Cla97C10G189960 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G189960
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ribosomal RNA small subunit methyltransferase E
Location	Cla97Chr10 : 6417223 .. 6417429 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

mRNA sequence

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

Coding sequence (CDS)

ATGGATGGTATAACTGAAAAATCTAGGGTTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAAGAAATGTTTGCAGGATAACAATGGCGATCGTGTCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAATGACTTCGACACTAGTGTTTGA

Protein sequence

MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDFDTSV

Homology

[Close]

BLAST of Cla97C10G189960 vs. NCBI nr
Match: KGN56160.1 (hypothetical protein Csa_3G081365 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.7e-26
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSR VTKN SPCDVEALKKCLQ+NNGDRVKCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDTSV 69
          RNDFDT V
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Cla97C10G189960 vs. NCBI nr
Match: KDP22261.1 (hypothetical protein JCGZ_26092 [Jatropha curcas])

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-13
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRN 63
          +S  V K +SPCDVEALKKCL+DN GD VKC+ QI+AFKSSCSLKKP  SLQS  N
Sbjct: 36 ESNGVKKVMSPCDVEALKKCLEDNKGDHVKCQLQIEAFKSSCSLKKPTSSLQSQTN 91

[Close]

BLAST of Cla97C10G189960 vs. NCBI nr
Match: POF26711.1 (hypothetical protein CFP56_60860 [Quercus suber])

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
          +S  V K +SPCDVEALKKCL +N GD VKC+SQI+AFKSSCS+KKPNPS +S
Sbjct: 6  ESYTVKKIMSPCDVEALKKCLDENKGDYVKCQSQIEAFKSSCSIKKPNPSQES 58

[Close]

BLAST of Cla97C10G189960 vs. NCBI nr
Match: KDO52000.1 (hypothetical protein CISIN_1g035370mg [Citrus sinensis] >GAY41135.1 hypothetical protein CUMW_057110 [Citrus unshiu])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 5  TEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEALKKCL++N GD VKC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTSV 69
          ++ V
Sbjct: 64 NSGV 66

[Close]

BLAST of Cla97C10G189960 vs. NCBI nr
Match: KHN32435.1 (Autophagy-related protein 3 [Glycine soja])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 6   EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
           + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 335 DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 388

[Close]

BLAST of Cla97C10G189960 vs. TrEMBL
Match: tr|A0A0A0L2G8|A0A0A0L2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MDGITEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSR VTKN SPCDVEALKKCLQ+NNGDRVKCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDTSV 69
          RNDFDT V
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Cla97C10G189960 vs. TrEMBL
Match: tr|A0A2P4NA67|A0A2P4NA67_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60860 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
          +S  V K +SPCDVEALKKCL +N GD VKC+SQI+AFKSSCS+KKPNPS +S
Sbjct: 6  ESYTVKKIMSPCDVEALKKCLDENKGDYVKCQSQIEAFKSSCSIKKPNPSQES 58

[Close]

BLAST of Cla97C10G189960 vs. TrEMBL
Match: tr|A0A067JEH6|A0A067JEH6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26092 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  KSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRN 63
          +S  V K +SPCDVEALKKCL+DN GD VKC+ QI+AFKSSCSLKKP  SLQS  N
Sbjct: 36 ESNGVKKVMSPCDVEALKKCLEDNKGDHVKCQLQIEAFKSSCSLKKPTSSLQSQTN 91

[Close]

BLAST of Cla97C10G189960 vs. TrEMBL
Match: tr|K7LSA0|K7LSA0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G005800 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.5e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 6  EKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQS 60
          + S  V K +S CDVEALKKCL++N GD VKC SQI+AFKSSCSLKKPNPSL S
Sbjct: 7  DDSSSVKKIISACDVEALKKCLEENKGDYVKCHSQIEAFKSSCSLKKPNPSLDS 60

[Close]

BLAST of Cla97C10G189960 vs. TrEMBL
Match: tr|A0A2H5NN95|A0A2H5NN95_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057110 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.5e-13
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 5  TEKSRVVTKNLSPCDVEALKKCLQDNNGDRVKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEALKKCL++N GD VKC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTSV 69
          ++ V
Sbjct: 64 NSGV 66

The following BLAST results are available for this feature:

BLAST of Cla97C10G189960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56160.1	8.7e-26	89.71	hypothetical protein Csa_3G081365 [Cucumis sativus]	[more]
KDP22261.1	6.4e-13	71.43	hypothetical protein JCGZ_26092 [Jatropha curcas]	[more]
POF26711.1	6.4e-13	71.70	hypothetical protein CFP56_60860 [Quercus suber]	[more]
KDO52000.1	1.4e-12	62.50	hypothetical protein CISIN_1g035370mg [Citrus sinensis] >GAY41135.1 hypothetical...	[more]
KHN32435.1	1.4e-12	72.22	Autophagy-related protein 3 [Glycine soja]	[more]

BLAST of Cla97C10G189960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2G8\|A0A0A0L2G8_CUCSA	5.7e-26	89.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1	[more]
tr\|A0A2P4NA67\|A0A2P4NA67_QUESU	4.3e-13	71.70	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60860 PE=4 SV=1	[more]
tr\|A0A067JEH6\|A0A067JEH6_JATCU	4.3e-13	71.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26092 PE=4 SV=1	[more]
tr\|K7LSA0\|K7LSA0_SOYBN	9.5e-13	72.22	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G005800 PE=4 SV=1	[more]
tr\|A0A2H5NN95\|A0A2H5NN95_CITUN	9.5e-13	62.50	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057110 PE=4 SV=1	[more]

BLAST of Cla97C10G189960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G189960 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006914	autophagy
biological_process	GO:0015031	protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G189960.1	Cla97C10G189960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36856	FAMILY NOT NAMED	coord: 6..66
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	SSF47072	Cysteine alpha-hairpin motif	coord: 14..48

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G189960	Cla005269	Watermelon (97103) v1	wmwmbB052
Cla97C10G189960	MELO3C025428	Melon (DHL92) v3.5.1	mewmbB426
Cla97C10G189960	ClCG10G005770	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G189960	Cucsa.059670	Cucumber (Gy14) v1	cgywmbB048
Cla97C10G189960	CmoCh04G010050	Cucurbita moschata (Rifu)	cmowmbB689
Cla97C10G189960	Lsi05G006330	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G189960	MELO3C025428.2	Melon (DHL92) v3.6.1	medwmbB417
Cla97C10G189960	CsaV3_3G005460	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G189960	Bhi11G000525	Wax gourd	wgowmbB003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G189960	Watermelon (97103) v2	wmbwmbB050
Cla97C10G189960	Watermelon (97103) v2	wmbwmbB053
Cla97C10G189960	Silver-seed gourd	carwmbB0686
Cla97C10G189960	Silver-seed gourd	carwmbB0829
Cla97C10G189960	Silver-seed gourd	carwmbB0944
Cla97C10G189960	Silver-seed gourd	carwmbB1075
Cla97C10G189960	Cucumber (Gy14) v2	cgybwmbB016
Cla97C10G189960	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G189960	Cucurbita maxima (Rimu)	cmawmbB018
Cla97C10G189960	Cucurbita maxima (Rimu)	cmawmbB218
Cla97C10G189960	Cucurbita maxima (Rimu)	cmawmbB336
Cla97C10G189960	Cucurbita maxima (Rimu)	cmawmbB444
Cla97C10G189960	Cucurbita maxima (Rimu)	cmawmbB718
Cla97C10G189960	Cucurbita moschata (Rifu)	cmowmbB006
Cla97C10G189960	Cucurbita moschata (Rifu)	cmowmbB202
Cla97C10G189960	Cucurbita moschata (Rifu)	cmowmbB317
Cla97C10G189960	Cucurbita moschata (Rifu)	cmowmbB425
Cla97C10G189960	Wild cucumber (PI 183967)	cpiwmbB016
Cla97C10G189960	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G189960	Wild cucumber (PI 183967)	cpiwmbB441
Cla97C10G189960	Cucumber (Chinese Long) v3	cucwmbB015
Cla97C10G189960	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G189960	Bottle gourd (USVL1VR-Ls)	lsiwmbB264
Cla97C10G189960	Melon (DHL92) v3.6.1	medwmbB514
Cla97C10G189960	Watermelon (Charleston Gray)	wcgwmbB175
Cla97C10G189960	Watermelon (Charleston Gray)	wcgwmbB219
Cla97C10G189960	Wax gourd	wgowmbB555