Cucsa.207610 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.207610
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative
Location	scaffold01443 : 396314 .. 397423 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGGGCTTGTGATGGGGGTGTGCCACACTGGATAATACCCCTTCCTCTCGCAAATTCTTGTCTTGTCTATACAAACAACAAGTGGGAAAAGCTTATTTCAGACAGTAAGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCATCCTAAAGAAAGGCAACAATCTGATTCTCTCCCTTTTAATCTTTTAAACTCTTCTATCATTTGTTCCATACTCGTTTCATCTAACCGATCTCAAGATTATTTGAAGCAGCAGTTCAATTACCTTAGGACTCCCAGCTTCCTTCTCACTATTCAATTACCTTGGCAAATTCCATGATATGTAAACTTGTTCGTGGAGACCAAACATCGATATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAATTCCTATGACGATCTTCATCCTCTCCTCTCTTCACAGTTTCCAATAACAGATATGGTGCTCTTAATATAACTCCAATTCTGTATCATCCCTTTCTAATGGTAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA

mRNA sequence

GAGGGGCTTGTGATGGGGGTGTGCCACACTGGATAATACCCCTTCCTCTCGCAAATTCTTGTCTTGTCTATACAAACAACAAGTGGGAAAAGCTTATTTCAGACAGTAAGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCATCCTAAAGAAAGGCAACAATCTGATTCTCTCCCTTTTAATCTTTTAAACTCTTCTATCATTTGTTCCATACTCGTTTCATCTAACCGATCTCAAGATTATTTGAAGCAGCAGTTCAATTACCTTAGGACTCCCAGCTTCCTTCTCACTATTCAATTACCTTGGCAAATTCCATGATATGTAAACTTGTTCGTGGAGACCAAACATCGATATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA

Coding sequence (CDS)

ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGCCCAGATGAACCTAAGACAATTGTTGCATCGCCGTCGAGACCTCGTGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTGTGTGCGTGAGAATGAGGAGAATAGAAAGAGGCATGGAGTGGAGATGCTAGAGACCAGCTCACAGCCAGAGAGTCATCAAAACTGCATCATTGATATAAAAACCAATGGAGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAAAACGAGTCGATAACTTCAGAACTCATACACCTCGGGTGTAGCTGCAAAGATGAGCTTGGAATATCACATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACTGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAGAGGAGATTGGTAGCAAGCTCAACAGTGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCCTGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCCGATTTCTTTGGATGA

Protein sequence

MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETSSQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG*

Homology

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BLAST of Cucsa.207610 vs. Swiss-Prot
Match: SUD1_ARATH (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-07
Identity = 31/115 (26.96%), Postives = 45/115 (39.13%), Query Frame = 1


Query: 27  PREAKGVIGGEGGTCVRENEENRKRHGVEMLETSSQPESHQNCIIDIKTNGESVDDEDSS 86
           P ++  + G      V E   +         + S  P S+ +  +   T    V D+D  
Sbjct: 5   PADSLSISGAAASEVVSEPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGSRYV-DDDED 64

Query: 87  EEKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEIC 142
           EE VCRIC     N       +   C+C   +   H+DC   W  H   RQCE+C
Sbjct: 65  EEDVCRIC----RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 114

[Close]

BLAST of Cucsa.207610 vs. TrEMBL
Match: A0A0A0LUV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 6.6e-123
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

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BLAST of Cucsa.207610 vs. TrEMBL
Match: A0A067GE50_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 1


Query: 44  ENEENRKRHGVEMLETS----SQPESH-QNCIIDIKTN--GESVDDEDSSEEKVCRICHL 103
           E + N    G  ++E S    S+PE+  ++C+ID+K +  G     E+   E+VCRICHL
Sbjct: 189 EVKSNDLGSGKALVENSIRKMSKPETEKESCVIDMKCSAGGGKGFRENPDGERVCRICHL 248

Query: 104 GSEN-------ESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVR 163
           GSE         S T  LI LGC CKDELG++H DCAE WF  +GNR CEICGQ+A N+ 
Sbjct: 249 GSEQLLETTATASTTVNLIQLGCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNIT 308

Query: 164 RNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFF 214
                 F    NERR +ASS+ S            CW GQ FCNFL+ C V+AF+LPWFF
Sbjct: 309 GVGDYRFMEEWNERRFIASSSAS--------ERGGCWRGQPFCNFLMACLVIAFVLPWFF 365

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BLAST of Cucsa.207610 vs. TrEMBL
Match: V4U9X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 79/164 (48.17%), Postives = 99/164 (60.37%), Query Frame = 1


Query: 61  SQPESH-QNCIIDIKTN--GESVDDEDSSEEKVCRICHLGSEN-------ESITSELIHL 120
           S+PE+  ++C+ID+K +  G     E+   E+VCRICHLGSE         S T  LI L
Sbjct: 210 SKPETEKESCVIDMKCSAGGGKGFRENPDGERVCRICHLGSEQLLETTATASTTVNLIQL 269

Query: 121 GCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASST 180
           GC CKDELG++H DCAE WF  +GNR CEICGQ+A N+       F    NERR + SS+
Sbjct: 270 GCGCKDELGVAHSDCAEAWFKLKGNRLCEICGQSAKNITGVGDYRFMEEWNERRFIGSSS 329

Query: 181 VSTVSLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRADFF 214
            S            CW GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 330 SS--------ERGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 365

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BLAST of Cucsa.207610 vs. TrEMBL
Match: M5WUB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009296mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 86/220 (39.09%), Postives = 113/220 (51.36%), Query Frame = 1


Query: 5   NEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETSSQPE 64
           N+ S+ +   +  +T+V   S   EA  V G  G    + +E    +  VE  +      
Sbjct: 87  NKNSNNLADGNVSETLVVINSD--EAARVTGDNGRLVTKVDELGSSKVSVEESKKKVPQA 146

Query: 65  SHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSE----------NESITSELIHLGCSC 124
              + +ID++        +    E+VCRICHL SE          N S  +ELIHLGC C
Sbjct: 147 ERDSHVIDVRCGSGKGFGDKWDVERVCRICHLSSEQSPDRKIETANSSTPTELIHLGCEC 206

Query: 125 KDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTV 184
           +DELG++H  CAE WF  +GNR CEICG+TA NV  +  S F    NE  L   S +   
Sbjct: 207 RDELGVAHGHCAEAWFKLKGNRTCEICGETANNVTGHGDSRFMEEWNEETL---SGIENN 266

Query: 185 SLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRADFF 214
           SLD       CW GQ FCNFL+ C V+AF+LPWFFR   F
Sbjct: 267 SLDRN---GGCWRGQPFCNFLMACLVIAFVLPWFFRVKMF 298

[Close]

BLAST of Cucsa.207610 vs. TrEMBL
Match: F6HMA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 87/229 (37.99%), Postives = 121/229 (52.84%), Query Frame = 1


Query: 2   IEQNEGSSGITSPDEP---KTIVASPSRP--REAKGVIGGEGGTCVRENEENRKRHGVEM 61
           +++ EG    +S  EP     I+ +P+ P   E +G  GG G    +   E         
Sbjct: 15  VDRVEGGIRESSSAEPVPETVIMITPAEPDAEERRGSSGGSGSDKAKAEAEAEAE----- 74

Query: 62  LETSSQPESHQNCIIDIKTNGESVDD---EDSSEEKVCRICHLGSENES---------IT 121
            E+ +  +   +C++D+K  G        E+   E+VCRICHL S+  +          +
Sbjct: 75  TESKASVKEVNSCVVDVKCGGGGGGGGLVENWDGERVCRICHLSSDPAAEGSIATCRDAS 134

Query: 122 SELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERR 181
           ++LI LGC CKDELGISH  CAE WF  +GNR CEICG+TA NV+    + F    NERR
Sbjct: 135 ADLIQLGCGCKDELGISHPHCAEAWFKLKGNRMCEICGETANNVKGVWDNRFMEDWNERR 194

Query: 182 LVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
              SS+ S     ++    C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 195 YAGSSSNS-----SDRGGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 233

[Close]

BLAST of Cucsa.207610 vs. TAIR10
Match: AT5G01070.2 (AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-24
Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 1


Query: 71  IDIKTNGESVDDED--SSEEKVCRICHLGSENESIT-SELIHLGCSCKDELGISHRDCAE 130
           +D +T+ ESV       S EK CRICHLG E+      + + LGCSCKD+LG  H+ CA+
Sbjct: 56  LDDETDTESVASGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCAD 115

Query: 131 IWFMHRGNRQCEICGQTATNVRR--NRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCC 190
            WF  +GN+ CEIC   A N  +  N      +  N   + A +T + V+  +      C
Sbjct: 116 TWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLC 175

Query: 191 WGQRFCNFLLTCTVLAFLLPWFF 209
            G RF NFLLTC V AF++ WFF
Sbjct: 176 RGNRFLNFLLTCMVCAFVISWFF 198

[Close]

BLAST of Cucsa.207610 vs. TAIR10
Match: AT5G05830.1 (AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-20
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1


Query: 85  SSEEKVCRICHLGSENESITSEL-IHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQ 144
           S  E+ CRICH+  +  ++ S + I LGCSCK +L  +H+ CAE WF  +GN+ CE+CG 
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

Query: 145 TATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFL 204
            A NV  +        RNE   V + T+ T         S   G RF NFLL C V AF+
Sbjct: 133 IAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 192

Query: 205 LPWFF 209
           + W F
Sbjct: 193 ISWLF 197

[Close]

BLAST of Cucsa.207610 vs. TAIR10
Match: AT2G37950.1 (AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-18
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 76  NGESVDDEDSSE--EKVCRICHLGSENESITSELIHLGCSCKDELGISHRDCAEIWFMHR 135
           +   +DD+D++   EK CRICHLG E        I LGCSCKD+L ++HR CAE WF  +
Sbjct: 67  SSSEIDDDDATAPPEKDCRICHLGVETSG--GGAIELGCSCKDDLAVAHRQCAETWFKIK 126

Query: 136 GNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVSLSCCW-GQRFCN 195
           G++ CEIC   A NV    +        ER L      +         +   W  QR  N
Sbjct: 127 GDKTCEICQSVARNV-GGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVN 186

Query: 196 FLLTCTVLAFLLPWFF 209
            +L C V  F + W F
Sbjct: 187 LVLACMVFGFFISWIF 199

[Close]

BLAST of Cucsa.207610 vs. TAIR10
Match: AT2G34200.1 (AT2G34200.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 1


Query: 88  EKVCRICHLGSE--------NESITSELIHLGCSCKDELGISHRDCAEIWFMHRGNRQCE 147
           E++CRICH GS+        ++S++ ELI +GC CK+ELG++H  CAE WF  RGN  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 148 ICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNE----VSLSCCWGQRFCNFLL 207
           ICG TA NV       ++  R+             +LD         SCC    F  FLL
Sbjct: 159 ICGCTAKNVTVRLMEDWSGERDN------------TLDGRRRRGRGQSCC---IFMVFLL 213

Query: 208 TCTVLAFLLPWFFR 210
           T      LL WFF+
Sbjct: 219 T----ILLLHWFFK 213

[Close]

BLAST of Cucsa.207610 vs. TAIR10
Match: AT5G59000.1 (AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 59/207 (28.50%), Postives = 86/207 (41.55%), Query Frame = 1


Query: 8   SSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEM------LETSS 67
           S G+ +P++         R R  K           R  ++ +K+ G +       LET+ 
Sbjct: 44  SGGVPAPEKQLHSGGKKRRTRRRK-----------RRKKKKKKKGGRDCRICHLPLETNK 103

Query: 68  QPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGIS 127
           + E       D   + E  +DE+  EE+         E E      + LGCSCK +LG++
Sbjct: 104 EAEDEDEEEEDDSDDDEDEEDEEEEEEE---------EEEEYYGLPLQLGCSCKGDLGVA 163

Query: 128 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEVS 187
           H  CAE WF  +GN  CEICG  A NV   +S+  +      +  A       SL     
Sbjct: 164 HSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQ-----SLTQTEP 223

Query: 188 LSCCWGQRFCNFLLTCTVLAFLLPWFF 209
                G+   NFLL   V AF++ W F
Sbjct: 224 RGIWHGRPVMNFLLAAMVFAFVVSWLF 225

[Close]

BLAST of Cucsa.207610 vs. NCBI nr
Match: gi|778659043|ref|XP_011653704.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 9.5e-123
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of Cucsa.207610 vs. NCBI nr
Match: gi|659072071|ref|XP_008463280.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 6.2e-114
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEEN KRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 215
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of Cucsa.207610 vs. NCBI nr
Match: gi|778659045|ref|XP_011653706.1| (PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60
           MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNR 137
           SHRDCAEIWFMHRGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 136

[Close]

BLAST of Cucsa.207610 vs. NCBI nr
Match: gi|659072073|ref|XP_008463288.1| (PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEEN KRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60

Query: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNR 137
           SHRDCAEIWFMHRGNR
Sbjct: 121 SHRDCAEIWFMHRGNR 135

[Close]

BLAST of Cucsa.207610 vs. NCBI nr
Match: gi|720094721|ref|XP_010246453.1| (PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 89/213 (41.78%), Postives = 116/213 (54.46%), Query Frame = 1


Query: 3   EQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETSSQ 62
           E ++ S G T P   +T++     P E + V G  G +  + N     +   E   T + 
Sbjct: 44  EYSKTSLGQTDPAPSQTVIVIA--PAEGESVRGESGYSKTKANVLETSKVSTEERRTKAP 103

Query: 63  PESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGS--ENESITSELIHLGCSCKDELGI 122
                 C++DIK     +  E+   EKVCRICHL S  ++ +  S+LI LGC CK ELGI
Sbjct: 104 EAEKHACVVDIKCGDGELSSENWEGEKVCRICHLSSGFDHPAEVSDLITLGCGCKSELGI 163

Query: 123 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 182
           +HR CAE WF  RGNR CEICG+TA NV     + F    NERR  +SST S     +  
Sbjct: 164 AHRHCAEAWFKLRGNRCCEICGETAKNVTGVGDNRFMDEWNERRFRSSSTNS-----SSR 223

Query: 183 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 214
              C  GQ FCNFL+ C V+AF+LPWFFR + F
Sbjct: 224 GRGCWRGQPFCNFLMACLVIAFILPWFFRVNMF 249

The following BLAST results are available for this feature:

BLAST of Cucsa.207610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUD1_ARATH	6.6e-07	26.96	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1	[more]

BLAST of Cucsa.207610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUV6_CUCSA	6.6e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096610 PE=4 SV=1	[more]
A0A067GE50_CITSI	1.3e-33	45.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017863mg PE=4 SV=1	[more]
V4U9X4_9ROSI	1.1e-32	48.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015691mg PE=4 SV=1	[more]
M5WUB0_PRUPE	1.1e-32	39.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009296mg PE=4 SV=1	[more]
F6HMA8_VITVI	1.1e-32	37.99	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01500 PE=4 SV=...	[more]

BLAST of Cucsa.207610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01070.2	6.3e-24	41.26	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	1.1e-20	40.80	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.8e-18	36.76	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	3.3e-17	39.55	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.2e-16	28.50	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Cucsa.207610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659043\|ref\|XP_011653704.1\|	9.5e-123	100.00	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus]	[more]
gi\|659072071\|ref\|XP_008463280.1\|	6.2e-114	94.39	PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis melo]	[more]
gi\|778659045\|ref\|XP_011653706.1\|	1.1e-73	100.00	PREDICTED: uncharacterized protein LOC105435249 isoform X2 [Cucumis sativus]	[more]
gi\|659072073\|ref\|XP_008463288.1\|	3.1e-65	91.91	PREDICTED: uncharacterized protein LOC103501475 isoform X2 [Cucumis melo]	[more]
gi\|720094721\|ref\|XP_010246453.1\|	2.3e-36	41.78	PREDICTED: uncharacterized protein LOC104589735 isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.207610.1	Cucsa.207610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 91..141 score: 1.
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 90..142 score: 9.9
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 83..148 score: 19
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 85..144 score: 6.6
None	No IPR available	PANTHER	PTHR23012:SF76	SUBFAMILY NOT NAMED	coord: 43..213 score: 1.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 85..145 score: 1.66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.207610	Csa1G096610	Cucumber (Chinese Long) v2	cgycuB314
Cucsa.207610	MELO3C004981	Melon (DHL92) v3.5.1	cgymeB374
Cucsa.207610	CSPI01G13090	Wild cucumber (PI 183967)	cgycpiB327
Cucsa.207610	MELO3C004981.2	Melon (DHL92) v3.6.1	cgymedB371
Cucsa.207610	CsaV3_1G013260	Cucumber (Chinese Long) v3	cgycucB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.207610	Cucurbita maxima (Rimu)	cgycmaB0610
Cucsa.207610	Cucurbita maxima (Rimu)	cgycmaB0611
Cucsa.207610	Cucurbita moschata (Rifu)	cgycmoB0611
Cucsa.207610	Cucurbita moschata (Rifu)	cgycmoB0612
Cucsa.207610	Watermelon (Charleston Gray)	cgywcgB383
Cucsa.207610	Watermelon (97103) v1	cgywmB407
Cucsa.207610	Cucurbita pepo (Zucchini)	cgycpeB0582
Cucsa.207610	Cucurbita pepo (Zucchini)	cgycpeB0583
Cucsa.207610	Silver-seed gourd	carcgyB0511
Cucsa.207610	Watermelon (97103) v2	cgywmbB386
Cucsa.207610	Wax gourd	cgywgoB435