CsaV3_1G043590 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G043590
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr1 : 28571627 .. 28572939 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTTTTTACTTACATATACTACTTTTCCTTTTATCATTTCATATTATTGTTTAATGCGGTGAGGAGTCAGGACATGTGAAATTTTGCACATTCGCTCAGTGCTTTCTAAAATCCATTTCAGGAACACCCTGATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAGTTAAGCTTGCATTGCATGTAAGATTATAGTGTTTCTTGTTGATATTTATACCGATTTTTCTTAAAATCATTGGCTAGGTGAAGGAATTATCATTATTATTTTTCGCCCTCTTCTTTCTAATATGTACTTTCTTACTACATTTATTGTACAGATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGAAAGAACTCTATATCAGTAGAGGAGTGGAGAGGGGGACGGACCCTTGTGATATTTGGTTTCTTCTTGTGCTTCATTTTTAGTGTCGGTGATGAAACTTTTTGTTATTATTTGTTAGCTCTCATTATAACTTGATTGGAGTCTTT

mRNA sequence

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAG

Coding sequence (CDS)

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAG

Protein sequence

MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNHNHTESQVGISDDDAGGGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSDRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVEIEIAYRLFSHLVHASISWRGIFLGGGFVTLFDIGKRESWIMPLGVVILLNHFLELLC

Homology

[Close]

BLAST of CsaV3_1G043590 vs. NCBI nr
Match: KGN66566.1 (hypothetical protein Csa_1G629720 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 148/165 (89.70%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVE 166
           DRPTCLDQVFDVVQTMPGLDEDLILDA           + +M ++
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLD 165

[Close]

BLAST of CsaV3_1G043590 vs. NCBI nr
Match: OMO53341.1 (hypothetical protein CCACVL1_28712 [Corchorus capsularis])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 746

[Close]

BLAST of CsaV3_1G043590 vs. NCBI nr
Match: EOY32978.1 (Uncharacterized protein TCM_040985 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]

BLAST of CsaV3_1G043590 vs. NCBI nr
Match: XP_007015359.2 (PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]

BLAST of CsaV3_1G043590 vs. NCBI nr
Match: XP_017982730.1 (PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 663 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 721

[Close]

BLAST of CsaV3_1G043590 vs. TrEMBL
Match: tr|A0A0A0M2Z2|A0A0A0M2Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 148/165 (89.70%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVE 166
           DRPTCLDQVFDVVQTMPGLDEDLILDA           + +M ++
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLD 165

[Close]

BLAST of CsaV3_1G043590 vs. TrEMBL
Match: tr|A0A2N9FX33|A0A2N9FX33_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 30/58 (51.72%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD--RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR S D +++++S MAA++ RIADAL++  +  CLD++F++VQT+PG D+DLI++A
Sbjct: 693 LKRRRSSDAMLEMMSAMAADIGRIADALTENNKTVCLDELFEMVQTIPGFDDDLIIEA 750

[Close]

BLAST of CsaV3_1G043590 vs. TrEMBL
Match: tr|A0A1R3G5J3|A0A1R3G5J3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-07
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 746

[Close]

BLAST of CsaV3_1G043590 vs. TrEMBL
Match: tr|A0A061GU73|A0A061GU73_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]

BLAST of CsaV3_1G043590 vs. TrEMBL
Match: tr|A0A1R3KME8|A0A1R3KME8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S M AN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 689 LKRRRTSDLMLEMMSDMVANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 745

The following BLAST results are available for this feature:

BLAST of CsaV3_1G043590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66566.1	1.9e-45	89.70	hypothetical protein Csa_1G629720 [Cucumis sativus]	[more]
OMO53341.1	6.0e-07	54.39	hypothetical protein CCACVL1_28712 [Corchorus capsularis]	[more]
EOY32978.1	1.3e-06	49.15	Uncharacterized protein TCM_040985 [Theobroma cacao]	[more]
XP_007015359.2	1.3e-06	49.15	PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao]	[more]
XP_017982730.1	1.3e-06	49.15	PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao]	[more]

BLAST of CsaV3_1G043590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M2Z2\|A0A0A0M2Z2_CUCSA	1.3e-45	89.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1	[more]
tr\|A0A2N9FX33\|A0A2N9FX33_FAGSY	2.3e-07	51.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1	[more]
tr\|A0A1R3G5J3\|A0A1R3G5J3_COCAP	3.9e-07	54.39	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 ...	[more]
tr\|A0A061GU73\|A0A061GU73_THECC	8.8e-07	49.15	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1	[more]
tr\|A0A1R3KME8\|A0A1R3KME8_9ROSI	1.1e-06	52.63	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G043590.1	CsaV3_1G043590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G043590	CSPI01G31210	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G043590	CsGy1G030400	Cucumber (Gy14) v2	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G043590	Watermelon (97103) v2	cucwmbB041
CsaV3_1G043590	Wax gourd	cucwgoB105
CsaV3_1G043590	Silver-seed gourd	carcucB0928
CsaV3_1G043590	Silver-seed gourd	carcucB1010
CsaV3_1G043590	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G043590	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G043590	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G043590	Cucurbita maxima (Rimu)	cmacucB0691
CsaV3_1G043590	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G043590	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G043590	Cucurbita moschata (Rifu)	cmocucB0676
CsaV3_1G043590	Cucurbita pepo (Zucchini)	cpecucB0428
CsaV3_1G043590	Cucurbita pepo (Zucchini)	cpecucB0813
CsaV3_1G043590	Cucurbita pepo (Zucchini)	cpecucB0877
CsaV3_1G043590	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G043590	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G043590	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G043590	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G043590	Watermelon (97103) v1	cucwmB027