CSPI01G20780.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G20780.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 16401078 .. 16401638 (+)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAAAACTATAAATCTCATATATCATCTTTTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATCATCATTTCCAAATCATCAATTTTTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAAGTAGAGAGGAAAAAGAACAAGTGATCAAGATCAAGATCAAAGTCAATAATATATAATATTATAGTTTATGCTGATCTTGATTATTATCATGCATGATTATGATATATATATATATATATAT

mRNA sequence

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA
Homology
[Close]
BLAST of CSPI01G20780.1 vs. TrEMBL
Match: A0A0A0LXI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]
BLAST of CSPI01G20780.1 vs. NCBI nr
Match: gi|700210411|gb|KGN65507.1| (hypothetical protein Csa_1G433060 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

The following BLAST results are available for this feature:
BLAST of CSPI01G20780.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G20780.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXI1_CUCSA2.8e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G433060 PE=4 SV=1[more]
BLAST of CSPI01G20780.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G20780.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210411|gb|KGN65507.1|4.0e-56100.00hypothetical protein Csa_1G433060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G20780CSPI01G20780gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G20780.1CSPI01G20780.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G20780.1.utr5p1CSPI01G20780.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G20780.1.cds1CSPI01G20780.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G20780.1.utr3p1CSPI01G20780.1.utr3p1three_prime_UTR