Bhi02G000148 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G000148
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Clavata3/ESR (CLE) gene family member
Location	chr2 : 4199494 .. 4200292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCATTAGTTAATGTTCTTCACACTCTCTTCTACTCCTTCCCTCTTCTTCCCTTTTCTCTCTCACTTCCTCAATTCCTTTTGCCTTTTCCTTCTCTCTTTCTCCCTTCACAAGTTACTTTTCAACTATAAATTCTCCATTCTCTTGTTTTTTTTGTTTTTGTTTTCTACTCCCCCTTAAGTGAGAAGAGCTATTTTCCAACACAGTATATTCTCATCAATCCTTTTTGATTTTGTGGGTCTTCACCCTTTCACATGATCATCATTTCTAAATCATCAATTTTCATTTTTGAAAATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGCCTTTCGTTTTTAGTCGTTTGCGTTAGCTCCGTCGCGGAAGCTCGGAAGATGTTGTTTTTGGCTTACGACAGTGTCAGAGACGACAAAAACAGCTTGACAACTGCACTGGAGACAAACAATAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTATGAAGATGATGATCGATAATAATGTCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAGAGAAAAAAGAAATGAAGATCAGAGATAATAGTTATTAGTATAGTTTATGCTCTTGATCATCATGATTATGATAATGTTTTTGTTTTTGTTTTAATGTCTTCTTAAGCTTTTGTCTTGGTAAATTTTCATGAGGTTGTTCTTTCTTCTGTTGATATTAATCTAATTTTTGTTCATTTTAATGTAAGTGAAATCAAG

mRNA sequence

AATTCATTAGTTAATGTTCTTCACACTCTCTTCTACTCCTTCCCTCTTCTTCCCTTTTCTCTCTCACTTCCTCAATTCCTTTTGCCTTTTCCTTCTCTCTTTCTCCCTTCACAAGTTACTTTTCAACTATAAATTCTCCATTCTCTTGTTTTTTTTGTTTTTGTTTTCTACTCCCCCTTAAGTGAGAAGAGCTATTTTCCAACACAGTATATTCTCATCAATCCTTTTTGATTTTGTGGGTCTTCACCCTTTCACATGATCATCATTTCTAAATCATCAATTTTCATTTTTGAAAATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGCCTTTCGTTTTTAGTCGTTTGCGTTAGCTCCGTCGCGGAAGCTCGGAAGATGTTGTTTTTGGCTTACGACAGTGTCAGAGACGACAAAAACAGCTTGACAACTGCACTGGAGACAAACAATAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTATGAAGATGATGATCGATAATAATGTCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAGAGAAAAAAGAAATGAAGATCAGAGATAATAGTTATTAGTATAGTTTATGCTCTTGATCATCATGATTATGATAATGTTTTTGTTTTTGTTTTAATGTCTTCTTAAGCTTTTGTCTTGGTAAATTTTCATGAGGTTGTTCTTTCTTCTGTTGATATTAATCTAATTTTTGTTCATTTTAATGTAAGTGAAATCAAG

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTAGCTAAGTCTAGCATTTTGGTGCTTTGCCTTTCGTTTTTAGTCGTTTGCGTTAGCTCCGTCGCGGAAGCTCGGAAGATGTTGTTTTTGGCTTACGACAGTGTCAGAGACGACAAAAACAGCTTGACAACTGCACTGGAGACAAACAATAGGTGCAAGTACTTGAAGAACATCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTATGAAGATGATGATCGATAATAATGTCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MSGAMGLAKSSILVLCLSFLVVCVSSVAEARKMLFLAYDSVRDDKNSLTTALETNNRCKYLKNIHCCECFFLSSMKMMIDNNVTNFEEKRVVPTGPNPLHNK

Homology

[Close]

BLAST of Bhi02G000148 vs. TrEMBL
Match: tr|A0A0A0LXI1|A0A0A0LXI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 69/110 (62.73%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MSGAMGLAKSSILVLCLSFLVVCVSSVAEARKMLFLAYDSVRDDKNSLTTAL--ETNNRC 60
           MSGAMGL+KSSIL+  LS LVVCV+SVA ARK LFL ++ VRD+KNSLTT L   T NRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYLKN-----IHCCECF--FLSSMKMMIDNNVTNFEEKRVVPTGPNPLHN 102
           KY KN     +HCCECF                NFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Bhi02G000148 vs. TrEMBL
Match: tr|V7CBF3|V7CBF3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G137800g PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 29/95 (30.53%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 10  SSILVLCLSFLVVCVSSVAEARKMLFLA--YDSVRDDKNSLTTALETNNRCKYLKNIHCC 69
           + ++++C   L  C++S   ARK +F++  +D  +   N++ +A ++ ++C   +++ C 
Sbjct: 4   AELILVCFLLLWACIASNTVARKTVFVSNFFDGAKKKTNTMLSA-DSAHKCNRKRHLSC- 63

Query: 70  ECFFLSSMKMMIDNNVTNFEEKRVVPTGPNPLHNK 103
                        NN T+ E+KR+VPTGPNPLHN+
Sbjct: 64  -----------YHNNTTSLEDKRLVPTGPNPLHNR 85

[Close]

BLAST of Bhi02G000148 vs. TrEMBL
Match: tr|G7JT84|G7JT84_MEDTR (Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=11445532 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 12  ILVLCLSFLVVCVSSVAEARKMLFLA--YDSVRDDKNSLTTALETN-NRCKYLKNIHCCE 71
           ILV+C+ F   C+ S   ARK +F+   +D  +   +S    L+ + ++C + K  H   
Sbjct: 7   ILVICILFW-ACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNH-KRKHLSS 66

Query: 72  CFFLSSMKMMIDNNVTNFEEKRVVPTGPNPLHNK 103
           C+          NN ++ E+KRVVPTGPNPLHN+
Sbjct: 67  CY----------NNTSSSEDKRVVPTGPNPLHNR 88

[Close]

BLAST of Bhi02G000148 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_1G433060 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-23
Identity = 69/110 (62.73%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MSGAMGLAKSSILVLCLSFLVVCVSSVAEARKMLFLAYDSVRDDKNSLTTAL--ETNNRC 60
           MSGAMGL+KSSIL+  LS LVVCV+SVA ARK LFL ++ VRD+KNSLTT L   T NRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYLKN-----IHCCECF--FLSSMKMMIDNNVTNFEEKRVVPTGPNPLHN 102
           KY KN     +HCCECF                NFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Bhi02G000148 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 9   KSSILVLCLSFLVVCVSSVAEARKMLFLAYDSVRDDKNSLTTALETNNRCKYLKNIHCCE 68
           +SSILVL LS + VC+ SV  ARKMLFLA DS RD+ NSLT A+E + RCK  K ++CC 
Sbjct: 113 RSSILVLSLS-VFVCIGSVVGARKMLFLAQDSTRDN-NSLTIAMENSRRCK-SKKLYCCG 171

Query: 69  CF 71
           CF
Sbjct: 173 CF 171

[Close]

BLAST of Bhi02G000148 vs. NCBI nr
Match: XP_007154669.1 (hypothetical protein PHAVU_003G137800g [Phaseolus vulgaris] >ESW26663.1 hypothetical protein PHAVU_003G137800g [Phaseolus vulgaris])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 29/95 (30.53%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 10  SSILVLCLSFLVVCVSSVAEARKMLFLA--YDSVRDDKNSLTTALETNNRCKYLKNIHCC 69
           + ++++C   L  C++S   ARK +F++  +D  +   N++ +A ++ ++C   +++ C 
Sbjct: 4   AELILVCFLLLWACIASNTVARKTVFVSNFFDGAKKKTNTMLSA-DSAHKCNRKRHLSC- 63

Query: 70  ECFFLSSMKMMIDNNVTNFEEKRVVPTGPNPLHNK 103
                        NN T+ E+KR+VPTGPNPLHN+
Sbjct: 64  -----------YHNNTTSLEDKRLVPTGPNPLHNR 85

[Close]

BLAST of Bhi02G000148 vs. NCBI nr
Match: AES92208.1 (Clavata3/ESR (CLE) gene family member [Medicago truncatula])

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 12  ILVLCLSFLVVCVSSVAEARKMLFLA--YDSVRDDKNSLTTALETN-NRCKYLKNIHCCE 71
           ILV+C+ F   C+ S   ARK +F+   +D  +   +S    L+ + ++C + K  H   
Sbjct: 7   ILVICILFW-ACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNH-KRKHLSS 66

Query: 72  CFFLSSMKMMIDNNVTNFEEKRVVPTGPNPLHNK 103
           C+          NN ++ E+KRVVPTGPNPLHN+
Sbjct: 67  CY----------NNTSSSEDKRVVPTGPNPLHNR 88

The following BLAST results are available for this feature:

BLAST of Bhi02G000148 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi02G000148 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi02G000148 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXI1\|A0A0A0LXI1_CUCSA	4.0e-23	62.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1	[more]
tr\|V7CBF3\|V7CBF3_PHAVU	2.4e-04	30.53	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G137800g PE=4 ...	[more]
tr\|G7JT84\|G7JT84_MEDTR	4.2e-04	36.17	Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=11445532...	[more]

BLAST of Bhi02G000148 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65507.1	6.0e-23	62.73	hypothetical protein Csa_1G433060 [Cucumis sativus]	[more]
XP_023003872.1	4.6e-07	61.29	putative receptor-like protein kinase At4g00960 [Cucurbita maxima]	[more]
XP_007154669.1	3.7e-04	30.53	hypothetical protein PHAVU_003G137800g [Phaseolus vulgaris] >ESW26663.1 hypothet...	[more]
AES92208.1	6.3e-04	36.17	Clavata3/ESR (CLE) gene family member [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048731	system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000148	Bhi02M000148	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi02G000148	Csa1G433060	Cucumber (Chinese Long) v2	cuwgoB104
Bhi02G000148	MELO3C017406	Melon (DHL92) v3.5.1	mewgoB306
Bhi02G000148	ClCG06G013900	Watermelon (Charleston Gray)	wcgwgoB548
Bhi02G000148	CSPI01G20780	Wild cucumber (PI 183967)	cpiwgoB105
Bhi02G000148	CmaCh11G003450	Cucurbita maxima (Rimu)	cmawgoB0152
Bhi02G000148	CmoCh11G003470	Cucurbita moschata (Rifu)	cmowgoB0146
Bhi02G000148	Lsi06G012300	Bottle gourd (USVL1VR-Ls)	lsiwgoB519
Bhi02G000148	Cp4.1LG04g13440	Cucurbita pepo (Zucchini)	cpewgoB0897
Bhi02G000148	MELO3C017406.2	Melon (DHL92) v3.6.1	medwgoB304
Bhi02G000148	CsaV3_1G032100	Cucumber (Chinese Long) v3	cucwgoB110
Bhi02G000148	Cla018881	Watermelon (97103) v1	wgowmB685
Bhi02G000148	Cla97C06G123340	Watermelon (97103) v2	wgowmbB656

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G000148	Cucurbita pepo (Zucchini)	cpewgoB0467
Bhi02G000148	Silver-seed gourd	carwgoB0710
Bhi02G000148	Silver-seed gourd	carwgoB0924
Bhi02G000148	Cucumber (Gy14) v1	cgywgoB570
Bhi02G000148	Cucumber (Gy14) v2	cgybwgoB099
Bhi02G000148	Cucurbita maxima (Rimu)	cmawgoB0077
Bhi02G000148	Cucurbita moschata (Rifu)	cmowgoB0071