CsaV3_3G005460 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G005460
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRibosomal RNA small subunit methyltransferase E
Locationchr3 : 4586022 .. 4586220 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTATAACCGAGAAATCTAGGGCTGTGACGAAGAATCCATCGCCATGTGATGTTGAAGCTCTCAAGAAATGTTTGCAGGAAAATAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCATGTTTTCTTGTTCCCTAAAGAAATCAAATCCATCTTTGCAATCCGGGAGAAATGACTTCGACACCG

mRNA sequence

ATGGATGGTATAACCGAGAAATCTAGGGCTGTGACGAAGAATCCATCGCCATGTGATGTTGAAGCTCTCAAGAAATGTTTGCAGGAAAATAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCATGTTTTCTTGTTCCCTAAAGAAATCAAATCCATCTTTGCAATCCGGGAGAAATGACTTCGACACCG

Coding sequence (CDS)

ATGGATGGTATAACCGAGAAATCTAGGGCTGTGACGAAGAATCCATCGCCATGTGATGTTGAAGCTCTCAAGAAATGTTTGCAGGAAAATAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCATGTTTTCTTGTTCCCTAAAGAAATCAAATCCATCTTTGCAATCCGGGAGAAATGACTTCGACACCG

Protein sequence

MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSGRNDFDTX
BLAST of CsaV3_3G005460 vs. NCBI nr
Match: KGN56160.1 (hypothetical protein Csa_3G081365 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 9.7e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60
          MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDT 67
          RNDFDT
Sbjct: 61 RNDFDT 66

BLAST of CsaV3_3G005460 vs. NCBI nr
Match: ESR35195.1 (hypothetical protein CICLE_v10006392mg [Citrus clementina])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 5  TEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          T +S    K  SPCDVEALKKCL+EN GD VKC+SQI+AF  SCSLKK++ SL+S
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKASSSLES 58

BLAST of CsaV3_3G005460 vs. NCBI nr
Match: KOM51282.1 (hypothetical protein LR48_Vigan08g210900 [Vigna angularis] >BAT91334.1 hypothetical protein VIGAN_06265400 [Vigna angularis var. angularis])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          MD     S  V K  S CDVEALKKCL+EN GD VKC++QI+AF  SCSLKK NPSL S
Sbjct: 37 MDQKAGDSSTVKKINSACDVEALKKCLEENKGDYVKCQTQIEAFKSSCSLKKPNPSLDS 95

BLAST of CsaV3_3G005460 vs. NCBI nr
Match: PPD82997.1 (hypothetical protein GOBAR_DD20100 [Gossypium barbadense])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 13 KNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          K PSPCDVEALKKCLQEN GD VKC+SQI+AF  SCSLKK  PS  S
Sbjct: 12 KIPSPCDVEALKKCLQENKGDYVKCQSQIEAFKSSCSLKKPTPSAGS 58

BLAST of CsaV3_3G005460 vs. NCBI nr
Match: POF26711.1 (hypothetical protein CFP56_60860 [Quercus suber])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 7  KSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          +S  V K  SPCDVEALKKCL EN GD VKC+SQI+AF  SCS+KK NPS +S
Sbjct: 6  ESYTVKKIMSPCDVEALKKCLDENKGDYVKCQSQIEAFKSSCSIKKPNPSQES 58

BLAST of CsaV3_3G005460 vs. TrEMBL
Match: tr|A0A0A0L2G8|A0A0A0L2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60
          MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDT 67
          RNDFDT
Sbjct: 61 RNDFDT 66

BLAST of CsaV3_3G005460 vs. TrEMBL
Match: tr|V4S8P1|V4S8P1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006392mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 5  TEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          T +S    K  SPCDVEALKKCL+EN GD VKC+SQI+AF  SCSLKK++ SL+S
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKASSSLES 58

BLAST of CsaV3_3G005460 vs. TrEMBL
Match: tr|A0A0L9V8P8|A0A0L9V8P8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g210900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          MD     S  V K  S CDVEALKKCL+EN GD VKC++QI+AF  SCSLKK NPSL S
Sbjct: 37 MDQKAGDSSTVKKINSACDVEALKKCLEENKGDYVKCQTQIEAFKSSCSLKKPNPSLDS 95

BLAST of CsaV3_3G005460 vs. TrEMBL
Match: tr|A0A0S3SEQ9|A0A0S3SEQ9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G265400 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          MD     S  V K  S CDVEALKKCL+EN GD VKC++QI+AF  SCSLKK NPSL S
Sbjct: 37 MDQKAGDSSTVKKINSACDVEALKKCLEENKGDYVKCQTQIEAFKSSCSLKKPNPSLDS 95

BLAST of CsaV3_3G005460 vs. TrEMBL
Match: tr|A0A2P5R8D9|A0A2P5R8D9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 13 KNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQS 60
          K PSPCDVEALKKCLQEN GD VKC+SQI+AF  SCSLKK  PS  S
Sbjct: 12 KIPSPCDVEALKKCLQENKGDYVKCQSQIEAFKSSCSLKKPTPSAGS 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56160.19.7e-30100.00hypothetical protein Csa_3G081365 [Cucumis sativus][more]
ESR35195.11.0e-1065.45hypothetical protein CICLE_v10006392mg [Citrus clementina][more]
KOM51282.11.0e-1064.41hypothetical protein LR48_Vigan08g210900 [Vigna angularis] >BAT91334.1 hypotheti... [more]
PPD82997.11.0e-1076.60hypothetical protein GOBAR_DD20100 [Gossypium barbadense][more]
POF26711.11.3e-1067.92hypothetical protein CFP56_60860 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L2G8|A0A0A0L2G8_CUCSA6.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1[more]
tr|V4S8P1|V4S8P1_9ROSI6.7e-1165.45Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006392mg PE=4 ... [more]
tr|A0A0L9V8P8|A0A0L9V8P8_PHAAN6.7e-1164.41Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g210900 PE... [more]
tr|A0A0S3SEQ9|A0A0S3SEQ9_PHAAN6.7e-1164.41Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G... [more]
tr|A0A2P5R8D9|A0A2P5R8D9_GOSBA6.7e-1176.60Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20100 PE=4 SV... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0006810 transport
biological_process GO:0032259 methylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
molecular_function GO:0008168 methyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G005460.1CsaV3_3G005460.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36856FAMILY NOT NAMEDcoord: 6..63
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILYSSF47072Cysteine alpha-hairpin motifcoord: 14..45