CsaV3_1G029080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G029080
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUPF0057 membrane protein
Locationchr1 : 15909727 .. 15910075 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTACGTTTCTGATTCTTTTCTCCTTTTGTTTGAATTTTTCCTCTTTTCTTTTTTTTTTATCAATTCGAATGTAATTCTGATTTATGATTGCTTGTGGTGGTGGTGGTGCTTGTGGTTGCAGGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAG

mRNA sequence

ATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAG

Coding sequence (CDS)

ATGCCATCTCGCTGTGAAATCTTCTGCGAGATTCTCATTGCTATCTTGATTCCTCCTTTGGGCGTCTGTCTCAGGCATGGATGTTGCACCGTTGAGTTTTGTATATGCCTTCTTTTGACATTTCTCGGTTATGTTCCTGGAATCATCTACGCTTTGTATGCCATCGTTTTCATCGATCGCAATGAGTACTTCGATGAATACAGACGTCCTCTGTATGCGCCGGCCTAG

Protein sequence

MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDRNEYFDEYRRPLYAPA
Homology
[Close]
BLAST of CsaV3_1G029080 vs. NCBI nr
Match: XP_004146673.1 (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN65173.1 hypothetical protein Csa_1G257300 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 4.6e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. NCBI nr
Match: XP_008443846.1 (PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          +EYFDEYRRPLYAPA
Sbjct: 61 DEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. NCBI nr
Match: XP_022135490.1 (UPF0057 membrane protein At4g30660-like [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-33
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGY+PGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYIPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          ++YFDEYRRPLY  A
Sbjct: 61 DQYFDEYRRPLYVLA 75

[Close]
BLAST of CsaV3_1G029080 vs. NCBI nr
Match: XP_002308410.2 (UPF0057 membrane protein At4g30660 [Populus trichocarpa] >XP_011033391.1 PREDICTED: UPF0057 membrane protein At4g30660-like [Populus euphratica] >ABK93775.1 unknown [Populus trichocarpa] >PNT32316.1 hypothetical protein POPTR_006G182500v3 [Populus trichocarpa])

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEI CEILIAIL+PPLGVC RHGCC+VEFCICLLLT LGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. NCBI nr
Match: XP_022925751.1 (UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022925759.1 UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022965238.1 UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_022965241.1 UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_023521009.1 UPF0057 membrane protein At4g30660-like [Cucurbita pepo subsp. pepo] >XP_023521011.1 UPF0057 membrane protein At4g30660-like [Cucurbita pepo subsp. pepo] >XP_023521012.1 UPF0057 membrane protein At4g30660-like [Cucurbita pepo subsp. pepo] >XP_023529545.1 UPF0057 membrane protein At4g30660-like [Cucurbita pepo subsp. pepo] >XP_023529546.1 UPF0057 membrane protein At4g30660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 3.7e-33
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M +RCEIFCEILIAILIPPLGVC RHGCCTVEFCICLLLTFLGYVPGIIYALY I+FIDR
Sbjct: 1  MATRCEIFCEILIAILIPPLGVCFRHGCCTVEFCICLLLTFLGYVPGIIYALYVIIFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          +EYFDEYRRPLYAPA
Sbjct: 61 DEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. TAIR10
Match: AT4G28088.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 126.3 bits (316), Expect = 7.9e-30
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M + CEI CEI+IAILIPPLGVCLRHGCCT EF ICL+LT LGYVPGIIYALYAIV++DR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 NEYFDEYRRPLY 73
          +++FDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]
BLAST of CsaV3_1G029080 vs. TAIR10
Match: AT4G30660.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 124.8 bits (312), Expect = 2.3e-29
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPS CEI CEI+IAIL+PPLGVC R GCCTVEF ICL+LT LGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 NEYFDEYRRPLYA 74
           EYFDEYRRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]
BLAST of CsaV3_1G029080 vs. TAIR10
Match: AT2G24040.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-28
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S CE+ CEI IAIL+PP+GVCLRHGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 NEYFDEYRRPLY 73
          +EYFDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]
BLAST of CsaV3_1G029080 vs. TAIR10
Match: AT4G30650.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-21
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S  E+FCEILIAIL+PPLGVCL+ GCCTVEF ICL+LT LGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

[Close]
BLAST of CsaV3_1G029080 vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-12
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 6  EIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIV 57
          E F EI++AIL+PP+GV LR+G C VEF ICLLLT LGY+PGIIYA+Y +V
Sbjct: 4  ETFLEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 53

[Close]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match: sp|Q9SUI0|RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-28
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPS CEI CEI+IAIL+PPLGVC R GCCTVEF ICL+LT LGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 NEYFDEYRRPLYA 74
           EYFDEYRRP+Y+
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match: sp|O82232|RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-27
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S CE+ CEI IAIL+PP+GVCLRHGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 NEYFDEYRRPLY 73
          +EYFDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match: sp|Q9M095|RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-20
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          M S  E+FCEILIAIL+PPLGVCL+ GCCTVEF ICL+LT LGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

[Close]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match: sp|Q9LRI7|OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-18
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 4  RCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDRNEY 63
          RC  F EIL+AI++PPLGV LR GCC++EFCICLLLT LGYVPGIIYA+Y +V +D ++Y
Sbjct: 5  RCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQY 64

Query: 64 FDEY 68
            EY
Sbjct: 65 QREY 68

[Close]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match: sp|A2Y075|LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-10
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 10 EILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAI 56
          +ILIAI++PPLGV L+ G C  EF ICLLLTFLGY+PGIIYA+YAI
Sbjct: 9  DILIAIILPPLGVFLKFG-CGHEFWICLLLTFLGYIPGIIYAIYAI 53

[Close]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match: tr|A0A0A0LTR2|A0A0A0LTR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257300 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match: tr|A0A1S3B9R0|A0A1S3B9R0_CUCME (UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103487341 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          +EYFDEYRRPLYAPA
Sbjct: 61 DEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match: tr|A9PBM2|A9PBM2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G182500v3 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEI CEILIAIL+PPLGVC RHGCC+VEFCICLLLT LGYVPGIIYALYAIVFIDR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          NEYFDEYRRPLYAPA
Sbjct: 61 NEYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match: tr|A0A2I4F9J0|A0A2I4F9J0_9ROSI (UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC108996740 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 67/75 (89.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MPSRCEIFCEILIAIL+PPLGVC RHGCC+VEFCICLLLT LGY+PGIIYALYAIVF+DR
Sbjct: 1  MPSRCEIFCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYIPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYAPA 76
          ++YFDEYRRPLYAPA
Sbjct: 61 DQYFDEYRRPLYAPA 75

[Close]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match: tr|A0A2H5P874|A0A2H5P874_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_112610 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.1e-33
Identity = 66/74 (89.19%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60
          MP+RCEIFCEILIA+L+PP+GVCLRHGCC+VEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPTRCEIFCEILIAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 NEYFDEYRRPLYAP 75
          +EYFDEYRRPLYAP
Sbjct: 61 DEYFDEYRRPLYAP 74

The following BLAST results are available for this feature:
BLAST of CsaV3_1G029080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146673.14.6e-36100.00PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN65173.1... [more]
XP_008443846.11.8e-3598.67PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo][more]
XP_022135490.12.2e-3393.33UPF0057 membrane protein At4g30660-like [Momordica charantia][more]
XP_002308410.22.8e-3393.33UPF0057 membrane protein At4g30660 [Populus trichocarpa] >XP_011033391.1 PREDICT... [more]
XP_022925751.13.7e-3392.00UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022925759.1 UPF... [more]
BLAST of CsaV3_1G029080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28088.17.9e-3079.17Low temperature and salt responsive protein family[more]
AT4G30660.12.3e-2978.08Low temperature and salt responsive protein family[more]
AT2G24040.11.1e-2876.39Low temperature and salt responsive protein family[more]
AT4G30650.13.9e-2176.67Low temperature and salt responsive protein family[more]
AT2G38905.11.1e-1268.63Low temperature and salt responsive protein family[more]
BLAST of CsaV3_1G029080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SUI0|RC24_ARATH4.1e-2878.08UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ... [more]
sp|O82232|RC22_ARATH2.1e-2776.39UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ... [more]
sp|Q9M095|RC23_ARATH7.1e-2076.67UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ... [more]
sp|Q9LRI7|OSR8_ORYSJ3.0e-1867.19Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S... [more]
sp|A2Y075|LTI6B_ORYSI3.9e-1073.91Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S... [more]
BLAST of CsaV3_1G029080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTR2|A0A0A0LTR2_CUCSA3.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257300 PE=4 SV=1[more]
tr|A0A1S3B9R0|A0A1S3B9R0_CUCME1.2e-3598.67UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103487341 PE=4 ... [more]
tr|A9PBM2|A9PBM2_POPTR1.9e-3393.33Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G182500v3 PE=... [more]
tr|A0A2I4F9J0|A0A2I4F9J0_9ROSI3.2e-3389.33UPF0057 membrane protein At4g30660-like OS=Juglans regia OX=51240 GN=LOC10899674... [more]
tr|A0A2H5P874|A0A2H5P874_CITUN7.1e-3389.19Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_112610 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G029080.1CsaV3_1G029080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 9..56
e-value: 5.5E-17
score: 61.6
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..73
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 12..27
NoneNo IPR availablePANTHERPTHR21659:SF34LOW TEMPERATURE AND SALT RESPONSIVE PROTEINcoord: 1..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G029080CSPI01G17820Wild cucumber (PI 183967)cpicucB000
CsaV3_1G029080CSPI02G05240Wild cucumber (PI 183967)cpicucB072
CsaV3_1G029080Cucsa.170640Cucumber (Gy14) v1cgycucB273
CsaV3_1G029080Cucsa.090120Cucumber (Gy14) v1cgycucB096
CsaV3_1G029080CmaCh11G004520Cucurbita maxima (Rimu)cmacucB0111
CsaV3_1G029080CmaCh12G008530Cucurbita maxima (Rimu)cmacucB0191
CsaV3_1G029080CmoCh11G004520Cucurbita moschata (Rifu)cmocucB0100
CsaV3_1G029080CmoCh12G008570Cucurbita moschata (Rifu)cmocucB0175
CsaV3_1G029080Cp4.1LG04g08770Cucurbita pepo (Zucchini)cpecucB0796
CsaV3_1G029080CsGy1G016310Cucumber (Gy14) v2cgybcucB006
CsaV3_1G029080CsGy1G017970Cucumber (Gy14) v2cgybcucB001
CsaV3_1G029080CsGy2G005380Cucumber (Gy14) v2cgybcucB058
CsaV3_1G029080Carg14080Silver-seed gourdcarcucB0537
CsaV3_1G029080Carg16431Silver-seed gourdcarcucB0951
CsaV3_1G029080Cla018743Watermelon (97103) v1cucwmB091
CsaV3_1G029080MELO3C010211Melon (DHL92) v3.5.1cucmeB054
CsaV3_1G029080MELO3C004127Melon (DHL92) v3.5.1cucmeB081
CsaV3_1G029080ClCG06G012500Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G029080Lsi06G011440Bottle gourd (USVL1VR-Ls)cuclsiB085
CsaV3_1G029080Lsi11G006900Bottle gourd (USVL1VR-Ls)cuclsiB008
CsaV3_1G029080MELO3C004127.2Melon (DHL92) v3.6.1cucmedB075
CsaV3_1G029080MELO3C010211.2Melon (DHL92) v3.6.1cucmedB052
CsaV3_1G029080Cla97C06G121730Watermelon (97103) v2cucwmbB063
CsaV3_1G029080Bhi06G001223Wax gourdcucwgoB006
CsaV3_1G029080Bhi02G000674Wax gourdcucwgoB104
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G029080CsaV3_2G007590Cucumber (Chinese Long) v3cuccucB008
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G029080Cucurbita moschata (Rifu)cmocucB0001
CsaV3_1G029080Cucurbita moschata (Rifu)cmocucB0054
CsaV3_1G029080Cucurbita pepo (Zucchini)cpecucB0429
CsaV3_1G029080Cucurbita pepo (Zucchini)cpecucB0670
CsaV3_1G029080Cucurbita pepo (Zucchini)cpecucB0954
CsaV3_1G029080Wild cucumber (PI 183967)cpicucB204
CsaV3_1G029080Bottle gourd (USVL1VR-Ls)cuclsiB074
CsaV3_1G029080Melon (DHL92) v3.5.1cucmeB086
CsaV3_1G029080Melon (DHL92) v3.6.1cucmedB081
CsaV3_1G029080Watermelon (Charleston Gray)cucwcgB073
CsaV3_1G029080Watermelon (97103) v1cucwmB047
CsaV3_1G029080Watermelon (97103) v2cucwmbB062
CsaV3_1G029080Wax gourdcucwgoB081
CsaV3_1G029080Cucumber (Chinese Long) v3cuccucB032
CsaV3_1G029080Silver-seed gourdcarcucB0142
CsaV3_1G029080Cucumber (Gy14) v2cgybcucB165
CsaV3_1G029080Cucumber (Gy14) v1cgycucB413
CsaV3_1G029080Cucurbita maxima (Rimu)cmacucB0012
CsaV3_1G029080Cucurbita maxima (Rimu)cmacucB0067
CsaV3_1G029080Cucurbita maxima (Rimu)cmacucB0517