CmoCh04G010050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G010050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibosomal RNA small subunit methyltransferase E
LocationCmo_Chr04 : 5067527 .. 5067733 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA

mRNA sequence

ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA

Coding sequence (CDS)

ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA
Homology
[Close]
BLAST of CmoCh04G010050 vs. TrEMBL
Match: A0A0A0L2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-21
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQSV 60
          MDG T+KSRA   N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQS 
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDGLETGV 69
          R+  +TGV
Sbjct: 61 RNDFDTGV 68

[Close]
BLAST of CmoCh04G010050 vs. TrEMBL
Match: B9RIW7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583260 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          MD K + S A  + LSPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP PS+ +
Sbjct: 1  MDEKGESSSAKKV-LSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPTPSMDT 58

[Close]
BLAST of CmoCh04G010050 vs. TrEMBL
Match: A0A067EDM2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035370mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 

Query: 4  KTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +T +S  A   +SPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP+ SL+S
Sbjct: 3  ETAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES 58

[Close]
BLAST of CmoCh04G010050 vs. TrEMBL
Match: A0A0D2TDZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276000 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.7e-12
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 15 LSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          LSPCDVEAL+KCLQEN GD +KC+SQI+AFK SCSLKKP PS  S
Sbjct: 14 LSPCDVEALKKCLQENKGDYVKCQSQIEAFKSSCSLKKPTPSAGS 58

[Close]
BLAST of CmoCh04G010050 vs. TrEMBL
Match: A0A0L9V8P8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g210900 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.7e-12
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          MD K   S       S CDVEAL+KCL+EN GD +KC++QI+AFK SCSLKKPNPSL S
Sbjct: 37 MDQKAGDSSTVKKINSACDVEALKKCLEENKGDYVKCQTQIEAFKSSCSLKKPNPSLDS 95

[Close]
BLAST of CmoCh04G010050 vs. NCBI nr
Match: gi|700201027|gb|KGN56160.1| (hypothetical protein Csa_3G081365 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQSV 60
          MDG T+KSRA   N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQS 
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDGLETGV 69
          R+  +TGV
Sbjct: 61 RNDFDTGV 68

[Close]
BLAST of CmoCh04G010050 vs. NCBI nr
Match: gi|223547594|gb|EEF49089.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          MD K + S A  + LSPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP PS+ +
Sbjct: 1  MDEKGESSSAKKV-LSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPTPSMDT 58

[Close]
BLAST of CmoCh04G010050 vs. NCBI nr
Match: gi|641832977|gb|KDO52000.1| (hypothetical protein CISIN_1g035370mg [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 

Query: 4  KTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +T +S  A   +SPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP+ SL+S
Sbjct: 3  ETAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES 58

[Close]
BLAST of CmoCh04G010050 vs. NCBI nr
Match: gi|920709285|gb|KOM51282.1| (hypothetical protein LR48_Vigan08g210900 [Vigna angularis])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-12
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          MD K   S       S CDVEAL+KCL+EN GD +KC++QI+AFK SCSLKKPNPSL S
Sbjct: 37 MDQKAGDSSTVKKINSACDVEALKKCLEENKGDYVKCQTQIEAFKSSCSLKKPNPSLDS 95

[Close]
BLAST of CmoCh04G010050 vs. NCBI nr
Match: gi|763785700|gb|KJB52771.1| (hypothetical protein B456_008G276000 [Gossypium raimondii])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-12
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 15 LSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          LSPCDVEAL+KCLQEN GD +KC+SQI+AFK SCSLKKP PS  S
Sbjct: 14 LSPCDVEALKKCLQENKGDYVKCQSQIEAFKSSCSLKKPTPSAGS 58

The following BLAST results are available for this feature:
BLAST of CmoCh04G010050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G010050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2G8_CUCSA2.3e-2176.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081365 PE=4 SV=1[more]
B9RIW7_RICCO1.1e-1264.41Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583260 PE=4 SV=1[more]
A0A067EDM2_CITSI1.5e-1264.29Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035370mg PE=4 SV=1[more]
A0A0D2TDZ1_GOSRA5.7e-1277.78Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276000 PE=4 SV=1[more]
A0A0L9V8P8_PHAAN5.7e-1262.71Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g210900 PE=4 SV=1[more]
BLAST of CmoCh04G010050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G010050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201027|gb|KGN56160.1|3.3e-2176.47hypothetical protein Csa_3G081365 [Cucumis sativus][more]
gi|223547594|gb|EEF49089.1|1.6e-1264.41conserved hypothetical protein [Ricinus communis][more]
gi|641832977|gb|KDO52000.1|2.1e-1264.29hypothetical protein CISIN_1g035370mg [Citrus sinensis][more]
gi|920709285|gb|KOM51282.1|8.2e-1262.71hypothetical protein LR48_Vigan08g210900 [Vigna angularis][more]
gi|763785700|gb|KJB52771.1|8.2e-1277.78hypothetical protein B456_008G276000 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006810 transport
biological_process GO:0010089 xylem development
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0045489 pectin biosynthetic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0010417 glucuronoxylan biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016740 transferase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G010050.1CmoCh04G010050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009069Cysteine alpha-hairpin motif superfamilyGENE3DG3DSA:1.10.810.10coord: 17..48
score: 3.
IPR009069Cysteine alpha-hairpin motif superfamilyunknownSSF47072Cysteine alpha-hairpin motifcoord: 16..45
score: 3.1
NoneNo IPR availablePANTHERPTHR36856FAMILY NOT NAMEDcoord: 7..68
score: 4.2