CsaV3_1G013260 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTGGCTATAATTTTCCTATTATTGTTGAGAGAGGAACTTTTCTTATTTTGATTTTTTATTTATTTCTTACAATAGTTTCCTCTTTATATTTATACCATTACGAAGATTAAGTCAATAGTAAATGAACTAACCATTGCAAGTTAAGAAACCCAACTGAAAGTCGCAGAAATAAAAAGCTCTAATCATAGTACTTTTAAAAGCAGTAATATGATAGTATCAATAAGAGTTAGAAAAGCTTACAAATCTGGTAGCTTCGATTGCTTATAAGACAGTAACAATTGATATTTTCTGCTACTTCCCTTTGCTTTCTTCTCTGGGTTTACATGAAAGTGTCACTTTCGCTACAAGGAGGAGGGGCTTGTGATGGGGGTGTGCCACACTGGATAATACCCCTTCCTCTCGCAAATTCTTGTCTTGTCTATACAAACAACAAGTGGGAAAAGCTTATTTCAGACAGTAAGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCATCCTAAAGAAAGGCAACAATCTGATTCTCTCCCTTTTAATCTTTTAAACTCTTCTATCATTTGTTCCATACTCGTTTCATCTAACCGATCTCAAGATTATTTGAAGCAGCAGTTCAATTACCTTAGGACTCCCAGCTTCCTTCTCACTATTCAATTACCTTGGCAAATTCCATGATATGTAAACTTGTTCGTGGAGACCAAACATCGATATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAATTCCTATGACGATCTTCATCCTCTCCTCTCTTCACAGTTTCCAATAACAGATATGGTGCTCTTAATATAACTCCAATTCTGTATCATCCCTTTCTAATGGTAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGATGAGCGATGGTCTTTCTCAAACATCCTATCATCACATTAATCAGCTACAAAGATTCCAGACGTGCAATCCCGGACCTGGGAATAAGCAGATGCAACAGTTTCACACAAGGAAGAATTGACAAACATGTACATATATAGAACAGTGCATATAAAAATGCTAACTCACAATAATTCTATATCAAGAGTAAGAAAATTGAAAATAGTTAGCCAGAGAGAGAGAGAAAGAGATTGCAATGCAAACAATAGAAATGGTTATAATTTACTAAACTATTTACCCTTTCCATATTAAAATGTATTTTCTAAGTCATGTCTTTGTCGAGGCATCAAACAAAAAGGCAGGCACTAAGCATAGAGATTAAAAAAATAGATCTTTATATGGCGGATCCTGCTTTTCTAGTTTCTAACCATAATCACCTAGCATCTTAAATGAATAGCTATATTACAATTCAAGTAAATTAGTCCATTTAAAAGAGATTAAAAAGAAAAAATAAATAAATTTCTGTTATACTTGTGATGTTTTCCGAAGATATTGAAAGCAAGGAATTAGGAGGATACATTTGAGAAAAGAAAAGTATATATGGACAATTCGAAGTGTCATAAAGTTTACAGAATAGCCTTAGTGAGCTCGGGATATTAAAGATGAATGAAATAGAGGAAATTACTCTAAAACAACAAAAAATGATTAGCATGTTTAAAAATGACTCTAAAGTCTAAGCCATGTCTTAAATCTCAAATCAATTTAGATACGAGTTTCATGCCATCAGAACTAATTCTAAAAGATTAAAAGCATGTTCTGGAGTGATTTTGAACCTAACAAATGTGACGTTAACCATTTTAATTAAAAGCATCCTCCAACAGCACAAGCATGGCATTTCAAATTGAAGAAAATATGACAAACTCTAGAGATTATTTATCCTATTCTCGATATAAACTATATTTACAATAGGCATACAGTATTTTTATAAAAACACAACAACAACACTAGGCAAACGATACTTGTGCTTTCTTCAAATTAACCTTGAGATTTGACAAGTTTTAAGTGATAAAAAAAAAAGCTGCCAATTCAGTAAGTGAATGAGAGAAAAGCCATTTTGCAGATGGAAATGTATGAAGGCAGAAATAAAACAATTGGATTAGCAAAGATGTGAAAGGCATTATTCCTAGATAGAAAAACAAGCAGAAGCTTAAAAAAATGATGATAAATTAAACATAGAGAAACAGCAAAAGTCAGTTGAATCATTGGATAGATTGATTCCAGGATGAAAAATTAATTTGGGCAAAATGGGCAATCTCATGGAAAGAGATCAAGAATTGATGATTGATCCCTAAAGTAAAATTAGGCCTCTGTAGAAAAAAGC ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETSSQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
BLAST of CsaV3_1G013260 vs. NCBI nr
Match: XP_011653704.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypothetical protein Csa_1G096610 [Cucumis sativus]) HSP 1 Score: 438.3 bits (1126), Expect = 1.5e-119 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. NCBI nr
Match: XP_008463280.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo]) HSP 1 Score: 409.1 bits (1050), Expect = 9.5e-111 Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. NCBI nr
Match: XP_022147939.1 (uncharacterized protein LOC111016745 [Momordica charantia]) HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79 Identity = 159/216 (73.61%), Postives = 174/216 (80.56%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. NCBI nr
Match: XP_023530414.1 (uncharacterized protein LOC111792994 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76 Identity = 148/213 (69.48%), Postives = 171/213 (80.28%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. NCBI nr
Match: XP_022988953.1 (uncharacterized protein LOC111486158 isoform X1 [Cucurbita maxima]) HSP 1 Score: 288.5 bits (737), Expect = 1.9e-74 Identity = 145/213 (68.08%), Postives = 167/213 (78.40%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TAIR10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 102.4 bits (254), Expect = 3.4e-22 Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TAIR10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19 Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TAIR10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 84.3 bits (207), Expect = 9.7e-17 Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TAIR10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 82.8 bits (203), Expect = 2.8e-16 Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TAIR10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11 Identity = 37/98 (37.76%), Postives = 48/98 (48.98%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. Swiss-Prot
Match: sp|F4JKK0|SUD1_ARATH (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 3.7e-05 Identity = 26/77 (33.77%), Postives = 34/77 (44.16%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. Swiss-Prot
Match: sp|Q32L65|MARH2_BOVIN (E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus OX=9913 GN=MARCH2 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05 Identity = 25/71 (35.21%), Postives = 32/71 (45.07%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. Swiss-Prot
Match: sp|Q68FA7|MARH3_XENTR (E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis OX=8364 GN=march3 PE=2 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04 Identity = 22/69 (31.88%), Postives = 31/69 (44.93%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TrEMBL
Match: tr|A0A0A0LUV6|A0A0A0LUV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G096610 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 9.7e-120 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TrEMBL
Match: tr|A0A1S3CJ88|A0A1S3CJ88_CUCME (probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 6.3e-111 Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TrEMBL
Match: tr|A0A200QXL2|A0A200QXL2_9MAGN (Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1727g28 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34 Identity = 91/211 (43.13%), Postives = 123/211 (58.29%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TrEMBL
Match: tr|A0A1U7Z2V9|A0A1U7Z2V9_NELNU (uncharacterized protein LOC104589735 OS=Nelumbo nucifera OX=4432 GN=LOC104589735 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 8.4e-31 Identity = 77/154 (50.00%), Postives = 97/154 (62.99%), Query Frame = 0
BLAST of CsaV3_1G013260 vs. TrEMBL
Match: tr|A0A2C9U657|A0A2C9U657_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G058000 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 8.4e-31 Identity = 85/197 (43.15%), Postives = 119/197 (60.41%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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