CsaV3_1G046300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G046300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMediator of RNA polymerase II transcription subunit 22-like protein
Locationchr1 : 32124871 .. 32127976 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATTGAGAATCGTGTCATGAAAGATTATGTAAGCAGATTTGGCACTTCTCAACTTTTTTTTTTCTCTATAATAAAAGGACATAAAACCCATGGGATTTTCTTCCCTTTTTTCTTGGTGGGCTAAATTTTTATAAGAGCCCATTAACGACCCATATCTAAGCCCATCTCAACTATTGAATTCCACTCGGTGTCTAGGGCTTCGTCATCCTCTGTTCGTGTTGCTTTTTTGTAACGCCGGCAACGCCCATAAGCTCCGACCATCGACACGGCCACACCTTCCACGAACTATCACCGACGACGTTCCACCAGAGTTTTTCTCCATTTTTGTCGACGTGTTATAGACCCACTCTCATTCAACCTCAAATTTGAGTTTCCCATTTCTTAATTGGTTAGTTATATTACATGTTAGAATTTGGGAAAGTCTTGTTGAACTGGTTAGAAAGTGTTTTGAAGATTAGTTTTCTTGATTGGATTTATAGTTTAAATTGTTAATGGTTATGTTTGTCGTGTTAAATTTTTGGGCGTTACATTTTTCTTCCCCAATGGTTCTAATTCCCTTTCGTTTCGATCGCCTTGGCGTCATTGCAGAATTGATTCAATTCCCATTTCTATCTATTATTATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTAAAACTCTTTCATTTTTATTGTAATTCTCTTTTGTGGTTTATCTGCTTGATCTTCTTGATTTAACAACCTCATGTGTGGAATTCATAATTAACTTACCGTTGTTTCGTCAGGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTAAGATACTATATTTTCCCTTGATTGTTTACTCTCTTTGTTTGTGATGCTCCTTTTAGGTTGCCATCTGGATAGATAGATAGCTCTTTTGTTCTTCTACAATTGAATGATAATAATCTTATGAAGCCTTGATTTTGTGGGATTGAATGATTTTGCAATAAATTTAGTTGCTTATGCGTCTCTTCCAACATCAGTGAGTATTTCTTCTCCTCTAGCTCCTATTCCAAGAAAATTCTCTTCTTTAGTTGAGGTGGTCTTCATATTCGAATATTTTTGCGGGATCCCAATTGATTCTTCAGAAAAACTTAATTGAGCTTACCTTAGCAATTCATGCAACATCTCGCCTCGATTTGGTTTTAGTTCATGCAATAACAACAGTTGTTTTTTACCAAAAAGTTCATGAAATCATTATGGAGCTTCAATGAAGTCGGTTGGGTTAATGTTGAATCTACTGCGAGATGGAGTGTTTTACTGATTTTGTAGGATGATATGAAGATAAAAGTTTTGGTGTTTCTTAAAGGAGGGTACATTTTCTCAATTAAAATCTATTTTCAGCACAAGTCAATTTGTTGGGTAACAAAGATTTATGGGCTAATTGACTGTAGAGAAATTTTGATAGACCGTCATGTCATAGCATTTGTAGAACAGTTGGTGGTGAGATCTTTTTTAGAGAAAGTATTTTGGCCTGCTTTTGGTAGTTAATTTATTGGTTCTTGTTATCAGCTGCTGTGTATGCTTTTCAAGGTTTCTCTGGACTTGAGAGAATTGGTTTGACGAGTCTTTCTTTGTTTCTTGGCTGTTCTCACTTGATTGCAATTGTTTTAAGGTCTTGTTCTGTTCTCTTTTGGGAGTTTGTATCCTTTGAAGAAGTTATTCCTTGTTGAAAACTCTCATTTTTGGTTTCAAACTATCAAGGTTCTTATATTCATAATGATCATTCACATATAAGATTATAGGCAATAATATATCAGGGATTTATTTTGTCCTTTTCATTATTATTGTGATGGCTACAATTTAGTGTTTCTATACTTGTTTGTTAACAGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGATTTAGAGTGGAAAGTGGAATTAATGATGCGATGCTGTTGGCTTCTAAACTCAGTTGCTTGCTAACATGGATAATGAAACGTAATATAACACTTCTAACTTTTTCTCTCTCGTTTTACTATAACTTCCTTCTTCACTTGAAAGTGCCTAAAAAAATAGCAAACATGATAGGAAATAAGTAACTCATTCCGTTGTCTGAATTAATTCAGAGAGGACGAAACATGTATGTTGACTTTGGCAGGTAAATTCAGAAATTAATTTTATATAGTTTGATAAGAAGATAATATAATTAATTCATGATGAATGAGGAGGCAACTAAGGAGATGATGAATAAGAAAGTAACAAGGAGAAAACAAAAAAAAGGAAGGAAGCCATTTTGATACGTTGGTAATTTGATGTTCTTCAGAAACTCCTTTATTTGATACAGGAAATCTCACTGTTGTTCATGCTTGCTTCCCTCCTCATTTCCCAACTTCAAATTGGTATATATCTTCTTCTTAATTTTGTGTAAACCTATTTCCTTTTCATGTTTTACTGTCATTTACATCTATATTTCTATGATTAATAAACACACTGCTTATTCTATAACAAACAAAAATTAAATAGTTTATATTGTTATTATTTGACAATGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATATACAATTAAAAGGAAAGGGCATTATGAAGAAATGGGCAAGTCCTTGTGCAATAGGCAAATATACATTTAAAAATCATAATCATAAGACTAACGAACACAATAAATAAATAATACAACGATGACATTTTCAACAATCATATTTTCTTACCACAGCTTTCAAAGTTAATGCATAAATTTTTTTAAAGAATTAAATATATTTGCCTCTCAACCG

mRNA sequence

ATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGA

Coding sequence (CDS)

ATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGA

Protein sequence

MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNSLT
Homology
[Close]
BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_004145443.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Cucumis sativus] >KGN66872.1 hypothetical protein Csa_1G701970 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 3.5e-59
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQNSLT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]
BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_008459039.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo] >XP_008459040.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo] >XP_008459041.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-58
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNNLT 150

[Close]
BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_008459037.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 4.2e-57
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ
Sbjct: 75  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 134

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN 147
           TAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQN
Sbjct: 135 TAIFSGFASLNDHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQN 194

Query: 148 SLT 151
           +LT
Sbjct: 195 NLT 197

[Close]
BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_022155216.1 (mediator of RNA polymerase II transcription subunit 22b-like [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKG+GXXXXXXXXXXXXXXXXXXX  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGVGXXXXXXXXXXXXXXXXXXXLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 121 RIGEEAATSLKELESHYYSSTQRTSQNILT 150

[Close]
BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_023545554.1 (mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545555.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545556.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 6.1e-56
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDR+LS
Sbjct: 61  SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRVLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           +IGEEAA  LKELESHYYSSTQRT QNSLT
Sbjct: 121 KIGEEAAVGLKELESHYYSSTQRTSQNSLT 150

[Close]
BLAST of CsaV3_1G046300 vs. TAIR10
Match: AT1G07950.1 (Surfeit locus protein 5 subunit 22 of Mediator complex)

HSP 1 Score: 186.8 bits (473), Expect = 9.8e-48
Identity = 94/116 (81.03%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQ
Sbjct: 34  QRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASRMVQAADSLLKLVSELKQ 93

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR 144
           TAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Sbjct: 94  TAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANLKELESHYYSSAQR 149

[Close]
BLAST of CsaV3_1G046300 vs. TAIR10
Match: AT1G16430.1 (Surfeit locus protein 5 subunit 22 of Mediator complex)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-45
Identity = 88/117 (75.21%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQ
Sbjct: 31  QRVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASRLVQAADSLLKLVSELKQ 90

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT 145
           TAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Sbjct: 91  TAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASLKELESHYYSSAQRS 147

[Close]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match: sp|Q8LCH5|MD22B_ARATH (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 94/116 (81.03%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQ
Sbjct: 34  QRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASRMVQAADSLLKLVSELKQ 93

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR 144
           TAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Sbjct: 94  TAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANLKELESHYYSSAQR 149

[Close]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match: sp|Q9SA42|MD22A_ARATH (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 88/117 (75.21%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQ
Sbjct: 31  QRVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASRLVQAADSLLKLVSELKQ 90

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT 145
           TAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Sbjct: 91  TAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASLKELESHYYSSAQRS 147

[Close]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match: sp|Q62276|MED22_MOUSE (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-15
Identity = 43/119 (36.13%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLV 87
           +R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLV
Sbjct: 20  KRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLV 79

Query: 88  SELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST 142
           S+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +E + +L ELE  YYSS+
Sbjct: 80  SDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSS 138

[Close]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match: sp|A0JPN6|MED22_RAT (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-15
Identity = 43/119 (36.13%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLV 87
           +R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLV
Sbjct: 20  KRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLV 79

Query: 88  SELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST 142
           S+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +E + +L ELE  YYSS+
Sbjct: 80  SDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLYELEEEYYSSS 138

[Close]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match: sp|Q5E9K2|MED22_BOVIN (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=MED22 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-15
Identity = 42/119 (35.29%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLV 87
           +R++ D+ +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLV
Sbjct: 20  KRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLV 79

Query: 88  SELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSST 142
           S+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +E + +L ELE  YYSS+
Sbjct: 80  SDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVSIDLYELEEEYYSSS 138

[Close]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match: tr|A0A0A0M174|A0A0A0M174_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.3e-59
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQNSLT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match: tr|A0A1S3C993|A0A1S3C993_CUCME (mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGXXXXXXXXXXXXXXXXXXXXXQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNNLT 150

[Close]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match: tr|A0A1S3CAG5|A0A1S3CAG5_CUCME (mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.8e-57
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ
Sbjct: 75  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 134

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN 147
           TAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQN
Sbjct: 135 TAIFSGFASLNDHVEQRIVEFNQQAQQTERLLSRIGEEAAANLKELESHYYSSTQRTDQN 194

Query: 148 SLT 151
           +LT
Sbjct: 195 NLT 197

[Close]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match: tr|M5W3R2|M5W3R2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G260300 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 7.4e-50
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDIANIVDNF+ LVNVSRVNDPPVRNSQE+FMMEMRAARMVQAADSLLKLVSELKQ
Sbjct: 37  QRVETDIANIVDNFSSLVNVSRVNDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQ 96

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN 147
           TAIFSGFASLNDHVEQRIVEFNQQA++TD++L+RIGEEAAA+LKELESHYYSS  RT +N
Sbjct: 97  TAIFSGFASLNDHVEQRIVEFNQQAEKTDQMLARIGEEAAASLKELESHYYSSALRTSEN 156

[Close]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match: tr|A0A1R3G7B1|A0A1R3G7B1_COCAP (Mediator complex, subunit Med22 OS=Corchorus capsularis OX=210143 GN=CCACVL1_28183 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 7.4e-50
Identity = 106/121 (87.60%), Postives = 117/121 (96.69%), Query Frame = 0 

Query: 28  QRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQ 87
           QRVETDIANIVDNFT LVNV+RVNDPPVRNSQE+FMMEMRAARMVQAADSLLKLVSELKQ
Sbjct: 28  QRVETDIANIVDNFTQLVNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQ 87

Query: 88  TAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN 147
           TAIFSGFASLNDHVEQR VEFNQQA++TDR+L+RIGEEAAA+LKELE+HYYSS QRT ++
Sbjct: 88  TAIFSGFASLNDHVEQRTVEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSAQRTGES 147

Query: 148 S 149
           +
Sbjct: 148 T 148

The following BLAST results are available for this feature:
BLAST of CsaV3_1G046300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145443.13.5e-59100.00PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Cucumis... [more]
XP_008459039.12.3e-5898.67PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform ... [more]
XP_008459037.14.2e-5798.37PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform ... [more]
XP_022155216.12.8e-5694.67mediator of RNA polymerase II transcription subunit 22b-like [Momordica charanti... [more]
XP_023545554.16.1e-5695.33mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo sub... [more]
BLAST of CsaV3_1G046300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07950.19.8e-4881.03Surfeit locus protein 5 subunit 22 of Mediator complex[more]
AT1G16430.11.6e-4575.21Surfeit locus protein 5 subunit 22 of Mediator complex[more]
BLAST of CsaV3_1G046300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LCH5|MD22B_ARATH1.8e-4681.03Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana ... [more]
sp|Q9SA42|MD22A_ARATH2.8e-4475.21Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana ... [more]
sp|Q62276|MED22_MOUSE4.7e-1536.13Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 ... [more]
sp|A0JPN6|MED22_RAT4.7e-1536.13Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=1... [more]
sp|Q5E9K2|MED22_BOVIN6.1e-1535.29Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=... [more]
BLAST of CsaV3_1G046300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M174|A0A0A0M174_CUCSA2.3e-59100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1[more]
tr|A0A1S3C993|A0A1S3C993_CUCME1.5e-5898.67mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucum... [more]
tr|A0A1S3CAG5|A0A1S3CAG5_CUCME2.8e-5798.37mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucum... [more]
tr|M5W3R2|M5W3R2_PRUPE7.4e-5089.17Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G260300 PE=4 SV=1[more]
tr|A0A1R3G7B1|A0A1R3G7B1_COCAP7.4e-5087.60Mediator complex, subunit Med22 OS=Corchorus capsularis OX=210143 GN=CCACVL1_281... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR009332Med22
IPR038427MED22_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003712 transcription cofactor activity
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G046300.1CsaV3_1G046300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038427MED22 superfamilyGENE3DG3DSA:1.20.58.1600coord: 13..142
e-value: 2.2E-28
score: 100.9
IPR009332Mediator of RNA polymerase II transcription subunit 22PFAMPF06179Med22coord: 28..127
e-value: 1.9E-28
score: 98.7
IPR009332Mediator of RNA polymerase II transcription subunit 22PANTHERPTHR12434FAMILY NOT NAMEDcoord: 9..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G046300CSPI01G34450Wild cucumber (PI 183967)cpicucB000
CsaV3_1G046300Cucsa.003880Cucumber (Gy14) v1cgycucB037
CsaV3_1G046300CsGy1G032920Cucumber (Gy14) v2cgybcucB001
CsaV3_1G046300MELO3C021751Melon (DHL92) v3.5.1cucmeB012
CsaV3_1G046300MELO3C021751.2Melon (DHL92) v3.6.1cucmedB011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G046300Silver-seed gourdcarcucB0132
CsaV3_1G046300Silver-seed gourdcarcucB1000
CsaV3_1G046300Cucurbita maxima (Rimu)cmacucB0238
CsaV3_1G046300Cucurbita maxima (Rimu)cmacucB0477
CsaV3_1G046300Cucurbita moschata (Rifu)cmocucB0225
CsaV3_1G046300Cucurbita moschata (Rifu)cmocucB0465
CsaV3_1G046300Cucurbita pepo (Zucchini)cpecucB0022
CsaV3_1G046300Cucurbita pepo (Zucchini)cpecucB0637
CsaV3_1G046300Bottle gourd (USVL1VR-Ls)cuclsiB034
CsaV3_1G046300Watermelon (Charleston Gray)cucwcgB025
CsaV3_1G046300Watermelon (97103) v1cucwmB051
CsaV3_1G046300Watermelon (97103) v2cucwmbB010
CsaV3_1G046300Wax gourdcucwgoB034