CsaV3_1G032100.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032100.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 19099504 .. 19100195 (+)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTCCCTTTCTCTCCCTCTCTCATTTTCTCGATTCCTTTTGCCTTATAATTTTTAATTTTCATTCCCTCTTTAATTTCTTCCTTCACAGGTCACTTTTCAACTATAAATTCTCCATTCTCTTCTTCTTTTTTGTTTTGTTTTGTTTTGTTTTAAAACTATAAATCTCATATATCATCTTTTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATCATCATTTCCAAATCATCAATTTTTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAAGTAGAGAGGAAAAAGAACAAGTGATCAAGATCAAGATCAAAGTCAATAATATATAATATTATAGTTTATGCTGATCTTGATTATTATCATGCATGATTATGA

mRNA sequence

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Protein sequence

MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Homology
[Close]
BLAST of CsaV3_1G032100.1 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_1G433060 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

[Close]
BLAST of CsaV3_1G032100.1 vs. TrEMBL
Match: tr|A0A0A0LXI1|A0A0A0LXI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-45
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFXXXXXXXXXXXXXXXXNFEEKRVVPTGPNPLHN 110

The following BLAST results are available for this feature:
BLAST of CsaV3_1G032100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65507.11.4e-44100.00hypothetical protein Csa_1G433060 [Cucumis sativus][more]
BLAST of CsaV3_1G032100.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032100.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032100.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXI1|A0A0A0LXI1_CUCSA9.0e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G032100CsaV3_1G032100gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032100.1.exon1CsaV3_1G032100.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G032100.1.cds1CsaV3_1G032100.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G032100.1CsaV3_1G032100.1-proteinpolypeptide