CsaV3_1G032100 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G032100
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 19099504 .. 19100195 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTCCCTTTCTCTCCCTCTCTCATTTTCTCGATTCCTTTTGCCTTATAATTTTTAATTTTCATTCCCTCTTTAATTTCTTCCTTCACAGGTCACTTTTCAACTATAAATTCTCCATTCTCTTCTTCTTTTTTGTTTTGTTTTGTTTTGTTTTAAAACTATAAATCTCATATATCATCTTTTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATCATCATTTCCAAATCATCAATTTTTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAAGTAGAGAGGAAAAAGAACAAGTGATCAAGATCAAGATCAAAGTCAATAATATATAATATTATAGTTTATGCTGATCTTGATTATTATCATGCATGATTATGA

mRNA sequence

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Protein sequence

MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN

Homology

[Close]

BLAST of CsaV3_1G032100 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_1G433060 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of CsaV3_1G032100 vs. TrEMBL
Match: tr|A0A0A0LXI1|A0A0A0LXI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-45
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

The following BLAST results are available for this feature:

BLAST of CsaV3_1G032100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65507.1	1.4e-44	100.00	hypothetical protein Csa_1G433060 [Cucumis sativus]	[more]

BLAST of CsaV3_1G032100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G032100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G032100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXI1\|A0A0A0LXI1_CUCSA	9.0e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G032100.1	CsaV3_1G032100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G032100	CSPI01G20780	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G032100	CmaCh11G003450	Cucurbita maxima (Rimu)	cmacucB0113
CsaV3_1G032100	CmoCh11G003470	Cucurbita moschata (Rifu)	cmocucB0101
CsaV3_1G032100	Cp4.1LG04g13440	Cucurbita pepo (Zucchini)	cpecucB0797
CsaV3_1G032100	CsGy1G020560	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G032100	Cla018881	Watermelon (97103) v1	cucwmB092
CsaV3_1G032100	MELO3C017406	Melon (DHL92) v3.5.1	cucmeB043
CsaV3_1G032100	ClCG06G013900	Watermelon (Charleston Gray)	cucwcgB075
CsaV3_1G032100	Lsi06G012300	Bottle gourd (USVL1VR-Ls)	cuclsiB069
CsaV3_1G032100	MELO3C017406.2	Melon (DHL92) v3.6.1	cucmedB040
CsaV3_1G032100	Cla97C06G123340	Watermelon (97103) v2	cucwmbB064
CsaV3_1G032100	Bhi02G000148	Wax gourd	cucwgoB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G032100	Silver-seed gourd	carcucB0626
CsaV3_1G032100	Silver-seed gourd	carcucB0826
CsaV3_1G032100	Cucumber (Gy14) v1	cgycucB432
CsaV3_1G032100	Cucurbita maxima (Rimu)	cmacucB0068
CsaV3_1G032100	Cucurbita moschata (Rifu)	cmocucB0055
CsaV3_1G032100	Cucurbita pepo (Zucchini)	cpecucB0430