Cla005269 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005269
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 6428150 .. 6428356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

mRNA sequence

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

Coding sequence (CDS)

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

Protein sequence

MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDFDTSV

Homology

[Close]

BLAST of Cla005269 vs. TrEMBL
Match: A0A0A0L2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1  MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSR VTKN SPCDVEALKKCLQ+NNGDRVKCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDTSV 69
          RNDFDT V
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Cla005269 vs. TrEMBL
Match: A0A067JEH6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26092 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-14
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRN 63
          +S  V K +SPCDVEALKKCL+DN GD VKC+ QI+AFKSSCSLKKP  SLQS  N
Sbjct: 36 ESNGVKKVMSPCDVEALKKCLEDNKGDHVKCQLQIEAFKSSCSLKKPTSSLQSQTN 91

[Close]

BLAST of Cla005269 vs. TrEMBL
Match: A0A067EDM2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035370mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-13
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 5  TEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEALKKCL++N GD VKC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTSV 69
          ++ V
Sbjct: 64 NSGV 66

[Close]

BLAST of Cla005269 vs. TrEMBL
Match: A0A0B2RGP3_GLYSO (Autophagy-related protein 3 OS=Glycine soja GN=glysoja_026329 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 6   EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
           + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 335 DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 388

[Close]

BLAST of Cla005269 vs. TrEMBL
Match: K7LSA0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G005800 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 6  EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
          + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 7  DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 60

[Close]

BLAST of Cla005269 vs. NCBI nr
Match: gi|700201027|gb|KGN56160.1| (hypothetical protein Csa_3G081365 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1  MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSR VTKN SPCDVEALKKCLQ+NNGDRVKCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDTSV 69
          RNDFDT V
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Cla005269 vs. NCBI nr
Match: gi|643706129|gb|KDP22261.1| (hypothetical protein JCGZ_26092 [Jatropha curcas])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRN 63
          +S  V K +SPCDVEALKKCL+DN GD VKC+ QI+AFKSSCSLKKP  SLQS  N
Sbjct: 36 ESNGVKKVMSPCDVEALKKCLEDNKGDHVKCQLQIEAFKSSCSLKKPTSSLQSQTN 91

[Close]

BLAST of Cla005269 vs. NCBI nr
Match: gi|641832977|gb|KDO52000.1| (hypothetical protein CISIN_1g035370mg [Citrus sinensis])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 5  TEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEALKKCL++N GD VKC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTSV 69
          ++ V
Sbjct: 64 NSGV 66

[Close]

BLAST of Cla005269 vs. NCBI nr
Match: gi|947074977|gb|KRH23817.1| (hypothetical protein GLYMA_12G005800 [Glycine max])

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 6  EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
          + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 7  DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 60

[Close]

BLAST of Cla005269 vs. NCBI nr
Match: gi|734403254|gb|KHN32435.1| (Autophagy-related protein 3 [Glycine soja])

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 6   EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
           + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 335 DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 388

The following BLAST results are available for this feature:

BLAST of Cla005269 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G8_CUCSA	1.4e-26	89.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081365 PE=4 SV=1	[more]
A0A067JEH6_JATCU	7.9e-14	71.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26092 PE=4 SV=1	[more]
A0A067EDM2_CITSI	1.8e-13	62.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035370mg PE=4 SV=1	[more]
A0A0B2RGP3_GLYSO	2.3e-13	72.22	Autophagy-related protein 3 OS=Glycine soja GN=glysoja_026329 PE=3 SV=1	[more]
K7LSA0_SOYBN	2.3e-13	72.22	Uncharacterized protein OS=Glycine max GN=GLYMA_12G005800 PE=4 SV=1	[more]

BLAST of Cla005269 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201027\|gb\|KGN56160.1\|	2.0e-26	89.71	hypothetical protein Csa_3G081365 [Cucumis sativus]	[more]
gi\|643706129\|gb\|KDP22261.1\|	1.1e-13	71.43	hypothetical protein JCGZ_26092 [Jatropha curcas]	[more]
gi\|641832977\|gb\|KDO52000.1\|	2.5e-13	62.50	hypothetical protein CISIN_1g035370mg [Citrus sinensis]	[more]
gi\|947074977\|gb\|KRH23817.1\|	3.3e-13	72.22	hypothetical protein GLYMA_12G005800 [Glycine max]	[more]
gi\|734403254\|gb\|KHN32435.1\|	3.3e-13	72.22	Autophagy-related protein 3 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0032259	methylation
biological_process	GO:0015031	protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU29611	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU73015	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005269	Cla005269.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29611	WMU29611	transcribed_cluster
WMU73015	WMU73015	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 16..49 score: 7.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 14..48 score: 8.1
None	No IPR available	PANTHER	PTHR36856	FAMILY NOT NAMED	coord: 6..68 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005269	Cla97C10G189960	Watermelon (97103) v2	wmwmbB052
Cla005269	MELO3C025428	Melon (DHL92) v3.5.1	mewmB448
Cla005269	ClCG10G005770	Watermelon (Charleston Gray)	wcgwmB052
Cla005269	Cucsa.059670	Cucumber (Gy14) v1	cgywmB048
Cla005269	CmoCh04G010050	Cucurbita moschata (Rifu)	cmowmB653
Cla005269	Lsi05G006330	Bottle gourd (USVL1VR-Ls)	lsiwmB348
Cla005269	MELO3C025428.2	Melon (DHL92) v3.6.1	medwmB434
Cla005269	CsaV3_3G005460	Cucumber (Chinese Long) v3	cucwmB204
Cla005269	Bhi11G000525	Wax gourd	wgowmB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005269	Cucurbita pepo (Zucchini)	cpewmB002
Cla005269	Cucurbita pepo (Zucchini)	cpewmB386
Cla005269	Cucumber (Gy14) v2	cgybwmB183
Cla005269	Melon (DHL92) v3.6.1	medwmB544
Cla005269	Silver-seed gourd	carwmB0659
Cla005269	Silver-seed gourd	carwmB0791
Cla005269	Cucurbita maxima (Rimu)	cmawmB298
Cla005269	Cucurbita maxima (Rimu)	cmawmB659
Cla005269	Cucurbita moschata (Rifu)	cmowmB289
Cla005269	Wild cucumber (PI 183967)	cpiwmB193
Cla005269	Cucumber (Chinese Long) v2	cuwmB194