CSPI01G20780 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G20780
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 16401078 .. 16401638 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAAACTATAAATCTCATATATCATCTTTTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATCATCATTTCCAAATCATCAATTTTTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAAGTAGAGAGGAAAAAGAACAAGTGATCAAGATCAAGATCAAAGTCAATAATATATAATATTATAGTTTATGCTGATCTTGATTATTATCATGCATGATTATGATATATATATATATATATAT

mRNA sequence

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Homology

[Close]

BLAST of CSPI01G20780 vs. TrEMBL
Match: A0A0A0LXI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of CSPI01G20780 vs. NCBI nr
Match: gi|700210411|gb|KGN65507.1| (hypothetical protein Csa_1G433060 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

The following BLAST results are available for this feature:

BLAST of CSPI01G20780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G20780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXI1_CUCSA	2.8e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433060 PE=4 SV=1	[more]

BLAST of CSPI01G20780 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G20780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210411\|gb\|KGN65507.1\|	4.0e-56	100.00	hypothetical protein Csa_1G433060 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G20780.1	CSPI01G20780.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G20780	Cla018881	Watermelon (97103) v1	cpiwmB087
CSPI01G20780	Csa1G433060	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G20780	MELO3C017406	Melon (DHL92) v3.5.1	cpimeB043
CSPI01G20780	ClCG06G013900	Watermelon (Charleston Gray)	cpiwcgB072
CSPI01G20780	Lsi06G012300	Bottle gourd (USVL1VR-Ls)	cpilsiB060
CSPI01G20780	MELO3C017406.2	Melon (DHL92) v3.6.1	cpimedB037
CSPI01G20780	CsaV3_1G032100	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G20780	Cla97C06G123340	Watermelon (97103) v2	cpiwmbB069
CSPI01G20780	Bhi02G000148	Wax gourd	cpiwgoB105
CSPI01G20780	CmaCh11G003450	Cucurbita maxima (Rimu)	cmacpiB099
CSPI01G20780	CmoCh11G003470	Cucurbita moschata (Rifu)	cmocpiB091
CSPI01G20780	Cp4.1LG04g13440	Cucurbita pepo (Zucchini)	cpecpiB641
CSPI01G20780	CsGy1G020560	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G20780	Cucumber (Gy14) v1	cgycpiB424
CSPI01G20780	Cucurbita maxima (Rimu)	cmacpiB060
CSPI01G20780	Cucurbita moschata (Rifu)	cmocpiB052
CSPI01G20780	Cucurbita pepo (Zucchini)	cpecpiB352
CSPI01G20780	Silver-seed gourd	carcpiB0625
CSPI01G20780	Silver-seed gourd	carcpiB0822