CsaV3_1G043590.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G043590.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr1 : 28571627 .. 28572939 (+)
Sequence length669
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTTTTTACTTACATATACTACTTTTCCTTTTATCATTTCATATTATTGTTTAATGCGGTGAGGAGTCAGGACATGTGAAATTTTGCACATTCGCTCAGTGCTTTCTAAAATCCATTTCAGGAACACCCTGATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATGTGAGTTTCTCTCTTTTGATGAAAAAAGGGCTGTGATGTTTATGAACTTGGATGAGAGGTTGAGAAAAAAGTGGCTACTAAAAAAGTTGCGCAGTTAAGCTTGCATTGCATGTAAGATTATAGTGTTTCTTGTTGATATTTATACCGATTTTTCTTAAAATCATTGGCTAGGTGAAGGAATTATCATTATTATTTTTCGCCCTCTTCTTTCTAATATGTACTTTCTTACTACATTTATTGTACAGATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAGATGTTGCTAGAGGCAAGGAGTATAGGACGATAATGAAGGAGTTGCTTCTGTATCAGTGGTTGAGGGAGATTTTTGTGACAAGTAGTGCACGTACAATTTGTAGGGTCTGGAAGGGTGGTTGAAAGAACTCTATATCAGTAGAGGAGTGGAGAGGGGGACGGACCCTTGTGATATTTGGTTTCTTCTTGTGCTTCATTTTTAGTGTCGGTGATGAAACTTTTTGTTATTATTTGTTAGCTCTCATTATAACTTGATTGGAGTCTTT

mRNA sequence

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAG

Coding sequence (CDS)

ATGTGCGGGAATTCCAAGCCAAGTCAATTGAGAATTACAAATTATGAGCTGTGTATGATTTTTGATAACAAGGAGAAAACTGAAGGATGGTCAATAGTTGAAAAACACGATAAGGACTATACTTTGAACAACCACAACCATACAGAATCCCAAGTAGGGATATCAGATGATGATGCAGGGGGAGGTAATGGTTCCAGTGGTTCTGATAGCACGGAGGCTTCATCTCAACAAACAGGAACTAGACCATCCTCCTCTTCACATTCACGAAAGTCTTTAAAGAGAAGATGCAGCGATGATCTCATTGTGCAAATAGTGAGTGTCATGGCTGCTAACGTTGCTCGAATAGCTGATGCATTGTCAGACAGGCCAACTTGCTTAGACCAAGTGTTTGATGTTGTTCAAACCATGCCTGGGTTGGACGAGGATCTGATCCTCGACGCATATAGACTGGCTTGGCTGCAGACCGGTCATTTGATTGGATATATGAGAGTTGAAATTGAGATTGCTTACAGGTTGTTTTCTCACTTGGTCCATGCTTCCATAAGTTGGAGAGGGATCTTTTTGGGAGGGGGGTTTGTCACATTATTTGATATAGGAAAGAGAGAGTCTTGGATCATGCCCTTGGGAGTTGTTATTTTGCTCAATCATTTCTTGGAGCTACTTTGTTAG

Protein sequence

MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNHNHTESQVGISDDDAGGGNGSSGSDSTEASSQQTGTRPSSSSHSRKSLKRRCSDDLIVQIVSVMAANVARIADALSDRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVEIEIAYRLFSHLVHASISWRGIFLGGGFVTLFDIGKRESWIMPLGVVILLNHFLELLC
Homology
[Close]
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match: KGN66566.1 (hypothetical protein Csa_1G629720 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 148/165 (89.70%), Postives = 152/165 (92.12%), Query Frame = 0 

Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVE 166
           DRPTCLDQVFDVVQTMPGLDEDLILDA           + +M ++
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLD 165

[Close]
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match: OMO53341.1 (hypothetical protein CCACVL1_28712 [Corchorus capsularis])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 746

[Close]
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match: EOY32978.1 (Uncharacterized protein TCM_040985 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match: XP_007015359.2 (PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match: XP_017982730.1 (PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 663 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 721

[Close]
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match: tr|A0A0A0M2Z2|A0A0A0M2Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 148/165 (89.70%), Postives = 152/165 (92.12%), Query Frame = 0 

Query: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60
           MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX
Sbjct: 1   MCGNSKPSQLRITNYELCMIFDNKEKTEGWSIVEKHDKDYTLNNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLKRRCSDDLIVQIVSVMAANVARIADALS 120

Query: 121 DRPTCLDQVFDVVQTMPGLDEDLILDAYRLAWLQTGHLIGYMRVE 166
           DRPTCLDQVFDVVQTMPGLDEDLILDA           + +M ++
Sbjct: 121 DRPTCLDQVFDVVQTMPGLDEDLILDACEFLSFDEKRAVMFMNLD 165

[Close]
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match: tr|A0A2N9FX33|A0A2N9FX33_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 30/58 (51.72%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD--RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR S D +++++S MAA++ RIADAL++  +  CLD++F++VQT+PG D+DLI++A
Sbjct: 693 LKRRRSSDAMLEMMSAMAADIGRIADALTENNKTVCLDELFEMVQTIPGFDDDLIIEA 750

[Close]
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match: tr|A0A1R3G5J3|A0A1R3G5J3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-07
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S MAAN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 690 LKRRRTSDLMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 746

[Close]
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match: tr|A0A061GU73|A0A061GU73_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 29/59 (49.15%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 90  KSLKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           ++LKRR + D++++++S MAAN+ RIADAL++ +  CLD++F +VQ++P  D+DLI+DA
Sbjct: 688 EALKRRRTSDVMLEMMSDMAANIGRIADALTESKAVCLDELFQMVQSIPEFDDDLIIDA 746

[Close]
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match: tr|A0A1R3KME8|A0A1R3KME8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 92  LKRRCSDDLIVQIVSVMAANVARIADALSD-RPTCLDQVFDVVQTMPGLDEDLILDA 148
           LKRR + DL+++++S M AN+ RIADAL++ +  CLD++F +VQT+P  D+DLI+DA
Sbjct: 689 LKRRRTSDLMLEMMSDMVANIGRIADALTESKAVCLDELFQMVQTIPEFDDDLIVDA 745

The following BLAST results are available for this feature:
BLAST of CsaV3_1G043590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66566.11.9e-4589.70hypothetical protein Csa_1G629720 [Cucumis sativus][more]
OMO53341.16.0e-0754.39hypothetical protein CCACVL1_28712 [Corchorus capsularis][more]
EOY32978.11.3e-0649.15Uncharacterized protein TCM_040985 [Theobroma cacao][more]
XP_007015359.21.3e-0649.15PREDICTED: uncharacterized protein LOC18590030 isoform X1 [Theobroma cacao][more]
XP_017982730.11.3e-0649.15PREDICTED: uncharacterized protein LOC18590030 isoform X2 [Theobroma cacao][more]
BLAST of CsaV3_1G043590.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G043590.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G043590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M2Z2|A0A0A0M2Z2_CUCSA1.3e-4589.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629720 PE=4 SV=1[more]
tr|A0A2N9FX33|A0A2N9FX33_FAGSY2.3e-0751.72Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1[more]
tr|A0A1R3G5J3|A0A1R3G5J3_COCAP3.9e-0754.39Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28712 PE=4 ... [more]
tr|A0A061GU73|A0A061GU73_THECC8.8e-0749.15Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040985 PE=4 SV=1[more]
tr|A0A1R3KME8|A0A1R3KME8_9ROSI1.1e-0652.63Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06628 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G043590CsaV3_1G043590gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G043590.1.exon1CsaV3_1G043590.1.exon1exon
CsaV3_1G043590.1.exon2CsaV3_1G043590.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G043590.1.cds1CsaV3_1G043590.1.cds1CDS
CsaV3_1G043590.1.cds2CsaV3_1G043590.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G043590.1CsaV3_1G043590.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86