Cla004490 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004490
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Homology to unknown gene (AHRD V1 -- Q00XT5_OSTTA); contains Interpro domain(s) IPR014900 Transcription factor AL2, zinc ribbon
Location	Chr10 : 4220826 .. 4221414 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTTACCCGTACTCTCAATTTCTAACGCTCTCTTTCCATTAGCTCCCACTCCCAACCCGACTCTTCGTCGTTCCAATACTTCTCCCCTCAAACCGCCCTCAATTTCGATCCAAAATCGGAGACGAACAGCCATCTTTGCCGCCATTGACGGTGCTTCGCTTGCAGCCGACCCCTCTCAGGTCGAAATCACTTGGCAAATTTTCGTCGGAGCGATTGGTAATGGGAATGATTTTCGATTATTTGTGTAGTTTCTTTTGATTTTTTTATTATCGAAATCTGATCGGTGGATTGGGATTTTGGTGTCTGATGTTGGTTGAAGCTGGAGTGACTCCGTTTGTGGTGGCCGGAATCGAGTTCAGCAAGAGAATTGTGAGTTTTTGGGGCTTTTTCAAGTGATTGGTTTGCTTTGTTCTGTTTGTGTTTTCTTAGCATTATTGGAATTCAAAATTTTAGGTGGCGCAGAAGAGATGTAAAGAATGTGGTGGTTCCGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCTGAATGTGGTAATAGTTTCTTTTTGCATACTGAAGTATTTCTGTTCATAATTTAG

mRNA sequence

ATGGAAGCTTTACCCGTACTCTCAATTTCTAACGCTCTCTTTCCATTAGCTCCCACTCCCAACCCGACTCTTCGTCGTTCCAATACTTCTCCCCTCAAACCGCCCTCAATTTCGATCCAAAATCGGAGACGAACAGCCATCTTTGCCGCCATTGACGGTGCTTCGCTTGCAGCCGACCCCTCTCAGGTCGAAATCACTTGGCAAATTTTCGTCGGAGCGATTGCTGGAGTGACTCCGTTTGTGGTGGCCGGAATCGAGTTCAGCAAGAGAATTGTGGCGCAGAAGAGATGTAAAGAATGTGGTGGTTCCGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCTGAATGTGGTAATAGTTTCTTTTTGCATACTGAAGTATTTCTGTTCATAATTTAG

Coding sequence (CDS)

ATGGAAGCTTTACCCGTACTCTCAATTTCTAACGCTCTCTTTCCATTAGCTCCCACTCCCAACCCGACTCTTCGTCGTTCCAATACTTCTCCCCTCAAACCGCCCTCAATTTCGATCCAAAATCGGAGACGAACAGCCATCTTTGCCGCCATTGACGGTGCTTCGCTTGCAGCCGACCCCTCTCAGGTCGAAATCACTTGGCAAATTTTCGTCGGAGCGATTGCTGGAGTGACTCCGTTTGTGGTGGCCGGAATCGAGTTCAGCAAGAGAATTGTGGCGCAGAAGAGATGTAAAGAATGTGGTGGTTCCGGGCTTGTTCTTAGAGATGATGACTACTTTCGTTGCCCTGAATGTGGTAATAGTTTCTTTTTGCATACTGAAGTATTTCTGTTCATAATTTAG

Protein sequence

MEALPVLSISNALFPLAPTPNPTLRRSNTSPLKPPSISIQNRRRTAIFAAIDGASLAADPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECGNSFFLHTEVFLFII

Homology

[Close]

BLAST of Cla004490 vs. TrEMBL
Match: A0A0A0L7H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061530 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 90/120 (75.00%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEALPVLSISNALFPLAPTPNPTLRRSNTSPLKPPSISIQNRRRTAIFAAIDGASLA-AD 60
           MEAL    +SN L       +PTL  S T PLKP S SI NRRRT  FAAIDGASL  AD
Sbjct: 1   MEAL----VSNPLIT-----HPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPAD 60

Query: 61  PSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
            +QV+ITWQIFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVLRDDDYFRCPECG
Sbjct: 61  STQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECG 111

[Close]

BLAST of Cla004490 vs. TrEMBL
Match: B9SST3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0047320 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-27
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 8   SISNALFPLAPTPNPTLRRSNTSPLKPPSIS----IQNRRRTAIFAAIDGASLAADPSQV 67
           ++S++L   +P    TL R+      P S      I+NR+ T   AA++  S AAD  QV
Sbjct: 4   AVSSSLILTSPLNTKTLSRNRVITGYPKSTRTFRLIKNRKLTTTIAAVNEVSAAADSGQV 63

Query: 68  EITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
           E+TWQI VGA+AGVTPFVVAGIEFSKRI+AQ+RC+ CGG+GLV+R+ DYFRCP CG
Sbjct: 64  EVTWQIIVGAVAGVTPFVVAGIEFSKRIIAQRRCEICGGAGLVMREKDYFRCPGCG 119

[Close]

BLAST of Cla004490 vs. TrEMBL
Match: A0A151QXQ0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_043889 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 1


Query: 1   MEALPVLSISNALFPLAPTPNPTLRRSNTSPLKPPSISIQN--RRRTAIFAA-IDGASLA 60
           MEA+   S+S        T +   R  + +P K   + +++  RRRT + A  ++  +  
Sbjct: 1   MEAVAASSLSMLSLGSMKTRSRVTRNCHVTPRKGCDVWVKSGRRRRTRVGAVNVEDVTTV 60

Query: 61  ADPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPE 120
            D + VE+TWQI VG IAGVTPFVVAGIEFSKRI+AQKRC+ECGGSGLVLR+ +YFRCPE
Sbjct: 61  LDRAPVEVTWQIVVGTIAGVTPFVVAGIEFSKRIIAQKRCEECGGSGLVLREKEYFRCPE 120

[Close]

BLAST of Cla004490 vs. TrEMBL
Match: A0A0D2Q382_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G096500 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1


Query: 7   LSISNALFPLAPTPN--PTLRRSNTSPLKPPSIS-----IQNRRR--TAIFAAIDGASLA 66
           L IS +L P    P   PT  R +   +K  SI      I+N +R  T + A I   S+ 
Sbjct: 5   LCISPSLTPPVSLPQSKPTFTRYSNPTVKVTSIQRCKSLIRNSQRLTTKVAANIHDVSVV 64

Query: 67  ADPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPE 120
           ADP++V+ITWQI VGA+AGVTPF+VAGIEFSKRI+AQ+RC EC GSGLV R +DYF+CPE
Sbjct: 65  ADPARVDITWQIVVGALAGVTPFIVAGIEFSKRIIAQRRCGECRGSGLVFRGNDYFKCPE 124

[Close]

BLAST of Cla004490 vs. TrEMBL
Match: D7T880_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01750 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 26  RSNTSPLKPPSISIQNRRRTAIFAAIDGASLAADPSQVEITWQIFVGAIAGVTPFVVAGI 85
           +S  S +   ++  ++RR+TA  + ++  S  ADP+QVE+TWQI VGA+AGVTPF+VAGI
Sbjct: 29  KSAVSFISRSNLLRKSRRQTARVSVVNDVSAVADPAQVEVTWQIVVGALAGVTPFIVAGI 88

Query: 86  EFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
           EFSKRIVAQKRC  CGGSGLVLRD  YFRCP CG
Sbjct: 89  EFSKRIVAQKRCGVCGGSGLVLRDKYYFRCPGCG 122

[Close]

BLAST of Cla004490 vs. NCBI nr
Match: gi|449463713|ref|XP_004149576.1| (PREDICTED: uncharacterized protein LOC101220311 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-37
Identity = 90/120 (75.00%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 1   MEALPVLSISNALFPLAPTPNPTLRRSNTSPLKPPSISIQNRRRTAIFAAIDGASLA-AD 60
           MEAL    +SN L       +PTL  S T PLKP S SI NRRRT  FAAIDGASL  AD
Sbjct: 1   MEAL----VSNPLIT-----HPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPAD 60

Query: 61  PSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
            +QV+ITWQIFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSGLVLRDDDYFRCPECG
Sbjct: 61  STQVQITWQIFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECG 111

[Close]

BLAST of Cla004490 vs. NCBI nr
Match: gi|659096394|ref|XP_008449071.1| (PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 8.4e-37
Identity = 91/120 (75.83%), Postives = 96/120 (80.00%), Query Frame = 1


Query: 1   MEALPVLSISNALFPLAPTPNPTLRRSNTSPLKPPSISIQNRRRTAIFAAIDGAS-LAAD 60
           MEAL    ISN L       +PTLRRS     KP S S+ NRRRT  FAAIDGAS LAAD
Sbjct: 1   MEAL----ISNPLIT-----HPTLRRS-----KPRSNSMHNRRRTPAFAAIDGASSLAAD 60

Query: 61  PSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
            +QVEITWQIFVGAIAGVTPFVVAGIEFSKRI+AQKRCKECGGSGLVLRDDDYFRCP+CG
Sbjct: 61  STQVEITWQIFVGAIAGVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCG 106

[Close]

BLAST of Cla004490 vs. NCBI nr
Match: gi|223531532|gb|EEF33363.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 8   SISNALFPLAPTPNPTLRRSNTSPLKPPSIS----IQNRRRTAIFAAIDGASLAADPSQV 67
           ++S++L   +P    TL R+      P S      I+NR+ T   AA++  S AAD  QV
Sbjct: 4   AVSSSLILTSPLNTKTLSRNRVITGYPKSTRTFRLIKNRKLTTTIAAVNEVSAAADSGQV 63

Query: 68  EITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
           E+TWQI VGA+AGVTPFVVAGIEFSKRI+AQ+RC+ CGG+GLV+R+ DYFRCP CG
Sbjct: 64  EVTWQIIVGAVAGVTPFVVAGIEFSKRIIAQRRCEICGGAGLVMREKDYFRCPGCG 119

[Close]

BLAST of Cla004490 vs. NCBI nr
Match: gi|1000946818|ref|XP_015580768.1| (PREDICTED: uncharacterized protein LOC8277583 [Ricinus communis])

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 8   SISNALFPLAPTPNPTLRRSNTSPLKPPSIS----IQNRRRTAIFAAIDGASLAADPSQV 67
           ++S++L   +P    TL R+      P S      I+NR+ T   AA++  S AAD  QV
Sbjct: 4   AVSSSLILTSPLNTKTLSRNRVITGYPKSTRTFRLIKNRKLTTTIAAVNEVSAAADSGQV 63

Query: 68  EITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYFRCPECG 120
           E+TWQI VGA+AGVTPFVVAGIEFSKRI+AQ+RC+ CGG+GLV+R+ DYFRCP CG
Sbjct: 64  EVTWQIIVGAVAGVTPFVVAGIEFSKRIIAQRRCEICGGAGLVMREKDYFRCPGCG 119

[Close]

BLAST of Cla004490 vs. NCBI nr
Match: gi|802588588|ref|XP_012070970.1| (PREDICTED: uncharacterized protein LOC105633060 [Jatropha curcas])

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 1   MEALPVLSISNALFPLAPT--PNPTLRRSNTSPLKPPSIS-----IQNRRRTAIFAAIDG 60
           MEA   LS S++L   +PT   + +LR  NT   K          I NRR T   AAI+ 
Sbjct: 1   MEA--ALSSSSSLLLTSPTNSKSKSLRHRNTLITKHSKSMANIRLIVNRRSTTKIAAIND 60

Query: 61  ASLAADPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLRDDDYF 120
            S AAD  QVE+TWQI VGA AGVTPF+VAGIEFSKRI+AQ+RC+ CGGSGLV+R++DYF
Sbjct: 61  VSAAADLGQVEVTWQIVVGATAGVTPFIVAGIEFSKRIIAQRRCEVCGGSGLVVRENDYF 120

The following BLAST results are available for this feature:

BLAST of Cla004490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H1_CUCSA	1.5e-37	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061530 PE=4 SV=1	[more]
B9SST3_RICCO	4.2e-27	55.17	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0047320 PE=4 SV=1	[more]
A0A151QXQ0_CAJCA	2.3e-25	52.46	Uncharacterized protein OS=Cajanus cajan GN=KK1_043889 PE=4 SV=1	[more]
A0A0D2Q382_GOSRA	2.3e-25	54.92	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G096500 PE=4 SV=1	[more]
D7T880_VITVI	2.3e-25	62.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01750 PE=4 SV=...	[more]

BLAST of Cla004490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463713\|ref\|XP_004149576.1\|	2.2e-37	75.00	PREDICTED: uncharacterized protein LOC101220311 [Cucumis sativus]	[more]
gi\|659096394\|ref\|XP_008449071.1\|	8.4e-37	75.83	PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo]	[more]
gi\|223531532\|gb\|EEF33363.1\|	6.0e-27	55.17	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000946818\|ref\|XP_015580768.1\|	6.0e-27	55.17	PREDICTED: uncharacterized protein LOC8277583 [Ricinus communis]	[more]
gi\|802588588\|ref\|XP_012070970.1\|	2.3e-26	57.14	PREDICTED: uncharacterized protein LOC105633060 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014900	VLTF-3_Zn_ribbon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU41473	watermelon EST collection version 2.0	transcribed_cluster
WMU62391	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004490	Cla004490.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU41473	WMU41473	transcribed_cluster
WMU62391	WMU62391	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014900	Viral late gene transcription factor 3 , zinc ribbon	PFAM	PF08792	A2L_zn_ribbon	coord: 94..122 score: 5.
None	No IPR available	PANTHER	PTHR36809	FAMILY NOT NAMED	coord: 37..119 score: 4.6
None	No IPR available	PANTHER	PTHR36809:SF1	SUBFAMILY NOT NAMED	coord: 37..119 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004490	Cla97C10G189010	Watermelon (97103) v2	wmwmbB057
Cla004490	Csa3G061530	Cucumber (Chinese Long) v2	cuwmB201
Cla004490	MELO3C014132	Melon (DHL92) v3.5.1	mewmB447
Cla004490	ClCG10G004590	Watermelon (Charleston Gray)	wcgwmB057
Cla004490	CSPI03G04390	Wild cucumber (PI 183967)	cpiwmB201
Cla004490	Cucsa.042300	Cucumber (Gy14) v1	cgywmB017
Cla004490	CmaCh06G006600	Cucurbita maxima (Rimu)	cmawmB783
Cla004490	CmoCh06G006690	Cucurbita moschata (Rifu)	cmowmB776
Cla004490	Lsi05G005210	Bottle gourd (USVL1VR-Ls)	lsiwmB351
Cla004490	MELO3C014132.2	Melon (DHL92) v3.6.1	medwmB439
Cla004490	Carg23557	Silver-seed gourd	carwmB0010
Cla004490	CsaV3_3G004390	Cucumber (Chinese Long) v3	cucwmB210
Cla004490	Bhi11G000390	Wax gourd	wgowmB023

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004490	Cucurbita maxima (Rimu)	cmawmB294
Cla004490	Cucurbita maxima (Rimu)	cmawmB512
Cla004490	Cucurbita moschata (Rifu)	cmowmB286
Cla004490	Cucurbita moschata (Rifu)	cmowmB504
Cla004490	Wild cucumber (PI 183967)	cpiwmB466
Cla004490	Cucurbita pepo (Zucchini)	cpewmB203
Cla004490	Cucurbita pepo (Zucchini)	cpewmB214
Cla004490	Cucurbita pepo (Zucchini)	cpewmB278
Cla004490	Cucurbita pepo (Zucchini)	cpewmB828
Cla004490	Cucurbita pepo (Zucchini)	cpewmB834
Cla004490	Bottle gourd (USVL1VR-Ls)	lsiwmB050
Cla004490	Cucumber (Gy14) v2	cgybwmB189
Cla004490	Silver-seed gourd	carwmB0331
Cla004490	Silver-seed gourd	carwmB0586
Cla004490	Watermelon (97103) v2	wmwmbB052