CSPI01G31210 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G31210
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Myb/SANT-like DNA-binding domain protein
Location	Chr1 : 25726714 .. 25727749 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTGTACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGATCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAGTTAAGCTTGCATTGCATGTAAGATTATAGTGTTTCTTGTTGATATTTATACCGATTTTTCTTAAAATCATTGGCTAGGTGAAGGAATTATCATTATTATTTTTCGCCCTCTTCTTTCTAATATGTACTTTCTTACTACATTTATTGTACAGATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGGGGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGA

mRNA sequence

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTGTACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGATCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGGGGAAATTGAGATTGCTTACAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGA

Coding sequence (CDS)

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTGTACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGATCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGGGGAAATTGAGATTGCTTACAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGA

Homology

[Close]

BLAST of CSPI01G31210 vs. TrEMBL
Match: A0A0A0M2Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629720 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.5e-72
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1


Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDCTLNNHNHTESQVGISDDDAG 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKD TLNNHNHTESQVGISDDDAG
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNHNHTESQVGISDDDAG 60

Query: 61  GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDA 148
           DRPTCLDQVFDVVQTMPGLDEDLILDA
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDA 147

[Close]

BLAST of CSPI01G31210 vs. TrEMBL
Match: A0A0B2R3F2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024003 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 12  ITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTES------QVGISDDDAGGGN 71
           I NY EL MI  +++ +  WS   E+ D + T N   H E+       V IS D      
Sbjct: 590 IENYHELGMIVGDEQGSGNWSENFERFDVNLTPNYEEHAEAPALVLADVQISPD------ 649

Query: 72  GSSGSDSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD- 131
            ++ SD  + SS+QT  RPSSS SHS++  KRR + D++++++SVMAA+++RIADALS+ 
Sbjct: 650 -ANASDEVQGSSEQTRARPSSSQSHSKQPSKRRRTSDVMLEMMSVMAADISRIADALSEN 709

Query: 132 -RPTCLDQVFDVVQTMPGLDEDLILDA 148
            +  CL++V + VQ MP  D+DLI++A
Sbjct: 710 NKTVCLEEVVEKVQNMPDFDDDLIIEA 729

[Close]

BLAST of CSPI01G31210 vs. TrEMBL
Match: A0A0R0J796_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 12  ITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTES------QVGISDDDAGGGN 71
           I NY EL MI  +++ +  WS   E+ D + T N   H E+       V IS D      
Sbjct: 618 IENYHELGMIVGDEQGSGNWSENFERFDVNLTPNYEEHAEAPALVLADVQISPD------ 677

Query: 72  GSSGSDSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD- 131
            ++ SD  + SS+QT  RPSSS SHS++  KRR + D++++++SVMAA+++RIADALS+ 
Sbjct: 678 -ANASDEVQGSSEQTRARPSSSQSHSKQPSKRRRTSDVMLEMMSVMAADISRIADALSEN 737

Query: 132 -RPTCLDQVFDVVQTMPGLDEDLILDA 148
            +  CL++V + VQ MP  D+DLI++A
Sbjct: 738 NKTVCLEEVVEKVQNMPDFDDDLIIEA 757

[Close]

BLAST of CSPI01G31210 vs. TrEMBL
Match: A0A0R0J7D0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 12  ITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTES------QVGISDDDAGGGN 71
           I NY EL MI  +++ +  WS   E+ D + T N   H E+       V IS D      
Sbjct: 644 IENYHELGMIVGDEQGSGNWSENFERFDVNLTPNYEEHAEAPALVLADVQISPD------ 703

Query: 72  GSSGSDSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD- 131
            ++ SD  + SS+QT  RPSSS SHS++  KRR + D++++++SVMAA+++RIADALS+ 
Sbjct: 704 -ANASDEVQGSSEQTRARPSSSQSHSKQPSKRRRTSDVMLEMMSVMAADISRIADALSEN 763

Query: 132 -RPTCLDQVFDVVQTMPGLDEDLILDA 148
            +  CL++V + VQ MP  D+DLI++A
Sbjct: 764 NKTVCLEEVVEKVQNMPDFDDDLIIEA 783

[Close]

BLAST of CSPI01G31210 vs. TrEMBL
Match: K7L3H0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 12  ITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTES------QVGISDDDAGGGN 71
           I NY EL MI  +++ +  WS   E+ D + T N   H E+       V IS D      
Sbjct: 670 IENYHELGMIVGDEQGSGNWSENFERFDVNLTPNYEEHAEAPALVLADVQISPD------ 729

Query: 72  GSSGSDSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD- 131
            ++ SD  + SS+QT  RPSSS SHS++  KRR + D++++++SVMAA+++RIADALS+ 
Sbjct: 730 -ANASDEVQGSSEQTRARPSSSQSHSKQPSKRRRTSDVMLEMMSVMAADISRIADALSEN 789

Query: 132 -RPTCLDQVFDVVQTMPGLDEDLILDA 148
            +  CL++V + VQ MP  D+DLI++A
Sbjct: 790 NKTVCLEEVVEKVQNMPDFDDDLIIEA 809

[Close]

BLAST of CSPI01G31210 vs. NCBI nr
Match: gi|700211470|gb|KGN66566.1| (hypothetical protein Csa_1G629720 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 2.2e-72
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1


Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDCTLNNHNHTESQVGISDDDAG 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKD TLNNHNHTESQVGISDDDAG
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNHNHTESQVGISDDDAG 60

Query: 61  GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  GGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDA 148
           DRPTCLDQVFDVVQTMPGLDEDLILDA
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDA 147

[Close]

BLAST of CSPI01G31210 vs. NCBI nr
Match: gi|951013256|ref|XP_014510265.1| (PREDICTED: uncharacterized protein LOC106769245 isoform X3 [Vigna radiata var. radiata])

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 1


Query: 11  RITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTESQVGISDDDAGGGNGSSGS 70
           RI NY ELCMI  N++    WS   E+ D + T N   H E+   +  + A   +    S
Sbjct: 637 RIANYHELCMIVGNEQGIGNWSENSERFDVNITPNYEEHAETPALVLPN-AELSHDDDAS 696

Query: 71  DSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD--RPTC 130
           D  + SS+QT  RPSSS SHS +  KRR + D+++Q++SVMAA+++RIADAL++     C
Sbjct: 697 DEVQGSSEQTRARPSSSQSHSEQPSKRRRTCDVLLQMMSVMAADISRIADALTETNNRVC 756

Query: 131 LDQVFDVVQTMPGLDEDLILDA 148
           L++V + VQ MP  D+DLI++A
Sbjct: 757 LEEVVEKVQNMPDFDDDLIIEA 777

[Close]

BLAST of CSPI01G31210 vs. NCBI nr
Match: gi|951013251|ref|XP_014510264.1| (PREDICTED: uncharacterized protein LOC106769245 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 1


Query: 11  RITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTESQVGISDDDAGGGNGSSGS 70
           RI NY ELCMI  N++    WS   E+ D + T N   H E+   +  + A   +    S
Sbjct: 640 RIANYHELCMIVGNEQGIGNWSENSERFDVNITPNYEEHAETPALVLPN-AELSHDDDAS 699

Query: 71  DSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD--RPTC 130
           D  + SS+QT  RPSSS SHS +  KRR + D+++Q++SVMAA+++RIADAL++     C
Sbjct: 700 DEVQGSSEQTRARPSSSQSHSEQPSKRRRTCDVLLQMMSVMAADISRIADALTETNNRVC 759

Query: 131 LDQVFDVVQTMPGLDEDLILDA 148
           L++V + VQ MP  D+DLI++A
Sbjct: 760 LEEVVEKVQNMPDFDDDLIIEA 780

[Close]

BLAST of CSPI01G31210 vs. NCBI nr
Match: gi|951013243|ref|XP_014510263.1| (PREDICTED: uncharacterized protein LOC106769245 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 1


Query: 11  RITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTESQVGISDDDAGGGNGSSGS 70
           RI NY ELCMI  N++    WS   E+ D + T N   H E+   +  + A   +    S
Sbjct: 666 RIANYHELCMIVGNEQGIGNWSENSERFDVNITPNYEEHAETPALVLPN-AELSHDDDAS 725

Query: 71  DSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD--RPTC 130
           D  + SS+QT  RPSSS SHS +  KRR + D+++Q++SVMAA+++RIADAL++     C
Sbjct: 726 DEVQGSSEQTRARPSSSQSHSEQPSKRRRTCDVLLQMMSVMAADISRIADALTETNNRVC 785

Query: 131 LDQVFDVVQTMPGLDEDLILDA 148
           L++V + VQ MP  D+DLI++A
Sbjct: 786 LEEVVEKVQNMPDFDDDLIIEA 806

[Close]

BLAST of CSPI01G31210 vs. NCBI nr
Match: gi|571467582|ref|XP_006583986.1| (PREDICTED: uncharacterized protein LOC100785875 isoform X3 [Glycine max])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1


Query: 12  ITNY-ELCMIFDNKEKTEGWSI-VEKHDKDCTLNNHNHTES------QVGISDDDAGGGN 71
           I NY EL MI  +++ +  WS   E+ D + T N   H E+       V IS D      
Sbjct: 628 IENYHELGMIVGDEQGSGNWSENFERFDVNLTPNYEEHAEAPALVLADVQISPD------ 687

Query: 72  GSSGSDSTEASSQQTGTRPSSS-SHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSD- 131
            ++ SD  + SS+QT  RPSSS SHS++  KRR + D++++++SVMAA+++RIADALS+ 
Sbjct: 688 -ANASDEVQGSSEQTRARPSSSQSHSKQPSKRRRTSDVMLEMMSVMAADISRIADALSEN 747

Query: 132 -RPTCLDQVFDVVQTMPGLDEDLILDA 148
            +  CL++V + VQ MP  D+DLI++A
Sbjct: 748 NKTVCLEEVVEKVQNMPDFDDDLIIEA 767

The following BLAST results are available for this feature:

BLAST of CSPI01G31210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G31210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2Z2_CUCSA	1.5e-72	99.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629720 PE=4 SV=1	[more]
A0A0B2R3F2_GLYSO	1.0e-12	41.50	Uncharacterized protein OS=Glycine soja GN=glysoja_024003 PE=4 SV=1	[more]
A0A0R0J796_SOYBN	1.0e-12	41.50	Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1	[more]
A0A0R0J7D0_SOYBN	1.0e-12	41.50	Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1	[more]
K7L3H0_SOYBN	1.0e-12	41.50	Uncharacterized protein OS=Glycine max GN=GLYMA_07G234900 PE=4 SV=1	[more]

BLAST of CSPI01G31210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G31210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211470\|gb\|KGN66566.1\|	2.2e-72	99.32	hypothetical protein Csa_1G629720 [Cucumis sativus]	[more]
gi\|951013256\|ref\|XP_014510265.1\|	3.0e-13	42.96	PREDICTED: uncharacterized protein LOC106769245 isoform X3 [Vigna radiata var. r...	[more]
gi\|951013251\|ref\|XP_014510264.1\|	3.0e-13	42.96	PREDICTED: uncharacterized protein LOC106769245 isoform X2 [Vigna radiata var. r...	[more]
gi\|951013243\|ref\|XP_014510263.1\|	3.0e-13	42.96	PREDICTED: uncharacterized protein LOC106769245 isoform X1 [Vigna radiata var. r...	[more]
gi\|571467582\|ref\|XP_006583986.1\|	1.5e-12	41.50	PREDICTED: uncharacterized protein LOC100785875 isoform X3 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G31210.1	CSPI01G31210.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G31210	Csa1G629720	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G31210	CsaV3_1G043590	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G31210	CsGy1G030400	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G31210	Cucurbita pepo (Zucchini)	cpecpiB350
CSPI01G31210	Cucurbita pepo (Zucchini)	cpecpiB655
CSPI01G31210	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G31210	Melon (DHL92) v3.6.1	cpimedB036
CSPI01G31210	Silver-seed gourd	carcpiB0925
CSPI01G31210	Silver-seed gourd	carcpiB1005
CSPI01G31210	Watermelon (97103) v2	cpiwmbB043
CSPI01G31210	Wax gourd	cpiwgoB100
CSPI01G31210	Cucumber (Gy14) v1	cgycpiB528
CSPI01G31210	Cucurbita maxima (Rimu)	cmacpiB084
CSPI01G31210	Cucurbita maxima (Rimu)	cmacpiB058
CSPI01G31210	Cucurbita moschata (Rifu)	cmocpiB050
CSPI01G31210	Cucurbita moschata (Rifu)	cmocpiB078
CSPI01G31210	Melon (DHL92) v3.5.1	cpimeB042
CSPI01G31210	Watermelon (Charleston Gray)	cpiwcgB049
CSPI01G31210	Watermelon (97103) v1	cpiwmB024