CsGy1G030400 (gene) Cucumber (Gy14) v2

NameCsGy1G030400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMyb/SANT-like DNA-binding domain protein
LocationChr1 : 28671558 .. 28672762 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACACCCTGATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAGTTAAGCTTGCATTGCATGTAAGATTATAGTGTTTCTTGTTGATATTTATACCGATTTTTCTTAAAATCATTGGCTAGGTGAAGGAATTATCATTATTATTTTTCGCCCTCTTCTTTCTAATATGTACTTTCTTACTACATTTATTGTACAGATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGAAAGAACTCTATATCAGTAGAGGAGTGGAGAGGGGGACGGACCCTTGTGATATTTGGTTTCTTCTTGTGCTTCATTTTTAGTGTCGGTGATGAAACTTTTTGTTATTATTTGTTAGCTCTCATTATAACTTGATTGGAGTCTTTTCTTTTGTTCGATTTA

mRNA sequence

GAACACCCTGATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGAAAGAACTCTATATCAGTAGAGGAGTGGAGAGGGGGACGGACCCTTGTGATATTTGGTTTCTTCTTGTGCTTCATTTTTAGTGTCGGTGATGAAACTTTTTGTTATTATTTGTTAGCTCTCATTATAACTTGATTGGAGTCTTTTCTTTTGTTCGATTTA

Coding sequence (CDS)

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAG

Protein sequence

MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNHNHTESQVGISDDDAGGGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSDRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLRNRLAWLQTGHLIGYMRVEIEIAYRLFSHLVHASISWRGIFLGGGFVTLFDIGKRESWIMPLGVVILLNHFLELLC
BLAST of CsGy1G030400 vs. NCBI nr
Match: KGN66566.1 (hypothetical protein Csa_1G629720 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 1.3e-63
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0

Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLRN 180
           DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLR+
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLRS 179

BLAST of CsGy1G030400 vs. NCBI nr
Match: OMO53341.1 (hypothetical protein CCACVL1_28712 [Corchorus capsularis])

HSP 1 Score: 117.5 bits (293), Expect = 6.7e-23
Identity = 58/88 (65.91%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDACEF 151
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DACE+
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDACEY 749

Query: 152 LSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           LSFDEKRA MFM LDERLRKKWLLK+LR
Sbjct: 750 LSFDEKRARMFMKLDERLRKKWLLKRLR 777

BLAST of CsGy1G030400 vs. NCBI nr
Match: EOY32978.1 (Uncharacterized protein TCM_040985 [Theobroma cacao])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 55/90 (61.11%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDAC 149
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DAC
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDAC 747

Query: 150 EFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           E+LSFDEKRA+MF+ LDERLRKKWLLK+LR
Sbjct: 748 EYLSFDEKRAMMFVKLDERLRKKWLLKRLR 777

BLAST of CsGy1G030400 vs. NCBI nr
Match: XP_007015359.2 (PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 55/90 (61.11%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDAC 149
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DAC
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDAC 747

Query: 150 EFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           E+LSFDEKRA+MF+ LDERLRKKWLLK+LR
Sbjct: 748 EYLSFDEKRAMMFVKLDERLRKKWLLKRLR 777

BLAST of CsGy1G030400 vs. NCBI nr
Match: XP_017982730.1 (PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 55/90 (61.11%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDAC 149
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DAC
Sbjct: 663 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDAC 722

Query: 150 EFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           E+LSFDEKRA+MF+ LDERLRKKWLLK+LR
Sbjct: 723 EYLSFDEKRAMMFVKLDERLRKKWLLKRLR 752

BLAST of CsGy1G030400 vs. TAIR10
Match: AT4G02210.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-08
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 126 LDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           ++   + +Q +P +D++LILDAC+ L  D+ +A  F+ LD +LRKKWLL+KLR
Sbjct: 384 IEDTVEAIQALPDMDDELILDACDLLE-DKLKAKTFLALDVKLRKKWLLRKLR 435

BLAST of CsGy1G030400 vs. TAIR10
Match: AT2G24960.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 126 LDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           +    D +Q +P +D++L+LDAC+ L  DE++A  F+ LD  LR+KWL++KLR
Sbjct: 741 IGNALDALQALPDMDDELLLDACDLLE-DERKAKTFLALDVSLRRKWLVRKLR 792

BLAST of CsGy1G030400 vs. TrEMBL
Match: tr|A0A0A0M2Z2|A0A0A0M2Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.9e-64
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0

Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLRN 180
           DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLR+
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLDERLRKKWLLKKLRS 179

BLAST of CsGy1G030400 vs. TrEMBL
Match: tr|A0A1R3G5J3|A0A1R3G5J3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23
Identity = 58/88 (65.91%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDACEF 151
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DACE+
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDACEY 749

Query: 152 LSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           LSFDEKRA MFM LDERLRKKWLLK+LR
Sbjct: 750 LSFDEKRARMFMKLDERLRKKWLLKRLR 777

BLAST of CsGy1G030400 vs. TrEMBL
Match: tr|A0A2N9FX33|A0A2N9FX33_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.8e-23
Identity = 55/91 (60.44%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD--RPTCLDQVFDVVQTMPGLDEDLILDACE 151
           LKRR S D +++++S MAA++ RIADAL++  +  CLD++F++VQT+PG D+DLI++ACE
Sbjct: 693 LKRRRSSDAMLEMMSAMAADIGRIADALTENNKTVCLDELFEMVQTIPGFDDDLIIEACE 752

Query: 152 FLSFDEKRAVMFMNLDERLRKKWLLKKLRNR 181
           +LSFDE+RA+MFM L+ERLRKKWLLK+LR +
Sbjct: 753 YLSFDERRAMMFMKLNERLRKKWLLKRLRGQ 783

BLAST of CsGy1G030400 vs. TrEMBL
Match: tr|A0A061GU73|A0A061GU73_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 55/90 (61.11%), Postives = 79/90 (87.78%), Query Frame = 0

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDAC 149
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DAC
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDAC 747

Query: 150 EFLSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           E+LSFDEKRA+MF+ LDERLRKKWLLK+LR
Sbjct: 748 EYLSFDEKRAMMFVKLDERLRKKWLLKRLR 777

BLAST of CsGy1G030400 vs. TrEMBL
Match: tr|A0A1R3KME8|A0A1R3KME8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 0

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDACEF 151
           LKRR + DL+++++S M AN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DACE+
Sbjct: 689 LKRRRTSDLMLEMMSDMVANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDACEY 748

Query: 152 LSFDEKRAVMFMNLDERLRKKWLLKKLR 179
           LSFDEKRA MFM LDERLRKKWLLK+LR
Sbjct: 749 LSFDEKRARMFMKLDERLRKKWLLKRLR 776

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN66566.11.3e-6399.44hypothetical protein Csa_1G629720 [Cucumis sativus][more]
OMO53341.16.7e-2365.91hypothetical protein CCACVL1_28712 [Corchorus capsularis][more]
EOY32978.12.0e-2261.11Uncharacterized protein TCM_040985 [Theobroma cacao][more]
XP_007015359.22.0e-2261.11PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao][more]
XP_017982730.12.0e-2261.11PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
AT4G02210.17.4e-0847.17unknown protein[more]
AT2G24960.11.7e-0745.28unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0M2Z2|A0A0A0M2Z2_CUCSA8.9e-6499.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1[more]
tr|A0A1R3G5J3|A0A1R3G5J3_COCAP4.4e-2365.91Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 ... [more]
tr|A0A2N9FX33|A0A2N9FX33_FAGSY5.8e-2360.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1[more]
tr|A0A061GU73|A0A061GU73_THECC1.3e-2261.11Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1[more]
tr|A0A1R3KME8|A0A1R3KME8_9ROSI1.3e-2264.77Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G030400.1CsGy1G030400.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86
NoneNo IPR availablePANTHERPTHR31704:SF5SUBFAMILY NOT NAMEDcoord: 67..179
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 67..179