CsaV3_1G013580 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G013580
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	vacuolar protein sorting-associated protein 24 homolog 1
Location	chr1 : 8865026 .. 8868413 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGTGATGAACATCTTGAAGCCCAAACCAAATCCTCAACAACAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACGTCGAACGCCAAATTCGAGGTAACGGATCGTATTTTCGTATCTTCCGTTTCAATCTTTTTCGTGTTTTCTTTTATGTATCTGTTCCTTGCGAGGTTAAAATTCTGATCATGCCATCCATTCTTCTTCTACCGTTAGGGATTCTTTAATTCTTCATGTGTCTTTTATTTGATTTCTTCTTCTTTGATTGATTTGGGTCAGATATACAGCGAGAAGAGAAAAATGTGCAGAAAGCCATTAGGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGTATGTTAAGAACTTGAGGTTATCTCTGTTTAATTTTCTTATTAGGGGTTTCATAATGAAAGACAAATTTCGATCTGGGAAATTTTCTACAAGTTAAGAATATTTAGGGGTATTGAGGTGAAAAATGGGAGAATCTGAAAAATATTAACCAAAGATGTTATATGAAAAATTATTTTCCCTAATGTTCTTTTAATTCGGGAACAAAACGAGGGGACTATTCTGTTCCCTCCCTTGTTTGTTCTTGTGTTTTTGTATAAATCTTATGCCTTGAGGGCAAAGCATGACTTGAAAGTTGGGGGTGGGGTTTGGTTGTGAGAGAATGTGCAGGTTTGCCTATAGCTATTACTACTGTTGCTAAGGCATTACGAAATAAGCCTTCCGACATTTGGAATGATGCCTTAGATCAACTTAAAAGTGGATAACCATCTTATTCATTAATGCACAACGTTTACAACTCTAGAATGAAAAAGGAGACCTTTGTTAGATAACATGCCCTAGATATGATAGTTCATTTTTTAGTTTTGCTGTAAAAAAGGAAAAAAAATTAGGTTCAGAGTAATAGAATCTCATTTTTCTCTCATCCTTCGTAAATCTTTTTTAAAACTTTAATGATAAGTATCTACCACTAATTAAGAATATATTTATGGAATGTCCTACAGCCCCTGCTCGTAATGCATACCAAGCTGTTAGGTATACTGCTGAATAAAGGCCAATGATAAAGCTCGAGTCTACATCTTCGCAAGTCTGTCTGCAGGGTTTTGGTTTTGTTGACAGGAAAACTAAATTGCATGAAATTAAAGTGCACAATAAACTATTGACTATAGTATGAATGCTTGAATTTCATGTAGTGATGTGAGAGTCGATCAAGTTCAAGTTGATAGTCTAAATGGTCTACAGTATAGGAATAGGTAATCACTTTGGGCTGAGGTTTTTTTTTCTCTTAATTTTATAAAAGCTACATCTTTCATGGACAAATATTGCAAGGCTATACACAAAAAGCCAAGCCCCCTAAAAGAGGAACCAAACTTCACTAGGCTCCTTATCCTAAACACTGTTATTCCACTCGTCCAAAAATACTCCAAATTATTATGCACCCAGCAAATCATAAAAGTTGGTCCTTATCACGCAGAAGTGGATGGGATGAACTCTCCAATCAACTATAATCATTTACATTGCTGAGTTTCTTTTTGTTCCACTGGTACCTTAGATGGCTGGGTTCAGTTTGACATTGAGGTTTCCTATATATCTGGAATGTATTTATGTGATATTATCTAAATTCTCAGTGGACTAGGGAAAATGATCTATGAATTAGTACACTGGACTAGGGAAAATGATCTATGAATTAGTACACTGGACCTAATCTCTAATTGTTTCAGCATGGGGTTATGTTCTATCTCTTGCTTAATATTGCCATTTATGTGTTTCAGGCACTGGCTAAAGAAATTGTGAGGTCTAAAAAAACTGTGAACCGCCTACATGAAAACAAGGCACAGCTTAATTCGATATCCATGCACCTTGGCGAAAGTGTTGGTACGATGTTTTCCATATTTTAAAGCTTGAAAATTCTTCTTGGTCCCTTTGCTGTTTTATCTTCTACAACCTAACTAAATGCTTTGTGGAGTCTGAGAGATAATTTGGTGATTATGAATCCATGACAAACTCTGTAATATAGCTAAAGTTTATTGTAAACAATAGTTTGCTGAAGATATACATGCATGCATGCATATATATATGTAAAGATATATTTTTTGCTTATGTTATCAATTGAATACGATAGAAAAGCTTGAATACAGATAGAAAAGCTTGAATTGGTATGAAATTTAGAAGTATAAGGACGGAAGGTGGCGGAAGGGATTCTTACTTAGCTCAATTTACAACAACTTTTTATATCGTAGCACAACATAATATTACCATTGTTGAAAGTCTACCAATTTTGCAGCCATTGCGAGAACGGTGGGACATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAAAAACAATGCAAGAGTTTAGCAAGGAGATGACCAAGGTATCTTTTTTAAGAATATAAACAATTTCTTACTTTCTCCTTGGTCAAGGCTATGAATTTAGAGGCTTGGAGCTGACACAAGACTTGATTGAACATTATTTGTTCGGTTCTTTTTTGTGTGGGTAGAAATCTTTTTTTATCAAGTTACAATGTGTTTATCCCGGTTCCATAACTTGGTTTATCTTTTATTGTCATTGGGAGAATGAGGAAATAATTTTATCTTTTATTTATAGAAACATAGTTAACTTTGTTCAACACCAAAAGGAAAAAGCCTAAGGTTTGAGGTGGAGAGAACCTCCTCCAAAGAGACTATAAGAGAGAGCCTACTAATTGTACAAAATTATGAGGAGTCTATAATTACAAAAGGATGTTTTGTGGTTGGAGCTCCAACACAACTTTGTGTACGACCCGTTTGTTAAATCCTCATGCTCCTTTGTTTGTAAACATTTATCGAAAGGATACTTGCTTGTAGCCTTATTGTCAAGTTTTTGTTCTCTGTTTAACTTACCAATTGCCACTAAATTTATATGTTTTCTTTAGAAAGTGTTATAATACAATTATTAATGTAGCTAGTTTTTTATATACTGTATCTATAGGCTGGGGTGATCGAGGAATTTGTAAATGATGCGGTGGATTCAGCACTAGATTCTGAGGATATTGAAGAGGAGATTGAAGAGGAAGTTGACAAAGTTTTGACTGCCATTGCCGGTGAGACTGCGGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAAGATGAAACAACCGGCTCATGTGCAGGAAGTCCGGGAAGAGGTATCTATTGCATAATTTTGAGCACCCACGTTCTATTCCTACGATGGTTATGTACAGGAAAAGTATTGTGACATTTATTTCTTTTGCAGGAAGCAATAGCTGAGGGCATTGATGACGAGGAAGAACTAGAAGAGATAAGGGCTCGACTTGCGAAAGTTAGATCATAA

mRNA sequence

ATGGAAAAAGTGATGAACATCTTGAAGCCCAAACCAAATCCTCAACAACAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACGTCGAACGCCAAATTCGAGATATACAGCGAGAAGAGAAAAATGTGCAGAAAGCCATTAGGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGCACTGGCTAAAGAAATTGTGAGGTCTAAAAAAACTGTGAACCGCCTACATGAAAACAAGGCACAGCTTAATTCGATATCCATGCACCTTGGCGAAAGTGTTGCCATTGCGAGAACGGTGGGACATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAAAAACAATGCAAGAGTTTAGCAAGGAGATGACCAAGGCTGGGGTGATCGAGGAATTTGTAAATGATGCGGTGGATTCAGCACTAGATTCTGAGGATATTGAAGAGGAGATTGAAGAGGAAGTTGACAAAGTTTTGACTGCCATTGCCGGTGAGACTGCGGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAAGATGAAACAACCGGCTCATGTGCAGGAAGTCCGGGAAGAGGAAGCAATAGCTGAGGGCATTGATGACGAGGAAGAACTAGAAGAGATAAGGGCTCGACTTGCGAAAGTTAGATCATAA

Coding sequence (CDS)

ATGGAAAAAGTGATGAACATCTTGAAGCCCAAACCAAATCCTCAACAACAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACGTCGAACGCCAAATTCGAGATATACAGCGAGAAGAGAAAAATGTGCAGAAAGCCATTAGGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGCACTGGCTAAAGAAATTGTGAGGTCTAAAAAAACTGTGAACCGCCTACATGAAAACAAGGCACAGCTTAATTCGATATCCATGCACCTTGGCGAAAGTGTTGCCATTGCGAGAACGGTGGGACATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAAAAACAATGCAAGAGTTTAGCAAGGAGATGACCAAGGCTGGGGTGATCGAGGAATTTGTAAATGATGCGGTGGATTCAGCACTAGATTCTGAGGATATTGAAGAGGAGATTGAAGAGGAAGTTGACAAAGTTTTGACTGCCATTGCCGGTGAGACTGCGGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAAGATGAAACAACCGGCTCATGTGCAGGAAGTCCGGGAAGAGGAAGCAATAGCTGAGGGCATTGATGACGAGGAAGAACTAGAAGAGATAAGGGCTCGACTTGCGAAAGTTAGATCATAA

Protein sequence

MEKVMNILKPKPNPQQQLRDWQRRLRQECRNVERQIRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS

Homology

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BLAST of CsaV3_1G013580 vs. NCBI nr
Match: XP_004147294.1 (PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis sativus] >KGN64811.1 hypothetical protein Csa_1G109340 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 7.4e-45
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 228

[Close]

BLAST of CsaV3_1G013580 vs. NCBI nr
Match: XP_008463000.1 (PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 2.1e-44
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEK+MNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KRNDMV
Sbjct: 1   MEKMMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKEKMKQPAHVQEVREEEAIAEG+DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGVDDEEELEEIRARLAKVRS 228

[Close]

BLAST of CsaV3_1G013580 vs. NCBI nr
Match: XP_022152871.1 (vacuolar protein sorting-associated protein 24 homolog 1 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 207/229 (90.39%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEK+M++LKPK NPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRNDMV
Sbjct: 1   MEKMMSMLKPKANPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKE+VRS+KTVNRLHENKAQLNSISMHLGESVAIARTV  XXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GETAA
Sbjct: 121 XXXXMAITMQEFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVR-EEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKE+MKQPAHVQEVR EEEAIAEG+DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKERMKQPAHVQEVREEEEAIAEGVDDEEELEEIRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. NCBI nr
Match: XP_022964906.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 206/229 (89.96%), Postives = 213/229 (93.01%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEK+MN+LKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNDMV
Sbjct: 1   MEKMMNVLKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRS+KTVNRLHENKAQ+NSISMHLGES+AIARTV            XXXXX
Sbjct: 61  SAKALAKEIVRSRKTVNRLHENKAQVNSISMHLGESIAIARTVGHLSKSAEVMKLXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEV-REEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKE+MKQPA VQEV REEEAIAEG+DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKERMKQPARVQEVRREEEAIAEGVDDEEELEEIRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. NCBI nr
Match: XP_022970267.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 189/229 (82.53%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEK+MN+LKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNDMV
Sbjct: 1   MEKMMNVLKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRSKKTVNRLHENKAQ+NSISMHLGES+AIARTV                 
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQVNSISMHLGESIAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GETAA
Sbjct: 121 KAPEMETTMREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEV-REEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKE+MKQP+ VQEV REEEAIAEG+DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKERMKQPSRVQEVRREEEAIAEGVDDEEELEEIRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. TAIR10
Match: AT5G22950.1 (SNF7 family protein)

HSP 1 Score: 148.7 bits (374), Expect = 4.5e-36
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           ME+VMNI+KPKP+P+Q LRDW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIV S++TVNRL+ENKAQ+NSISMHLGESVAIARTV XXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAIAGETAA 180

Query: 181 QLPEAVRKEKMKQPAH-VQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           +LP AVRKE++K PA      REEEA+AEG+DDEEELEEIRARLAKVRS
Sbjct: 181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. TAIR10
Match: AT3G45000.1 (SNF7 family protein)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-18
Identity = 97/175 (55.43%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 55  KRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXX 114
           KRND+V+AKALA+EIV S++TV RL+ENKAQ+NSISMHLGES+A A TV           
Sbjct: 26  KRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMK 85

Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 174
                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 86  LVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 145

Query: 175 AGETAAQLPEAVRKEKMKQPAHVQE-VREEEAIAEGIDDEEELEEIRARLAKVRS 229
                 +LPEAVRK+KM  PA   E +  E+AI EG+D EEELE IR RLA VRS
Sbjct: 146 XXXXXXELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEELEAIRYRLANVRS 200

[Close]

BLAST of CsaV3_1G013580 vs. Swiss-Prot
Match: sp|Q9FFB3|VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS24-1 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.1e-35
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           ME+VMNI+KPKP+P+Q LRDW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIV S++TVNRL+ENKAQ+NSISMHLGESVAIARTV XXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAIAGETAA 180

Query: 181 QLPEAVRKEKMKQPAH-VQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           +LP AVRKE++K PA      REEEA+AEG+DDEEELEEIRARLAKVRS
Sbjct: 181 ELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. Swiss-Prot
Match: sp|Q9LXH5|VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS24-2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 97/175 (55.43%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 55  KRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXX 114
           KRND+V+AKALA+EIV S++TV RL+ENKAQ+NSISMHLGES+A A TV           
Sbjct: 26  KRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMK 85

Query: 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 174
                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 86  LVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 145

Query: 175 AGETAAQLPEAVRKEKMKQPAHVQE-VREEEAIAEGIDDEEELEEIRARLAKVRS 229
                 +LPEAVRK+KM  PA   E +  E+AI EG+D EEELE IR RLA VRS
Sbjct: 146 XXXXXXELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEELEAIRYRLANVRS 200

[Close]

BLAST of CsaV3_1G013580 vs. TrEMBL
Match: tr|A0A0A0LXU7|A0A0A0LXU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109340 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 228

[Close]

BLAST of CsaV3_1G013580 vs. TrEMBL
Match: tr|A0A1S3CIN5|A0A1S3CIN5_CUCME (vacuolar protein sorting-associated protein 24 homolog 1 OS=Cucumis melo OX=3656 GN=LOC103501246 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEK+MNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KRNDMV
Sbjct: 1   MEKMMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKEKMKQPAHVQEVREEEAIAEG+DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGVDDEEELEEIRARLAKVRS 228

[Close]

BLAST of CsaV3_1G013580 vs. TrEMBL
Match: tr|F6GW93|F6GW93_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00540 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 204/228 (89.47%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    KRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAAKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAK LA EIVRS++TVNRLHENKAQLNSISMHLGESVAIARTV XXXXXXXXXXXXXXXX
Sbjct: 61  SAKTLAMEIVRSRRTVNRLHENKAQLNSISMHLGESVAIARTVGXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA
Sbjct: 121 XXXXXXXTMQEFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKE++KQPA   E  +EEAIAEG DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKERVKQPAQTAEADDEEAIAEGADDEEELEEIRARLAKVRS 228

[Close]

BLAST of CsaV3_1G013580 vs. TrEMBL
Match: tr|A0A2P5FTM2|A0A2P5FTM2_9ROSA (Snf7 family OS=Trema orientalis OX=63057 GN=TorRG33x02_028950 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.8e-38
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KRNDMV
Sbjct: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKRNDMV 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAKALAKEIVRS+KTVNRLHENKAQ+NSISMHLGESVAIARTV XXXXXXXXXXXXXXXX
Sbjct: 61  SAKALAKEIVRSRKTVNRLHENKAQMNSISMHLGESVAIARTVGXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AGET A
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAIAGETTA 180

Query: 181 QLPEAVRKEKMKQPAHVQEV-REEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAV+KE++KQPA   E  REEE IAEG+DDEEELEE+RARLAKVRS
Sbjct: 181 QLPEAVKKERLKQPAQPSEAGREEEPIAEGVDDEEELEELRARLAKVRS 229

[Close]

BLAST of CsaV3_1G013580 vs. TrEMBL
Match: tr|A0A2P6QGT6|A0A2P6QGT6_ROSCH (Putative Snf7 family protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0057111 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.9e-38
Identity = 210/228 (92.11%), Postives = 215/228 (94.30%), Query Frame = 0


Query: 1   MEKVMNILKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNDMV 60
           MEKVMNI+KPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNDM 
Sbjct: 1   MEKVMNIIKPKPNPQQQLRDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDMG 60

Query: 61  SAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGESVAIARTVXXXXXXXXXXXXXXXXX 120
           SAK+LA EIVRS+KTVNRLHENKAQLNSISMHLGESVAIARTV XXXXXXXXXXXXXXXX
Sbjct: 61  SAKSLAVEIVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGETAA 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AGETAA
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAIAGETAA 180

Query: 181 QLPEAVRKEKMKQPAHVQEVREEEAIAEGIDDEEELEEIRARLAKVRS 229
           QLPEAVRKEK+KQPA  Q  +EEEAIAEG DDEEELEEIRARLAKVRS
Sbjct: 181 QLPEAVRKEKLKQPASAQAAQEEEAIAEGADDEEELEEIRARLAKVRS 228

The following BLAST results are available for this feature:

BLAST of CsaV3_1G013580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147294.1	7.4e-45	100.00	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis sat...	[more]
XP_008463000.1	2.1e-44	98.25	PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1 [Cucumis mel...	[more]
XP_022152871.1	1.2e-39	90.39	vacuolar protein sorting-associated protein 24 homolog 1 [Momordica charantia]	[more]
XP_022964906.1	1.6e-39	89.96	vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita m...	[more]
XP_022970267.1	1.6e-39	82.53	vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita m...	[more]

BLAST of CsaV3_1G013580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22950.1	4.5e-36	87.77	SNF7 family protein	[more]
AT3G45000.1	3.2e-18	55.43	SNF7 family protein	[more]

BLAST of CsaV3_1G013580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFB3\|VP241_ARATH	8.1e-35	87.77	Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana...	[more]
sp\|Q9LXH5\|VP242_ARATH	5.8e-17	55.43	Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis...	[more]

BLAST of CsaV3_1G013580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXU7\|A0A0A0LXU7_CUCSA	4.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109340 PE=3 SV=1	[more]
tr\|A0A1S3CIN5\|A0A1S3CIN5_CUCME	1.4e-44	98.25	vacuolar protein sorting-associated protein 24 homolog 1 OS=Cucumis melo OX=3656...	[more]
tr\|F6GW93\|F6GW93_VITVI	4.4e-38	89.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00540 PE=3 SV=...	[more]
tr\|A0A2P5FTM2\|A0A2P5FTM2_9ROSA	5.8e-38	91.27	Snf7 family OS=Trema orientalis OX=63057 GN=TorRG33x02_028950 PE=3 SV=1	[more]
tr\|A0A2P6QGT6\|A0A2P6QGT6_ROSCH	9.9e-38	92.11	Putative Snf7 family protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0057111...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007034	vacuolar transport

Vocabulary: **INTERPRO**
Term	Definition
IPR005024	Snf7_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G013580.1	CsaV3_1G013580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 1..228
None	No IPR available	PANTHER	PTHR10476:SF36	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 24 HOMOLOG 1-RELATED	coord: 1..228
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 21..188 e-value: 1.9E-29 score: 102.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G013580	CSPI01G13390	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G013580	CmaCh13G002410	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G013580	CmoCh13G002420	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G013580	Cp4.1LG02g12500	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G013580	CsGy1G013500	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G013580	Cla005095	Watermelon (97103) v1	cucwmB015
CsaV3_1G013580	MELO3C004945	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G013580	ClCG03G002800	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G013580	Lsi03G000140	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G013580	MELO3C004945.2	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G013580	Cla97C03G053850	Watermelon (97103) v2	cucwmbB032
CsaV3_1G013580	Bhi08G000204	Wax gourd	cucwgoB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G013580	Wax gourd	cucwgoB017
CsaV3_1G013580	Cucumber (Chinese Long) v3	cuccucB021
CsaV3_1G013580	Silver-seed gourd	carcucB0363
CsaV3_1G013580	Silver-seed gourd	carcucB0474
CsaV3_1G013580	Silver-seed gourd	carcucB1116
CsaV3_1G013580	Cucumber (Gy14) v1	cgycucB453
CsaV3_1G013580	Cucurbita maxima (Rimu)	cmacucB0518
CsaV3_1G013580	Cucurbita moschata (Rifu)	cmocucB0505
CsaV3_1G013580	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G013580	Bottle gourd (USVL1VR-Ls)	cuclsiB054