CSPI01G13090 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13090
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING/FYVE/PHD zinc finger superfamily protein, putative
Location	Chr1 : 8554307 .. 8555985 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATATGATAGTATCAATAAGAGTTAGAAAAGCTTACAAATCTGGTAGCTTCGATTGCTTTTAAGACAGTAACAATTGATATTTTCTGCTACTTCCCTTTGCTTTCTTCTCTGGGTTTACATGAAAGTGTCACTTTCGCTACAAGGAGGAGGGGCTTGTGATGGGGGTGTGCCACACTGGATAATACCCCTTCCTCTCGCAAATTCTTGTCTTGTCTATACAAACAACAAGTGGGAAAAGCTTATTTCAGACAGTAAGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCATCCTAAAGAAAGGCAACAATCTGATTCTCTCCCTTTTAATCTTTTAAACTCTTCTATCATTTGTTCCATACTCGTTTCATCTAACGGATCTCAAGATTATTTGAAGCAGCAGTTCAATTACCTTAGGACTCCCAGCTTCCTTCTCACTATTCAATTACCTTGGCAAATTCCATGATATGTAAACTTGTTCGTGGAGACCAAACATCGATATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAATTCCTATGACGATCTTCATCCTCTCCTCTCTTCACAGTTTCCAATAACAGATATGGTGCTCTTAATATAACTCCAATTCTGTATCATCCCTTTCTAATGGTAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGATGAGCGATGGTCTTTCTCAAACATCCTATCATCACATTAATCAGCTACAAAGATTCCAGACGTGCAATCCCGGACCTGGGAATAAGCAGATGCAACAGTTTCACACAAGGAAGAATTGACAAACATGTAAATATATAGAACAGTGCATATAAAAATGCTAACTCACAATAATTCTATATCAAGAGTAAGAAAATTAAAAATAGTTAGCCAGAGAGAGAGAGAAAGAGATTGCAATGCAAACAATAGAAATGGTTATAATTTACTAAACTATTTACCTTTCCATATTAAAATGTATTTTCTAAGTCATGTCTTTGTCGAGGCATCAAACAAAAAGGCAGGCACTAAGCATAGAGATTAAAAAAATAGATCTTTATATGGCGGCTCCTGCTTTTCTAGTTTCTAACCATAATCACCTAGCA

mRNA sequence

ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA

Coding sequence (CDS)

ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA

Homology

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BLAST of CSPI01G13090 vs. Swiss-Prot
Match: SUD1_ARATH (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-06
Identity = 32/115 (27.83%), Postives = 46/115 (40.00%), Query Frame = 1


Query: 27  PREAKGVIGGEGGTCVRENEENSKRHGVEMLETSSQPESHQNCIIDIKTNGESVDDEDSS 86
           P ++  + G      V E   +S        + S  P S+ +  +   T    V D+D  
Sbjct: 5   PADSLSISGAAASEVVSEPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGSRYV-DDDED 64

Query: 87  EEKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEIC 142
           EE VCRIC     N       +   C+C   +   H+DC   W  H   RQCE+C
Sbjct: 65  EEDVCRIC----RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 114

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BLAST of CSPI01G13090 vs. TrEMBL
Match: A0A0A0LUV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 2.6e-119
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEEN KRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

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BLAST of CSPI01G13090 vs. TrEMBL
Match: A0A067GE50_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 88/192 (45.83%), Postives = 112/192 (58.33%), Query Frame = 1


Query: 35  GGEGGTC-VRENEENSKRHGVE-MLETSSQPESH-QNCIIDIKTN--GESVDDEDSSEEK 94
           GGE     V+ N+  S +  VE  +   S+PE+  ++C+ID+K +  G     E+   E+
Sbjct: 182 GGENRDLEVKSNDLGSGKALVENSIRKMSKPETEKESCVIDMKCSAGGGKGFRENPDGER 241

Query: 95  VCRICHLGSEN-------ESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICG 154
           VCRICHLGSE         S T  LI LGC CKDELG++H DCAE WF  +GNR CEICG
Sbjct: 242 VCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICG 301

Query: 155 QTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLA 214
           Q+A N+       F    NERR +ASS+ S            CW GQ FCNFL+ C V+A
Sbjct: 302 QSAKNITGVGDYRFMEEWNERRFIASSSAS--------ERGGCWRGQPFCNFLMACLVIA 361

[Close]

BLAST of CSPI01G13090 vs. TrEMBL
Match: M5WUB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009296mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 87/220 (39.55%), Postives = 114/220 (51.82%), Query Frame = 1


Query: 5   NEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETSSQPE 64
           N+ S+ +   +  +T+V   S   EA  V G  G    + +E  S +  VE  +      
Sbjct: 87  NKNSNNLADGNVSETLVVINSD--EAARVTGDNGRLVTKVDELGSSKVSVEESKKKVPQA 146

Query: 65  SHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSE----------NESITSELIHLGCSC 124
              + +ID++        +    E+VCRICHL SE          N S  +ELIHLGC C
Sbjct: 147 ERDSHVIDVRCGSGKGFGDKWDVERVCRICHLSSEQSPDRKIETANSSTPTELIHLGCEC 206

Query: 125 KDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTV 184
           +DELG++H  CAE WF  +GNR CEICG+TA NV  +  S F    NE  L   S +   
Sbjct: 207 RDELGVAHGHCAEAWFKLKGNRTCEICGETANNVTGHGDSRFMEEWNEETL---SGIENN 266

Query: 185 SLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRADFF 214
           SLD       CW GQ FCNFL+ C V+AF+LPWFFR   F
Sbjct: 267 SLDRNGG---CWRGQPFCNFLMACLVIAFVLPWFFRVKMF 298

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BLAST of CSPI01G13090 vs. TrEMBL
Match: V4U9X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 87/192 (45.31%), Postives = 111/192 (57.81%), Query Frame = 1


Query: 35  GGEGGTC-VRENEENSKRHGVEM-LETSSQPESH-QNCIIDIKTN--GESVDDEDSSEEK 94
           GGE     V+ N+  S +  VE  +   S+PE+  ++C+ID+K +  G     E+   E+
Sbjct: 182 GGENRDLEVKSNDLGSGKVLVENGIRKMSKPETEKESCVIDMKCSAGGGKGFRENPDGER 241

Query: 95  VCRICHLGSEN-------ESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICG 154
           VCRICHLGSE         S T  LI LGC CKDELG++H DCAE WF  +GNR CEICG
Sbjct: 242 VCRICHLGSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICG 301

Query: 155 QTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLA 214
           Q+A N+       F    NERR + SS+ S            CW GQ FCNFL+ C V+A
Sbjct: 302 QSAKNITGVGDYRFMEEWNERRFIGSSSSS--------ERGGCWRGQPFCNFLMACLVIA 361

[Close]

BLAST of CSPI01G13090 vs. TrEMBL
Match: F6HMA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 87/229 (37.99%), Postives = 121/229 (52.84%), Query Frame = 1


Query: 2   IEQNEGSSGITSPDEP---KTIVASPSRP--REAKGVIGGEGGTCVRENEENSKRHGVEM 61
           +++ EG    +S  EP     I+ +P+ P   E +G  GG G    +   E         
Sbjct: 15  VDRVEGGIRESSSAEPVPETVIMITPAEPDAEERRGSSGGSGSDKAKAEAEAEAE----- 74

Query: 62  LETSSQPESHQNCIIDIKTNGESVDD---EDSSEEKVCRICHLGSENES---------IT 121
            E+ +  +   +C++D+K  G        E+   E+VCRICHL S+  +          +
Sbjct: 75  TESKASVKEVNSCVVDVKCGGGGGGGGLVENWDGERVCRICHLSSDPAAEGSIATCRDAS 134

Query: 122 SELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERR 181
           ++LI LGC CKDELGISH  CAE WF  +GNR CEICG+TA NV+    + F    NERR
Sbjct: 135 ADLIQLGCGCKDELGISHPHCAEAWFKLKGNRMCEICGETANNVKGVWDNRFMEDWNERR 194

Query: 182 LVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
              SS+ S     ++    C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 195 YAGSSSNS-----SDRGGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 233

[Close]

BLAST of CSPI01G13090 vs. TAIR10
Match: AT5G01070.2 (AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-22
Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 1


Query: 71  IDIKTNGESVDDED--SSEEKVCRICHLGSENESIT-SELIHLGCSCKDELGISHRDCAE 130
           +D +T+ ESV       S EK CRICHLG E+      + + LGCSCKD+LG  H+ CA+
Sbjct: 56  LDDETDTESVASGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCAD 115

Query: 131 IWFMHRGNRQCEICGQTATNVRR--NRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCC 190
            WF  +GN+ CEIC   A N  +  N      +  N   + A +T + V+  +      C
Sbjct: 116 TWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLC 175

Query: 191 WGQRFCNFLLTCTVLAFLLPWFF 209
            G RF NFLLTC V AF++ WFF
Sbjct: 176 RGNRFLNFLLTCMVCAFVISWFF 198

[Close]

BLAST of CSPI01G13090 vs. TAIR10
Match: AT5G05830.1 (AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1


Query: 85  SSEEKVCRICHLGSENESITSEL-IHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQ 144
           S  E+ CRICH+  +  ++ S + I LGCSCK +L  +H+ CAE WF  +GN+ CE+CG 
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

Query: 145 TATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFL 204
            A NV  +        RNE   V + T+ T         S   G RF NFLL C V AF+
Sbjct: 133 IAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 192

Query: 205 LPWFF 209
           + W F
Sbjct: 193 ISWLF 197

[Close]

BLAST of CSPI01G13090 vs. TAIR10
Match: AT2G37950.1 (AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-17
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 76  NGESVDDEDSSE--EKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHR 135
           +   +DD+D++   EK CRICHLG E        I LGCSCKD+L ++HR CAE WF  +
Sbjct: 67  SSSEIDDDDATAPPEKDCRICHLGVETSG--GGAIELGCSCKDDLAVAHRQCAETWFKIK 126

Query: 136 GNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCW-GQRFCN 195
           G++ CEIC   A NV    +        ER L      +         +   W  QR  N
Sbjct: 127 GDKTCEICQSVARNV-GGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVN 186

Query: 196 FLLTCTVLAFLLPWFF 209
            +L C V  F + W F
Sbjct: 187 LVLACMVFGFFISWIF 199

[Close]

BLAST of CSPI01G13090 vs. TAIR10
Match: AT2G34200.1 (AT2G34200.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-16
Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 1


Query: 88  EKVCRICHLGSE--------NESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCE 147
           E++CRICH GS+        ++S++ ELI +GC CK+ELG++H  CAE WF  RGN  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 148 ICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNE----VSLSCCWGQRFCNFLL 207
           ICG TA NV       ++  R+             +LD         SCC    F  FLL
Sbjct: 159 ICGCTAKNVTVRLMEDWSGERDN------------TLDGRRRRGRGQSCC---IFMVFLL 213

Query: 208 TCTVLAFLLPWFFR 210
           T      LL WFF+
Sbjct: 219 T----ILLLHWFFK 213

[Close]

BLAST of CSPI01G13090 vs. TAIR10
Match: AT5G59000.1 (AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-13
Identity = 59/207 (28.50%), Postives = 85/207 (41.06%), Query Frame = 1


Query: 8   SSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEM------LETSS 67
           S G+ +P++         R R  K           R  ++  K+ G +       LET+ 
Sbjct: 44  SGGVPAPEKQLHSGGKKRRTRRRK-----------RRKKKKKKKGGRDCRICHLPLETNK 103

Query: 68  QPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGIS 127
           + E       D   + E  +DE+  EE+         E E      + LGCSCK +LG++
Sbjct: 104 EAEDEDEEEEDDSDDDEDEEDEEEEEEE---------EEEEYYGLPLQLGCSCKGDLGVA 163

Query: 128 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVS 187
           H  CAE WF  +GN  CEICG  A NV   +S+  +      +  A       SL     
Sbjct: 164 HSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQ-----SLTQTEP 223

Query: 188 LSCCWGQRFCNFLLTCTVLAFLLPWFF 209
                G+   NFLL   V AF++ W F
Sbjct: 224 RGIWHGRPVMNFLLAAMVFAFVVSWLF 225

[Close]

BLAST of CSPI01G13090 vs. NCBI nr
Match: gi|778659043|ref|XP_011653704.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 3.7e-119
Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEEN KRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of CSPI01G13090 vs. NCBI nr
Match: gi|659072071|ref|XP_008463280.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 1.3e-111
Identity = 203/214 (94.86%), Postives = 209/214 (97.66%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETS 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEENSKRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of CSPI01G13090 vs. NCBI nr
Match: gi|778659045|ref|XP_011653706.1| (PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 2.9e-71
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEEN KRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNR 137
           SHRDCAEIWFMHRGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 136

[Close]

BLAST of CSPI01G13090 vs. NCBI nr
Match: gi|659072073|ref|XP_008463288.1| (PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 4.5e-64
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETS 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEENSKRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNR 137
           SHRDCAEIWFMHRGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 135

[Close]

BLAST of CSPI01G13090 vs. NCBI nr
Match: gi|720094721|ref|XP_010246453.1| (PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-33
Identity = 89/213 (41.78%), Postives = 117/213 (54.93%), Query Frame = 1


Query: 3   EQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENSKRHGVEMLETSSQ 62
           E ++ S G T P   +T++     P E + V G  G +  + N   + +   E   T + 
Sbjct: 44  EYSKTSLGQTDPAPSQTVIVIA--PAEGESVRGESGYSKTKANVLETSKVSTEERRTKAP 103

Query: 63  PESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGS--ENESITSELIHLGCSCKDELGI 122
                 C++DIK     +  E+   EKVCRICHL S  ++ +  S+LI LGC CK ELGI
Sbjct: 104 EAEKHACVVDIKCGDGELSSENWEGEKVCRICHLSSGFDHPAEVSDLITLGCGCKSELGI 163

Query: 123 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 182
           +HR CAE WF  RGNR CEICG+TA NV     + F    NERR  +SST S     +  
Sbjct: 164 AHRHCAEAWFKLRGNRCCEICGETAKNVTGVGDNRFMDEWNERRFRSSSTNS-----SSR 223

Query: 183 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
              C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 224 GRGCWRGQPFCNFLMACLVIAFILPWFFRVNMF 249

The following BLAST results are available for this feature:

BLAST of CSPI01G13090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUD1_ARATH	4.3e-06	27.83	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1	[more]

BLAST of CSPI01G13090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUV6_CUCSA	2.6e-119	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1	[more]
A0A067GE50_CITSI	3.5e-31	45.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1	[more]
M5WUB0_PRUPE	2.3e-30	39.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009296mg PE=4 SV=1	[more]
V4U9X4_9ROSI	2.9e-30	45.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1	[more]
F6HMA8_VITVI	1.5e-29	37.99	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=...	[more]

BLAST of CSPI01G13090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01070.2	3.4e-22	41.26	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	2.1e-19	40.80	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	9.7e-17	36.76	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	2.8e-16	39.55	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	5.0e-13	28.50	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of CSPI01G13090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659043\|ref\|XP_011653704.1\|	3.7e-119	99.53	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus]	[more]
gi\|659072071\|ref\|XP_008463280.1\|	1.3e-111	94.86	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo]	[more]
gi\|778659045\|ref\|XP_011653706.1\|	2.9e-71	99.26	PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus]	[more]
gi\|659072073\|ref\|XP_008463288.1\|	4.5e-64	92.65	PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo]	[more]
gi\|720094721\|ref\|XP_010246453.1\|	2.4e-33	41.78	PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13090.1	CSPI01G13090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 91..141 score: 1.
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 90..142 score: 9.9
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 83..148 score: 19
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 85..144 score: 6.6
None	No IPR available	PANTHER	PTHR23012:SF76	SUBFAMILY NOT NAMED	coord: 43..213 score: 9.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 85..145 score: 1.66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G13090	Csa1G096610	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13090	MELO3C004981	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13090	MELO3C004981.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13090	CsaV3_1G013260	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13090	Cucsa.207610	Cucumber (Gy14) v1	cgycpiB327
CSPI01G13090	CsGy1G013180	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13090	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13090	Watermelon (97103) v1	cpiwmB012
CSPI01G13090	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13090	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13090	Silver-seed gourd	carcpiB0477
CSPI01G13090	Watermelon (97103) v2	cpiwmbB034
CSPI01G13090	Wax gourd	cpiwgoB049
CSPI01G13090	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13090	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13090	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13090	Cucurbita moschata (Rifu)	cmocpiB425