CsaV3_3G004390 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G004390
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein, putative
Locationchr3 : 3712855 .. 3714049 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCTTAGTTTCTAACCCTCTTATTACCCATCCCACTCTTCCTCCTTCCACTACTTTTCCCCTCAAACCGCGCTCTAATTCCATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTCAAATCACATGGCAAATTTTCGTTGGAGCGATTGGTAACAGCAATGTTTTTTTTTTTTTTTTTTATTATTATTATTATTTCTCTTGTTTCTTTTGATATGTTTTGTATCATCTATATTTGATCCGTTTTGATATTTGGTTGTAGCTGGAGTGACGCCCTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTGTGAGTTTTTTTTTTGGGACTTTTTCAAGTGATTTGTTGTTTCTTCTGTTTGTGTTTTCTTATCATTAGTGGAATTTAAAACTGTAGAGGGTGCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCCGAATGTGGTAATAGTTCTTTTTTGTTGTAATTCTTCTTATTGTTAATCATTATGTTGAACTGAAAAAGTGTTGTTAATGAAATTTTGTGGAACAAAATCATAACAATTATGAAATTCATAGACAATATTCAAATGAGCAACTAAGTTTTTGTTTTTTTGTTTTTCCTTTTAAGTAAGTTAAAAGTACTTGATACTAATAATATGTTCATATTTTTTATATTATGTTACAATGGATATGTCAATTCACTTTGAATCTATGTTCATAGAGAAATGTCAACCATGGAAACTATACCTTGCTTATATTGAGGCTGCAAGATGCTGATTCCTTCCCCAAAATTTTAAAACATTTGTAAATATTTGGACGTTTTAATTTTAAACGGCCTATTTCTTCTTATGTTAAGTATAGTTTCATGGCTTGTAAGCTTGTTATTAATCAATCATTTTGGTAAAGCACTAAACTGAGAATTCTTAACCAATAATTATTAAATTAGAAACAAGCTCATATAAAAAACATATAGATATTTAGCCGTAATGTTCCAACAGTATAGTTAGAAAAAAGAAAAATTATTCCAGGTAGAATATGACTGTGAGCTCCTTCCTTGTTCTTGACATTTATCGGTTGGACAGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

mRNA sequence

ATGGAAGCCTTAGTTTCTAACCCTCTTATTACCCATCCCACTCTTCCTCCTTCCACTACTTTTCCCCTCAAACCGCGCTCTAATTCCATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTCAAATCACATGGCAAATTTTCGTTGGAGCGATTGCTGGAGTGACGCCCTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTAGGGTGCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCCGAATGTGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

Coding sequence (CDS)

ATGGAAGCCTTAGTTTCTAACCCTCTTATTACCCATCCCACTCTTCCTCCTTCCACTACTTTTCCCCTCAAACCGCGCTCTAATTCCATCCATAATCGGAGACGAACACCCGCGTTTGCTGCCATTGACGGTGCTTCTTTGCTTCCAGCTGACTCCACTCAGGTTCAAATCACATGGCAAATTTTCGTTGGAGCGATTGCTGGAGTGACGCCCTTTGTGGTGGCCGGAATCGAATTCAGCAAGAGAATTAGGGTGCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCCGAATGTGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGATAA

Protein sequence

MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWRRFFWG
BLAST of CsaV3_3G004390 vs. NCBI nr
Match: XP_004149576.1 (PREDICTED: uncharacterized protein LOC101220311 [Cucumis sativus] >KGN56051.1 hypothetical protein Csa_3G061530 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60
           MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ
Sbjct: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 125

BLAST of CsaV3_3G004390 vs. NCBI nr
Match: XP_008449071.1 (PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 7.9e-57
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60
           MEAL+SNPLITHPTL  S     KPRSNS+HNRRRTPAFAAIDGAS L ADSTQV+ITWQ
Sbjct: 1   MEALISNPLITHPTLRRS-----KPRSNSMHNRRRTPAFAAIDGASSLAADSTQVEITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVLRDDDYFRCP+CGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 120

BLAST of CsaV3_3G004390 vs. NCBI nr
Match: XP_022935718.1 (uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937262.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937933.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022938581.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_023540549.1 uncharacterized protein LOC111800877 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 99/136 (72.79%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 1   MEALVSNPLITHP--------TLP-PSTTFPLKPRSNSIHNRRRTPAFAAIDGASL--LP 60
           MEAL+  P+ T P        T P P + FPL  RSNS++ RRRTP FAAIDGASL    
Sbjct: 1   MEALL--PISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAA 60

Query: 61  ADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPE 120
           AD TQV+ITWQI VGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVL D DYFRCPE
Sbjct: 61  ADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPE 120

Query: 121 CGGFLPWQSWRRFFWG 126
           CGGFLPWQSWRRFF G
Sbjct: 121 CGGFLPWQSWRRFFSG 134

BLAST of CsaV3_3G004390 vs. NCBI nr
Match: XP_023005598.1 (uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharacterized protein LOC111498537 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 99/136 (72.79%), Postives = 105/136 (77.21%), Query Frame = 0

Query: 1   MEALVSNPLITHP--TLP-------PSTTFPLKPRSNSIHNRRRTPAFAAIDGASL--LP 60
           MEAL+  P+ T P   LP       P + FPL  RSNS++ RRRTP FAAIDGASL    
Sbjct: 1   MEALL--PISTSPFRFLPTANASPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAA 60

Query: 61  ADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPE 120
           AD TQV+ITWQI VGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVL D DYFRCPE
Sbjct: 61  ADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPE 120

Query: 121 CGGFLPWQSWRRFFWG 126
           CGGFLPWQSWRRFF G
Sbjct: 121 CGGFLPWQSWRRFFSG 134

BLAST of CsaV3_3G004390 vs. NCBI nr
Match: XP_023540547.1 (uncharacterized protein LOC111800877 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 9.4e-42
Identity = 99/139 (71.22%), Postives = 105/139 (75.54%), Query Frame = 0

Query: 1   MEALVSNPLITHP--------TLP-PSTTFPLKPRSNSIHNRRRTPAFAAIDGASL--LP 60
           MEAL+  P+ T P        T P P + FPL  RSNS++ RRRTP FAAIDGASL    
Sbjct: 1   MEALL--PISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAA 60

Query: 61  ADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPE 120
           AD TQV+ITWQI VGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVL D DYFRCPE
Sbjct: 61  ADPTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPE 120

Query: 121 C---GGFLPWQSWRRFFWG 126
           C   GGFLPWQSWRRFF G
Sbjct: 121 CGLAGGFLPWQSWRRFFSG 137

BLAST of CsaV3_3G004390 vs. TAIR10
Match: AT5G55570.1 (unknown protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 50  ADSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPE 109
           A++ + +ITWQI VG IAG+ PFVVAG+EFSKRI  QKRC+ECGG+GLV RD  YFR   
Sbjct: 68  AETGKSEITWQIIVGTIAGIIPFVVAGVEFSKRIIAQKRCEECGGTGLVSRDKKYFRXXX 127

Query: 110 CGGFLPWQSWRRFFWG 126
             GFLPWQSWRRFF G
Sbjct: 128 XXGFLPWQSWRRFFTG 143

BLAST of CsaV3_3G004390 vs. TrEMBL
Match: tr|A0A0A0L7H1|A0A0A0L7H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.6e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60
           MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ
Sbjct: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 125

BLAST of CsaV3_3G004390 vs. TrEMBL
Match: tr|A0A1S3BLU9|A0A1S3BLU9_CUCME (uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.2e-57
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MEALVSNPLITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 60
           MEAL+SNPLITHPTL  S     KPRSNS+HNRRRTPAFAAIDGAS L ADSTQV+ITWQ
Sbjct: 1   MEALISNPLITHPTLRRS-----KPRSNSMHNRRRTPAFAAIDGASSLAADSTQVEITWQ 60

Query: 61  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 120
           IFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVLRDDDYFRCP+CGGFLPWQSWR
Sbjct: 61  IFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWR 120

Query: 121 RFFWG 126
           RFFWG
Sbjct: 121 RFFWG 120

BLAST of CsaV3_3G004390 vs. TrEMBL
Match: tr|B9SST3|B9SST3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0047320 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 76/132 (57.58%), Postives = 91/132 (68.94%), Query Frame = 0

Query: 1   MEALVSNPLITHPTLPPSTT--------FPLKPRS-NSIHNRRRTPAFAAIDGASLLPAD 60
           MEA VS+ LI    L   T         +P   R+   I NR+ T   AA++  S   AD
Sbjct: 1   MEAAVSSSLILTSPLNTKTLSRNRVITGYPKSTRTFRLIKNRKLTTTIAAVNEVS-AAAD 60

Query: 61  STQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECG 120
           S QV++TWQI VGA+AGVTPFVVAGIEFSKRI  Q+RC+ CGG+GLV+R+ DYFRCP CG
Sbjct: 61  SGQVEVTWQIIVGAVAGVTPFVVAGIEFSKRIIAQRRCEICGGAGLVMREKDYFRCPGCG 120

Query: 121 GFLPWQSWRRFF 124
           GFLPWQSW+RFF
Sbjct: 121 GFLPWQSWKRFF 131

BLAST of CsaV3_3G004390 vs. TrEMBL
Match: tr|A0A061F474|A0A061F474_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030732 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 69/126 (54.76%), Postives = 85/126 (67.46%), Query Frame = 0

Query: 8   PLITHPTLP----PSTTFPLKPRSNSIHNRRRTPAFAAIDGASL----LPADSTQVQITW 67
           PLI+ PT+     P+  F       ++  + +      +  AS+      AD  +V ITW
Sbjct: 14  PLISTPTVTKYPNPTVKFTCNRTCKTLTGKNQWLMTTKVSAASIHDVSAVADPARVDITW 73

Query: 68  QIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSW 126
           QI VGAIAGVTPF+VAGIEFSKRI  Q+RC+ECGGSGLV RD+DYF+CP CGGFLPWQSW
Sbjct: 74  QIVVGAIAGVTPFIVAGIEFSKRIIAQRRCEECGGSGLVFRDNDYFKCPGCGGFLPWQSW 133

BLAST of CsaV3_3G004390 vs. TrEMBL
Match: tr|V7BD19|V7BD19_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G275600g PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 30  IHNRRRTPAFAAIDGASLLPA-DSTQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKR 89
           I N RR     A++   +    D   V++TWQI VGAIAGVTPFVVAGIEF KRI  QKR
Sbjct: 40  IKNGRRRVTVGAVNVEDITTVLDPAPVEVTWQIVVGAIAGVTPFVVAGIEFRKRIIAQKR 99

Query: 90  CKECGGSGLVLRDDDYFRCPECGGFLPWQSWRRFFWG 126
           C+ECGGSGLVLR+ +YFRCPECGGFLPWQSW+RFF G
Sbjct: 100 CEECGGSGLVLREKEYFRCPECGGFLPWQSWKRFFSG 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149576.19.9e-68100.00PREDICTED: uncharacterized protein LOC101220311 [Cucumis sativus] >KGN56051.1 hy... [more]
XP_008449071.17.9e-5788.00PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo][more]
XP_022935718.12.2e-4372.79uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 unchar... [more]
XP_023005598.12.9e-4372.79uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharac... [more]
XP_023540547.19.4e-4271.22uncharacterized protein LOC111800877 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G55570.11.8e-2668.42unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L7H1|A0A0A0L7H1_CUCSA6.6e-68100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1[more]
tr|A0A1S3BLU9|A0A1S3BLU9_CUCME5.2e-5788.00uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=... [more]
tr|B9SST3|B9SST3_RICCO1.3e-3157.58Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0047320 PE=4 SV=1[more]
tr|A0A061F474|A0A061F474_THECC7.1e-3054.76Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_030732 PE=4 ... [more]
tr|V7BD19|V7BD19_PHAVU7.1e-3067.01Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G275600g PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004390.1CsaV3_3G004390.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36809FAMILY NOT NAMEDcoord: 29..124