDSSNMVLHRAMYLLLNGFGKVRAGTCTIAKSDSSNMVLHRAMYLLLNGFGNLLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEVENFEIEINFVKKY

Homology

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BLAST of CsaV3_3G007880 vs. NCBI nr
Match: KGN56405.1 (hypothetical protein Csa_3G119390 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 238/264 (90.15%), Postives = 239/264 (90.53%), Query Frame = 0


Query: 1   MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 60
           MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC
Sbjct: 18  MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 77

Query: 61  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFD 120
           ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHH    P     
Sbjct: 78  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHAFLWPWF--- 137

Query: 121 ILHVEHNFQALVRAGTCTIAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXX 180
                H+F   VRAGTCTIAKSDSSNMVLHRA        XXXXXXXXXXXXXXXXXXXX
Sbjct: 138 -----HSFPR-VRAGTCTIAKSDSSNMVLHRAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 197

Query: 181 XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT 240
           XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT
Sbjct: 198 XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT 257

Query: 241 GMYHLGRYSSEIGVRPDVIKVEVE 265
           GMYHLGRYSSEIGVRPDVIKVEVE
Sbjct: 258 GMYHLGRYSSEIGVRPDVIKVEVE 272

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BLAST of CsaV3_3G007880 vs. NCBI nr
Match: XP_011652745.1 (PREDICTED: uncharacterized protein LOC105435078 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 141/170 (82.94%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 60
           MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC
Sbjct: 18  MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 77

Query: 61  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFD 120
           ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHH   +      
Sbjct: 78  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHVFHISFFSSQ 137

Query: 121 ILHVEHNFQAL----------VRAGTCTIAKSDSSNMVLHRAMYLLLNGF 161
            L   +   A           VRAGTCTIAKSDSSNMVLHRAMYLLLNGF
Sbjct: 138 CLMDPNPILAFLWPWFHSFPRVRAGTCTIAKSDSSNMVLHRAMYLLLNGF 187

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BLAST of CsaV3_3G007880 vs. NCBI nr
Match: XP_022147273.1 (uncharacterized protein LOC111016269 isoform X1 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 91/269 (33.83%), Postives = 106/269 (39.41%), Query Frame = 0


Query: 69  EEVEP----DRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFL---------- 128
           EEV+P     RRR QMG  SNRV K KIKPG HIY+YRAA+ Y+HHG +           
Sbjct: 14  EEVDPYCRGSRRREQMGFVSNRVGKSKIKPGDHIYTYRAAFTYAHHGIYAGGYQVIHFTP 73

Query: 129 -------------------------------------------------------PLSKF 188
                                                                   L  F
Sbjct: 74  EVNLNSRTATSSGFCCSSSSIQPSCPNTLCIPHCGIRQPCSGVVLSCLDCFLGNGSLYFF 133

Query: 189 DILHVEHNFQALVRAGTCTIAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXX 248
           D       F + VR GTCT AKSD SN VLHRAMYLLLNGF                   
Sbjct: 134 DYGVSSMVFLSRVRGGTCTTAKSDRSNKVLHRAMYLLLNGFGKYDLFQNNCEDFCLYCKT 193

Query: 249 XXXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAG 269
                            N   G SGQ SS     A++  ++  K LM     +AV  A  
Sbjct: 194 GLLISD-----------NRGLGRSGQASSFIGVPAAAILSSPLKLLMSSSVGLAVTAA-- 253

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BLAST of CsaV3_3G007880 vs. NCBI nr
Match: XP_024024142.1 (uncharacterized protein LOC21406235 isoform X1 [Morus notabilis])

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 80/249 (32.13%), Postives = 103/249 (41.37%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +NRV++ +IKPG HIY+YRA +AYSHHG F+  SK      E N            
Sbjct: 40  MGLLTNRVERSEIKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPERNLNSGEASTDSYD 99

Query: 140 --------------------------------------------FQALVRAGTCTIAKSD 199
                                                       F A VR GTCT A SD
Sbjct: 100 SMSCPTFPDCGFRQPNSGVVLSCLDCFLRNGSVYCFEYGVTPSVFLAKVRGGTCTTAASD 159

Query: 200 SSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAGTS 259
            S  V+HRAMYLL NGF                                  L  +  G S
Sbjct: 160 PSETVIHRAMYLLQNGF-----------GNYDVFQNNCEDFALYCKTGLLILDRLGVGRS 219

Query: 260 GQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEV 273
           GQ SSV  A  ++  ++  K LMP    VA   A   GMY + RY+++IGVR DV+KV V
Sbjct: 220 GQASSVIGAPLAAILSSPLKLLMPSPVGVATVTA---GMYCMSRYATDIGVRTDVMKVAV 274

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BLAST of CsaV3_3G007880 vs. NCBI nr
Match: XP_010100705.1 (uncharacterized protein LOC21406235 isoform X2 [Morus notabilis] >EXB83867.1 hypothetical protein L484_023474 [Morus notabilis])

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 80/249 (32.13%), Postives = 103/249 (41.37%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +NRV++ +IKPG HIY+YRA +AYSHHG F+  SK      E N            
Sbjct: 1   MGLLTNRVERSEIKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPERNLNSGEASTDSYD 60

Query: 140 --------------------------------------------FQALVRAGTCTIAKSD 199
                                                       F A VR GTCT A SD
Sbjct: 61  SMSCPTFPDCGFRQPNSGVVLSCLDCFLRNGSVYCFEYGVTPSVFLAKVRGGTCTTAASD 120

Query: 200 SSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAGTS 259
            S  V+HRAMYLL NGF                                  L  +  G S
Sbjct: 121 PSETVIHRAMYLLQNGF-----------GNYDVFQNNCEDFALYCKTGLLILDRLGVGRS 180

Query: 260 GQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEV 273
           GQ SSV  A  ++  ++  K LMP    VA   A   GMY + RY+++IGVR DV+KV V
Sbjct: 181 GQASSVIGAPLAAILSSPLKLLMPSPVGVATVTA---GMYCMSRYATDIGVRTDVMKVAV 235

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BLAST of CsaV3_3G007880 vs. TAIR10
Match: AT1G01225.1 (NC domain-containing protein-related)

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-21
Identity = 74/250 (29.60%), Postives = 106/250 (42.40%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +N++++ ++KPG HIY+YRA +AYSHHG F+  SK      EHN            
Sbjct: 1   MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPMDSSTSSISSS 60

Query: 140 ----------------------------------------------FQALVRAGTCTIAK 199
                                                         F   VR GTCT A+
Sbjct: 61  SSEDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTTAQ 120

Query: 200 SDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAG 259
           SD+++ V+HRAMYLL NGF                                  +  +  G
Sbjct: 121 SDTTDSVIHRAMYLLQNGF-----------GNYDIFKNNCEDFALYCKTGLLIMDKLGVG 180

Query: 260 TSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKV 272
            SGQ SS+  A  ++  ++  K L+P    VA   A   GMY + RY+++IGVR DVIKV
Sbjct: 181 RSGQASSIVGAPLAALLSSPFKLLIPSPIGVATVTA---GMYCMSRYATDIGVRSDVIKV 236

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BLAST of CsaV3_3G007880 vs. TAIR10
Match: AT4G00905.1 (NC domain-containing protein-related)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 71/259 (27.41%), Postives = 97/259 (37.45%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +N+V++ ++KPG HIY+YRA +AYSHHG F+   K      EH+            
Sbjct: 1   MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASXXXX 60

Query: 140 --------------------------------------------------------FQAL 199
                                                                   F   
Sbjct: 61  XXXXXXXXXXSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120

Query: 200 VRAGTCTIAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 259
            R GTCT A SD    V+HRAM+LL NGF                               
Sbjct: 121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGF-----------GNYNVFQNNCEDFALYCKTG 180

Query: 260 XXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSE 271
              L     G SGQ SS+  A  ++  ++    L+P    VA   A   GMY + RY+++
Sbjct: 181 LLILDKNGVGRSGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTA---GMYCMSRYATD 240

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BLAST of CsaV3_3G007880 vs. TAIR10
Match: AT5G06370.1 (NC domain-containing protein-related)

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-13
Identity = 64/251 (25.50%), Postives = 94/251 (37.45%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFL------------------------- 139
           MG+ SNR+D+  +KPG HIYS+R AY Y+HHG ++                         
Sbjct: 1   MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60

Query: 140 ------------------------------------PLSKFDILHVEHNFQALVRAGTCT 199
                                                L +F+      +F    R GTCT
Sbjct: 61  VSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTCT 120

Query: 200 IAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINI 259
           +A +D + +V+HRA +LL NGF                                  L+ +
Sbjct: 121 LAVADPNEIVVHRAKHLLQNGF--------------GCYDVFKNNCEDFAIYCKTALLVL 180

Query: 260 EAGTSGQ----VSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGV 266
           E  T GQ    VS +G  +A+     +        G  A A+    G+Y   RY+++IG+
Sbjct: 181 EGRTMGQSGQAVSIIGGPIAAVLSTPMRLLTTNVYGMAATAI----GVYCASRYATDIGM 233

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BLAST of CsaV3_3G007880 vs. TAIR10
Match: AT3G02700.1 (NC domain-containing protein-related)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 70/253 (27.67%), Postives = 97/253 (38.34%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFD------------------- 139
           MG  SN++ +  +KPG HIYS+R AY Y+HHG ++   + +                   
Sbjct: 1   MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60

Query: 140 ILHVEHN-------------------------------------------FQALVRAGTC 199
           I+   HN                                           F A  R G C
Sbjct: 61  IVSSSHNHGDNPCPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGVC 120

Query: 200 TIAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIN 259
           TIA SD    V++RA +LL NGF                                  + N
Sbjct: 121 TIASSDPPEEVIYRANFLLQNGF------------GVYNVFKNNCEDFAIYCKTGLLVAN 180

Query: 260 IEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPD 271
            + G SGQ +S+ AA AS   ++  +F + G G +AV   AG GMY   R  S+IG+R D
Sbjct: 181 TDVGRSGQAASIVAA-ASVLLSSPLRF-VAGFGGLAV---AGYGMYCTSRLVSDIGMRWD 236

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BLAST of CsaV3_3G007880 vs. TAIR10
Match: AT5G16360.1 (NC domain-containing protein-related)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09
Identity = 69/277 (24.91%), Postives = 98/277 (35.38%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSK--------------------- 139
           MG++S+++ +  +KPG HIYS+R AY YSHHG ++   K                     
Sbjct: 1   MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query: 140 FDILHVEH--------------NFQALV----------------------------RAGT 199
            DI    H              N   ++                            R GT
Sbjct: 61  IDISIPNHGRRDKKCIDCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAKRGGT 120

Query: 200 CTIAKSDSSNMVLHRAMYLLL-NGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 259
           CTIA SD  + V+ RA +LLL NGF                                   
Sbjct: 121 CTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVLS---------- 180

Query: 260 INIEAGTSGQVSSVGAA----------------------------VASSSFAAVSKFLMP 265
           +  + G SGQ +SV AA                            V +   ++  K+++P
Sbjct: 181 VATKFGCSGQANSVSAAGGVVALTLKVLGVKKKSSSGHEDDSVVSVVNQFISSTVKYVVP 240

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BLAST of CsaV3_3G007880 vs. TrEMBL
Match: tr|A0A0A0L329|A0A0A0L329_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119390 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 9.6e-104
Identity = 238/264 (90.15%), Postives = 239/264 (90.53%), Query Frame = 0


Query: 1   MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 60
           MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC
Sbjct: 18  MKGWCFYEGENAALELGLGPTSQPDHTLSFIMLGLFVYKMIINIMQSGVWYGDCWVLVSC 77

Query: 61  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFD 120
           ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHH    P     
Sbjct: 78  ITDSKWPLEEVEPDRRRVQMGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHAFLWPWF--- 137

Query: 121 ILHVEHNFQALVRAGTCTIAKSDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXX 180
                H+F   VRAGTCTIAKSDSSNMVLHRA        XXXXXXXXXXXXXXXXXXXX
Sbjct: 138 -----HSFPR-VRAGTCTIAKSDSSNMVLHRAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 197

Query: 181 XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT 240
           XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT
Sbjct: 198 XXXXXXXXXXXXXXLINIEAGTSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGT 257

Query: 241 GMYHLGRYSSEIGVRPDVIKVEVE 265
           GMYHLGRYSSEIGVRPDVIKVEVE
Sbjct: 258 GMYHLGRYSSEIGVRPDVIKVEVE 272

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BLAST of CsaV3_3G007880 vs. TrEMBL
Match: tr|W9RLI4|W9RLI4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023474 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 80/249 (32.13%), Postives = 103/249 (41.37%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +NRV++ +IKPG HIY+YRA +AYSHHG F+  SK      E N            
Sbjct: 1   MGLLTNRVERSEIKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPERNLNSGEASTDSYD 60

Query: 140 --------------------------------------------FQALVRAGTCTIAKSD 199
                                                       F A VR GTCT A SD
Sbjct: 61  SMSCPTFPDCGFRQPNSGVVLSCLDCFLRNGSVYCFEYGVTPSVFLAKVRGGTCTTAASD 120

Query: 200 SSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAGTS 259
            S  V+HRAMYLL NGF                                  L  +  G S
Sbjct: 121 PSETVIHRAMYLLQNGF-----------GNYDVFQNNCEDFALYCKTGLLILDRLGVGRS 180

Query: 260 GQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEV 273
           GQ SSV  A  ++  ++  K LMP    VA   A   GMY + RY+++IGVR DV+KV V
Sbjct: 181 GQASSVIGAPLAAILSSPLKLLMPSPVGVATVTA---GMYCMSRYATDIGVRTDVMKVAV 235

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BLAST of CsaV3_3G007880 vs. TrEMBL
Match: tr|Q8LBP8|Q8LBP8_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.7e-18
Identity = 75/250 (30.00%), Postives = 107/250 (42.80%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKFDILHVEHN------------ 139
           MG+ +N++++ ++KPG HIY+YRA +AYSHHG F+  SK      EHN            
Sbjct: 1   MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPMDSSTSSISSS 60

Query: 140 ----------------------------------------------FQALVRAGTCTIAK 199
                                                         F   VR GTCT A+
Sbjct: 61  SSEDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTTAQ 120

Query: 200 SDSSNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAG 259
           SD+++ V+HRAMYLL NGF                                  +  +  G
Sbjct: 121 SDTTDSVIHRAMYLLQNGF-----------GNYDIFKNNCEDFALYCKTGLLIMDKLGVG 180

Query: 260 TSGQVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKV 272
            SGQ SS+  A  ++  ++ SK L+P    VA   A   GMY + RY+++IGVR DVIKV
Sbjct: 181 RSGQASSIVGAPLAALLSSPSKLLIPSPIGVATVTA---GMYCMSRYATDIGVRSDVIKV 236

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BLAST of CsaV3_3G007880 vs. TrEMBL
Match: tr|A0A0V0HJR7|A0A0V0HJR7_SOLCH (Putative NC domain-containing protein-related-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 79/248 (31.85%), Postives = 105/248 (42.34%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKF-------------------- 139
           MG+ +NRVD+ +IKPG HIY+YRA +AYSHHG F+  SK                     
Sbjct: 1   MGLLTNRVDRSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFTRVEGSSDAANEISGLS 60

Query: 140 ------------------------------DILHVEHN-----FQALVRAGTCTIAKSDS 199
                                          +   E+      F + VR GTCT A SD 
Sbjct: 61  SSCPIFPDCGFRLPNSGVVLSCLNCFLHTGSLYSFEYGVSPSVFLSKVRGGTCTTAVSDP 120

Query: 200 SNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAGTSG 259
             MV+HRAM+LL NGF                                  L  +  G SG
Sbjct: 121 PEMVIHRAMHLLQNGF-----------GNYDVFQNNCEDFALYCKTGLLTLDKLGVGRSG 180

Query: 260 QVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEVE 273
           Q SSV  A  ++  ++  KFL+P    VA   A   GMY + RY+++IGVR DVIKV VE
Sbjct: 181 QASSVVGAPLAALLSSPLKFLIPSPVGVATVTA---GMYCMSRYATDIGVRSDVIKVAVE 234

[Close]

BLAST of CsaV3_3G007880 vs. TrEMBL
Match: tr|M0ZH46|M0ZH46_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102589709 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 79/248 (31.85%), Postives = 105/248 (42.34%), Query Frame = 0


Query: 80  MGIWSNRVDKCKIKPGAHIYSYRAAYAYSHHGTFLPLSKF-------------------- 139
           MG+ +NRVD+ +IKPG HIY+YRA +AYSHHG F+  SK                     
Sbjct: 1   MGLLTNRVDRSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFTRVEGSSDAANEISGLS 60

Query: 140 ------------------------------DILHVEHN-----FQALVRAGTCTIAKSDS 199
                                          +   E+      F + VR GTCT A SD 
Sbjct: 61  SSCPIFPDCGFRLPNSGVVLSCLNCFLRTGSLYSFEYGVSPSVFLSKVRGGTCTTAVSDP 120

Query: 200 SNMVLHRAMYLLLNGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLINIEAGTSG 259
             MV+HRAM+LL NGF                                  L  +  G SG
Sbjct: 121 PEMVIHRAMHLLQNGF-----------GNYDVFQNNCEDFALYCKTGLLTLDRLGVGRSG 180

Query: 260 QVSSVGAAVASSSFAAVSKFLMPGLGAVAVAVAAGTGMYHLGRYSSEIGVRPDVIKVEVE 273
           Q SSV  A  ++  ++  KFL+P    VA   A   GMY + RY+++IGVR DVIKV VE
Sbjct: 181 QASSVVGAPLAALLSSPLKFLIPSPVGVATVTA---GMYCMSRYATDIGVRSDVIKVAVE 234

The following BLAST results are available for this feature:

BLAST of CsaV3_3G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56405.1	1.4e-103	90.15	hypothetical protein Csa_3G119390 [Cucumis sativus]	[more]
XP_011652745.1	1.1e-74	82.94	PREDICTED: uncharacterized protein LOC105435078 [Cucumis sativus]	[more]
XP_022147273.1	1.3e-19	33.83	uncharacterized protein LOC111016269 isoform X1 [Momordica charantia]	[more]
XP_024024142.1	3.2e-18	32.13	uncharacterized protein LOC21406235 isoform X1 [Morus notabilis]	[more]
XP_010100705.1	3.2e-18	32.13	uncharacterized protein LOC21406235 isoform X2 [Morus notabilis] >EXB83867.1 hyp...	[more]

BLAST of CsaV3_3G007880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01225.1	6.4e-21	29.60	NC domain-containing protein-related	[more]
AT4G00905.1	1.8e-15	27.41	NC domain-containing protein-related	[more]
AT5G06370.1	8.4e-13	25.50	NC domain-containing protein-related	[more]
AT3G02700.1	1.1e-12	27.67	NC domain-containing protein-related	[more]
AT5G16360.1	4.3e-09	24.91	NC domain-containing protein-related	[more]

BLAST of CsaV3_3G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L329\|A0A0A0L329_CUCSA	9.6e-104	90.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119390 PE=4 SV=1	[more]
tr\|W9RLI4\|W9RLI4_9ROSA	2.1e-18	32.13	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023474 PE=4 SV=1	[more]
tr\|Q8LBP8\|Q8LBP8_ARATH	4.7e-18	30.00	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 PE=2 SV=1	[more]
tr\|A0A0V0HJR7\|A0A0V0HJR7_SOLCH	6.2e-18	31.85	Putative NC domain-containing protein-related-like OS=Solanum chacoense OX=4108 ...	[more]
tr\|M0ZH46\|M0ZH46_SOLTU	6.2e-18	31.85	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102589709 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G007880.1	CsaV3_3G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13943:SF32	SUBFAMILY NOT NAMED	coord: 199..273
None	No IPR available	PANTHER	PTHR13943:SF32	SUBFAMILY NOT NAMED	coord: 161..194
None	No IPR available	PANTHER	PTHR13943	HRAS-LIKE SUPPRESSOR - RELATED	coord: 126..161
None	No IPR available	PANTHER	PTHR13943	HRAS-LIKE SUPPRESSOR - RELATED	coord: 199..273
None	No IPR available	PANTHER	PTHR13943:SF32	SUBFAMILY NOT NAMED	coord: 126..161 coord: 80..120
None	No IPR available	PANTHER	PTHR13943	HRAS-LIKE SUPPRESSOR - RELATED	coord: 80..120 coord: 161..194

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G007880	CSPI03G07760	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G007880	Cucsa.259400	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G007880	CmaCh14G021210	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G007880	CmaCh06G009770	Cucurbita maxima (Rimu)	cmacucB0980
CsaV3_3G007880	CmoCh14G021840	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G007880	CmoCh06G010270	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G007880	Cp4.1LG03g15840	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G007880	Cp4.1LG08g00800	Cucurbita pepo (Zucchini)	cpecucB1058
CsaV3_3G007880	CsGy3G007880	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G007880	Carg25707	Silver-seed gourd	carcucB0141
CsaV3_3G007880	Carg20907	Silver-seed gourd	carcucB1037
CsaV3_3G007880	Cla021138	Watermelon (97103) v1	cucwmB239
CsaV3_3G007880	MELO3C006006	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G007880	ClCG05G000670	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G007880	Lsi05G021430	Bottle gourd (USVL1VR-Ls)	cuclsiB228
CsaV3_3G007880	Bhi01G000374	Wax gourd	cucwgoB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G007880	Wax gourd	cucwgoB264
CsaV3_3G007880	Cucumber (Chinese Long) v3	cuccucB119
CsaV3_3G007880	Cucumber (Gy14) v2	cgybcucB211
CsaV3_3G007880	Cucumber (Gy14) v1	cgycucB325
CsaV3_3G007880	Cucurbita maxima (Rimu)	cmacucB0721
CsaV3_3G007880	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G007880	Cucurbita moschata (Rifu)	cmocucB0374
CsaV3_3G007880	Cucurbita moschata (Rifu)	cmocucB0707
CsaV3_3G007880	Cucurbita moschata (Rifu)	cmocucB1043
CsaV3_3G007880	Wild cucumber (PI 183967)	cpicucB263
CsaV3_3G007880	Bottle gourd (USVL1VR-Ls)	cuclsiB164
CsaV3_3G007880	Melon (DHL92) v3.5.1	cucmeB168
CsaV3_3G007880	Melon (DHL92) v3.6.1	cucmedB158
CsaV3_3G007880	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G007880	Watermelon (Charleston Gray)	cucwcgB207
CsaV3_3G007880	Watermelon (97103) v1	cucwmB267
CsaV3_3G007880	Watermelon (97103) v2	cucwmbB174
CsaV3_3G007880	Watermelon (97103) v2	cucwmbB206