CsaV3_1G010890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At1g61870, mitochondrial
Locationchr1 : 6762914 .. 6766329 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATCATTTTTTTTCCTCCCTTTTCCTCCATCTGTACCGTTCGTTGATCATACTTTTGAAATCTCAGATTTTAACAACGGACAAGATTAAAGGTTTCACCAGTCTTACGTGTTTCGCATCTGCACTAGATTGGCTTAGCCCCCGCCTTCGTCTTCAAGTTTTTGTACAAAACCCTAGACCTCATTTCTCAAGTTTTATCTGCTGACGAGTCTCGAGCTATGGCGCTTCTCTATCGCCTCCGTTCTGCTTTCCCTTCGAACTCGACTTATATCAACTATCGTCTTCACTACCGTTCTCTCTCCACAATCCTTTCTCCTGATTCCTCTAATCCCTTGTCAGCGAAACAGAAGTCCAGGGCTGCACTGTCCCTACTGAAAACGGAGGAAAATCCTGAGCGCATTATTGATATTTGCCGAGCTGCTAGTCTCACTCCAGAATTTCATCTCGATCGTATCGCTTTCTCTGTTGCCATTTCCAAGCTCTCAAAATTTAAGCATTTCGATGGGATTCGCCGGTTCCTCGAGGAATTGAAATCTCGTCCCGATTTGAAGAACGAGCGTTTTGCTTGCCACGCTATTGTTCTTTATGGCCAGGCTAATATGCTTGATCATGCTATTAGAACTTTCAAGCAAATTGATGAACTGGGTGTGCGTCATTCGGTTAAAACGCTAAATGCATTGCTATTTGCTTGTAATTTAGCTAAGGATTACAAGGAACTGAAACGGGTTTATATGGAGTTCCCTAAGATTTATGGAATCGAACCGGATATCGATACTTATAACAGAGTGATTAAGGCGTTTTCGGAGTCGGGTTCGTCGAGTTCAGTGTCTTCGATTGTGGCAGAGATGGACAGGAAGGATGTCAAACCAAATGCGACTACTTTTGCGAATTGGCTTGCTGGGTGCTACATGGAAGAGAAGTTTGAGGATGTTGAGAAGGTCCTAAATTTGATGGAGAAATATGGCGTGCGACGTGGAGTTGCTACATATAATGCAAGAATACGCAGTCTTTGCAAATTGAAGAGATCAACAGAAGCAAAAGCTTTATTTGATGGGATGTTATCCAGAGGTATGGATCCAAACTCTGTTACATATTGTGAATTGATTCATGGATTCTGTAAGGAAGGAAATCTAGATGAAGCTAAGAGCATTTTTAAAAGAATGATCAACAGCGGTTGCCAACCAGACAGTGAGTGCTATTTCACTTTGACTTACTTCCTTTGTCGAGGAGGAGATTATGAAACAGCATTCAAGATCTGTTTGGAGAGCATGAAGAAGGGGTGGGTTCCAAATTTCAGTACAATGAAGTCTCTTGTTGATGGGCTAGTTAGTATTTCGAAGGTCGAAGAGGCAAAGCAACTTATTGGGCAAATCAAAGAGAGGTTCTCAAAGAATGTTGAGAAGTGGAGTGAAATTGAAGCTGGATTACCTCAGTGAGGAAATTCTGGGTTCCTGTGCAACTATCAATACCAAGTGAGTCTTGAGGAAAAACTAGAGAACGAGGAATTTTTTCTTGGCTTGAGCTAATCACTCTCTGCATATGTTTTACATTGATGCAGTTAATTGATTTGTCAGGAAGCTGTTATCAAAAAGCACTTTTTGTGACCCTTCTGAGAGGCTATGCTGAATTTCTACTGTCTTTTATGTTCTAGCTTTACCACTGGCTGAAATTTGTAATGCTGTAGTTGAATGAATTCTCTAACTATTGGTAGGCTCTGACCTGCTTCAAGAAGGGTGATAATGTGCTTGAAATGTTGTCGTTGACCTTCCTGTTAGGTTAGTAATTGCTGTATTGATGGAAGCTAGATTGTTTTGAGCAATTTTGTATGTCAATAAAGATGAAACTTAACATTGGATTTTATGCGTCTTCAGATTTAATCATATCTTTCTTGTTATAATTCAAAATATTCCCTCTGTGCGATGGTGAATTTGGATAGCAAGTAATTGCCTGATAAAATGCTTATGTTTCTTCTGCATGTCTTCAATTTTTTGATTTGCTACGAAAACAAATATACTTGGTGAACCATGTGTCCAAGAGAACTAATATTTTTAGAGAGAATGTTTCAAAATACAATAAAGTGCCACTAGGTAGTTTTTTTTAAACTAACGTAAATATATGTGAGATCCTGGGTTGTTTGTAGTGCCAGTTACAATTGTGTTTGCTCATTCTTGAATCTGAGGTGTATGGGGGAGGCAGGAAAGTGTAATGAAGATCACAAAATTGAAGAATTTCTTATATTTTTCACAACTATATTACATCTCTGCACTAATTCTTTTCCTCTCTCTTCTCTGTCTCATGGACCTGCAAGGAGAAACATCTGAAGAGCCACAGTTCTTCCATACAATTGAATATTTTCTCCTAAACTGGATTGTACCTTGATGATTGAAACTTGAAACAGCTAATTGGTTCCCTTTCTCTGTGGCTTGGAAATCCTAGGAAGTTCCTTCATAGAATTTGGAAACACAAACCATATAAAGCACCAGCAACATTGAACAACTCAAATTTAAGAAAAGCTGCCTTTTAGCTTCTCTTGCAGATCCTGACCTCATGATACATATTCTGAGGATTATGAAACATCCATCTGCATCTACATGTGCAAGCTATGGAAATCATTCTGAAGGATCGTATAACTCAACCCAGAAATCTTATTCATTCGATTGCTTCTCGAAGCATCAAAAGTCGAGCACATTTTTGTAACAAAGCGATTGCTGGTTAGCTTCGTCTTCCTTCGCCATGACATTAAAGATTGCCAGAAGGTGGGTGGTGAACTTCTACAGCCAGACGAAGCCATTTCAGGTCCTTGAGACCTCTGTGAGCTGATGGAGGTTTCAAGCTCAATCTTGGCAAAATAATCTATTTCCTTCTTGACGAGTGAACCAATGGTTCCTCGAGTTCCAATGGCAACAGGAGCAATTGCAGCCATTCCGTAATGGGATTTGTAGAATGTGTTGGTGGGTTTATTATGTTGCATTCGTTTTGATGTTGTAAATTTGAAGAAACGGAAAGAAGGTTTTGGGATGAAGGATGTGAGATGTTGTAGGGTCCTTTTTCCTGAAGGGGTTGTGATTTGTTTGCTTTGAATCTAAGCCAACTCCTTTGTTTTGATCTTTTTATAAAGCCATCTGTTGAAGTAAAGTGCTTTGGAAGAGATAGAGAGCAGCCTCCGCTTGAGATTTTTATATAATATTTCATTCTGAATGTGAATGCTGCGAAGAAGCATCGTAGTGTTTCCCTGTCCCCGACGATATTATGATTCCTTTTCTAATCTCTACTAATTCGGTTGCCCACATTATTTTCATCTATTTGTCAAGAAGTTTCGAGATCAGTTTCAATTTAGTTCGTGTTACAAAATATTATAAATCTACACTTGTGATTTGACTTTTGTTTTCATCTCTAAATTTTAAGAATTACATTTT

mRNA sequence

ATGGCGCTTCTCTATCGCCTCCGTTCTGCTTTCCCTTCGAACTCGACTTATATCAACTATCGTCTTCACTACCGTTCTCTCTCCACAATCCTTTCTCCTGATTCCTCTAATCCCTTGTCAGCGAAACAGAAGTCCAGGGCTGCACTGTCCCTACTGAAAACGGAGGAAAATCCTGAGCGCATTATTGATATTTGCCGAGCTGCTAGTCTCACTCCAGAATTTCATCTCGATCGTATCGCTTTCTCTGTTGCCATTTCCAAGCTCTCAAAATTTAAGCATTTCGATGGGATTCGCCGGTTCCTCGAGGAATTGAAATCTCGTCCCGATTTGAAGAACGAGCGTTTTGCTTGCCACGCTATTGTTCTTTATGGCCAGGCTAATATGCTTGATCATGCTATTAGAACTTTCAAGCAAATTGATGAACTGGGTGTGCGTCATTCGGTTAAAACGCTAAATGCATTGCTATTTGCTTGTAATTTAGCTAAGGATTACAAGGAACTGAAACGGGTTTATATGGAGTTCCCTAAGATTTATGGAATCGAACCGGATATCGATACTTATAACAGAGTGATTAAGGCGTTTTCGGAGTCGGGTTCGTCGAGTTCAGTGTCTTCGATTGTGGCAGAGATGGACAGGAAGGATGTCAAACCAAATGCGACTACTTTTGCGAATTGGCTTGCTGGGTGCTACATGGAAGAGAAGTTTGAGGATGTTGAGAAGGTCCTAAATTTGATGGAGAAATATGGCGTGCGACGTGGAGTTGCTACATATAATGCAAGAATACGCAGTCTTTGCAAATTGAAGAGATCAACAGAAGCAAAAGCTTTATTTGATGGGATGTTATCCAGAGGTATGGATCCAAACTCTGTTACATATTGTGAATTGATTCATGGATTCTGTAAGGAAGGAAATCTAGATGAAGCTAAGAGCATTTTTAAAAGAATGATCAACAGCGGTTGCCAACCAGACAGTGAGTGCTATTTCACTTTGACTTACTTCCTTTGTCGAGGAGGAGATTATGAAACAGCATTCAAGATCTGTTTGGAGAGCATGAAGAAGGGGTGGGTTCCAAATTTCAGTACAATGAAGTCTCTTGTTGATGGGCTAGTTAGTATTTCGAAGGTCGAAGAGGCAAAGCAACTTATTGGGCAAATCAAAGAGAGGTTCTCAAAGAATGTTGAGAAGTGGAGTGAAATTGAAGCTGGATTACCTCAGTGA

Coding sequence (CDS)

ATGGCGCTTCTCTATCGCCTCCGTTCTGCTTTCCCTTCGAACTCGACTTATATCAACTATCGTCTTCACTACCGTTCTCTCTCCACAATCCTTTCTCCTGATTCCTCTAATCCCTTGTCAGCGAAACAGAAGTCCAGGGCTGCACTGTCCCTACTGAAAACGGAGGAAAATCCTGAGCGCATTATTGATATTTGCCGAGCTGCTAGTCTCACTCCAGAATTTCATCTCGATCGTATCGCTTTCTCTGTTGCCATTTCCAAGCTCTCAAAATTTAAGCATTTCGATGGGATTCGCCGGTTCCTCGAGGAATTGAAATCTCGTCCCGATTTGAAGAACGAGCGTTTTGCTTGCCACGCTATTGTTCTTTATGGCCAGGCTAATATGCTTGATCATGCTATTAGAACTTTCAAGCAAATTGATGAACTGGGTGTGCGTCATTCGGTTAAAACGCTAAATGCATTGCTATTTGCTTGTAATTTAGCTAAGGATTACAAGGAACTGAAACGGGTTTATATGGAGTTCCCTAAGATTTATGGAATCGAACCGGATATCGATACTTATAACAGAGTGATTAAGGCGTTTTCGGAGTCGGGTTCGTCGAGTTCAGTGTCTTCGATTGTGGCAGAGATGGACAGGAAGGATGTCAAACCAAATGCGACTACTTTTGCGAATTGGCTTGCTGGGTGCTACATGGAAGAGAAGTTTGAGGATGTTGAGAAGGTCCTAAATTTGATGGAGAAATATGGCGTGCGACGTGGAGTTGCTACATATAATGCAAGAATACGCAGTCTTTGCAAATTGAAGAGATCAACAGAAGCAAAAGCTTTATTTGATGGGATGTTATCCAGAGGTATGGATCCAAACTCTGTTACATATTGTGAATTGATTCATGGATTCTGTAAGGAAGGAAATCTAGATGAAGCTAAGAGCATTTTTAAAAGAATGATCAACAGCGGTTGCCAACCAGACAGTGAGTGCTATTTCACTTTGACTTACTTCCTTTGTCGAGGAGGAGATTATGAAACAGCATTCAAGATCTGTTTGGAGAGCATGAAGAAGGGGTGGGTTCCAAATTTCAGTACAATGAAGTCTCTTGTTGATGGGCTAGTTAGTATTTCGAAGGTCGAAGAGGCAAAGCAACTTATTGGGCAAATCAAAGAGAGGTTCTCAAAGAATGTTGAGAAGTGGAGTGAAATTGAAGCTGGATTACCTCAGTGA

Protein sequence

MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGVRRGVATYNARIRSLCKLKRSTEAKALFDGMLSRGMDPNSVTYCELIHGFCKEGNLDEAKSIFKRMINSGCQPDSECYFTLTYFLCRGGDYETAFKICLESMKKGWVPNFSTMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ
Homology
[Close]
BLAST of CsaV3_1G010890 vs. NCBI nr
Match: XP_011652746.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucumis sativus] >KGN64535.1 hypothetical protein Csa_1G063590 [Cucumis sativus])

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER
Sbjct: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI
Sbjct: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360

Query: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
           TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ
Sbjct: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 405

[Close]
BLAST of CsaV3_1G010890 vs. NCBI nr
Match: XP_008441198.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 9.1e-147
Identity = 377/405 (93.09%), Postives = 387/405 (95.56%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALLYRLRSAF SNSTYINY LHYRSLSTILSPDSS PLSAKQKSRAALSLLKTEENPER
Sbjct: 1   MALLYRLRSAFSSNSTYINYHLHYRSLSTILSPDSSTPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPEFHLDRIAFSVAISKLSK KH+DGI RFLEELKSRPDLKNERFACH I
Sbjct: 61  IIDICRAAALTPEFHLDRIAFSVAISKLSKSKHYDGIHRFLEELKSRPDLKNERFACHVI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
            LYGQANMLDHAIRTFKQIDELGVRHSVK LN+LLFACN+AKDYKELKRV+MEFPKIYGI
Sbjct: 121 ALYGQANMLDHAIRTFKQIDELGVRHSVKLLNSLLFACNVAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRK+VKPNAT+FANWLAGCYMEEK+EDVEK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKNVKPNATSFANWLAGCYMEEKYEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VL LMEKYGVRRGVATYNARI+SLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VLKLMEKYGVRRGVATYNARIQSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
                 DGLVSISKVEEAKQLIGQIKERFS NVEKWSE+EAGLPQ
Sbjct: 361 XXXXXXDGLVSISKVEEAKQLIGQIKERFSNNVEKWSEMEAGLPQ 405

[Close]
BLAST of CsaV3_1G010890 vs. NCBI nr
Match: XP_023542690.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 504.6 bits (1298), Expect = 3.1e-139
Identity = 363/405 (89.63%), Postives = 381/405 (94.07%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MA LYRLR AFPSN+TYINYRLHYRSLSTILSPDS+NPLSAKQKSRAALSLLK+E+NPER
Sbjct: 1   MAFLYRLRHAFPSNATYINYRLHYRSLSTILSPDSTNPLSAKQKSRAALSLLKSEDNPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPE HLDRIAFSVAISKLS+ KHFDGIRRFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           VLYGQANMLDHAI TFKQI ELGV HSVK+LNALLFACNLAKDYKELKRV+MEFPKIYGI
Sbjct: 121 VLYGQANMLDHAISTFKQIGELGVCHSVKSLNALLFACNLAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPD+DTYNRVIKAFSESGSSS+V SI+AEMDRKD+KPNATTFANWLAGCY EEK+EDVEK
Sbjct: 181 EPDLDTYNRVIKAFSESGSSSAVYSILAEMDRKDIKPNATTFANWLAGCYKEEKYEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           V+ LMEKYGV RGV+TYNARI+SLC   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VIKLMEKYGVWRGVSTYNARIQSLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
                  GLVSISKV+EAKQLIGQIKERFSKNVE W+EIEAGLPQ
Sbjct: 361 XXXXXXXGLVSISKVDEAKQLIGQIKERFSKNVETWNEIEAGLPQ 405

[Close]
BLAST of CsaV3_1G010890 vs. NCBI nr
Match: XP_022140127.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Momordica charantia])

HSP 1 Score: 475.3 bits (1222), Expect = 2.0e-130
Identity = 238/263 (90.49%), Postives = 252/263 (95.82%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALL RLR AFPSNSTY+NYRLHYRSLS+ILSPDS+NP+SAKQKSRAALSLLK E+NPER
Sbjct: 1   MALLNRLRHAFPSNSTYMNYRLHYRSLSSILSPDSANPMSAKQKSRAALSLLKAEDNPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPE HLDRIAFSVAISKLS+ KHFDGIRRFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPELHLDRIAFSVAISKLSESKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           VLYGQANMLDHAIR FKQIDELGVRHSVK+LNALLFACNLAKDYKELKRVYMEFPKIYGI
Sbjct: 121 VLYGQANMLDHAIRAFKQIDELGVRHSVKSLNALLFACNLAKDYKELKRVYMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPD++TYNRVIKAFSESGSSS+V SIVAEMDRKDVKPNATTFANWLAGCY EEK+EDVEK
Sbjct: 181 EPDLETYNRVIKAFSESGSSSAVYSIVAEMDRKDVKPNATTFANWLAGCYKEEKYEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRS 264
           V+ LMEKYGVRRGV  YNARI+S
Sbjct: 241 VIKLMEKYGVRRGVGIYNARIQS 263

[Close]
BLAST of CsaV3_1G010890 vs. NCBI nr
Match: XP_023001276.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita maxima] >XP_023001277.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 434.9 bits (1117), Expect = 3.1e-118
Identity = 217/240 (90.42%), Postives = 231/240 (96.25%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALLYRLR+ FPSNSTYIN+RLHYR LSTILSPDS+NPLSAKQKSRAALSLLK E+NPER
Sbjct: 1   MALLYRLRNVFPSNSTYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPE HLDRIAFSVAISKLS+ KHFDGIR FLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           +LYGQANMLDHAIRTFKQIDELGVRHSVK+LNALLFACN+AKDYKELKRV++EFPKIYGI
Sbjct: 121 ILYGQANMLDHAIRTFKQIDELGVRHSVKSLNALLFACNVAKDYKELKRVFIEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPD+DTYNRVIKAFSE GSSS+V SIVAEMDRKDVKPNATTFANWLAGCY EEK+EDVEK
Sbjct: 181 EPDLDTYNRVIKAFSELGSSSAVYSIVAEMDRKDVKPNATTFANWLAGCYKEEKYEDVEK 240

[Close]
BLAST of CsaV3_1G010890 vs. TAIR10
Match: AT1G61870.1 (pentatricopeptide repeat 336)

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-65
Identity = 129/215 (60.00%), Postives = 171/215 (79.53%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSL---STILSPDSSNPLSAKQKSRAALSLLKTEEN 60
           MALL R+RS+  S   ++N     RSL   STILSPDS  PL++K+KS+AALSLLK+E++
Sbjct: 1   MALLSRIRSS-TSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKD 60

Query: 61  PERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEE-LKSRPDLKNERFA 120
           P+RI++ICRAASLTP+  +DRIAFS A+  L++ KHF  +   L+  +++RPDLK+ERFA
Sbjct: 61  PDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFA 120

Query: 121 CHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPK 180
            HAIVLY QANMLDH++R F+ +++  +  +VK+LNALLFAC +AKDYKE KRVY+E PK
Sbjct: 121 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 180

Query: 181 IYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMD 212
           +YGIEPD++TYNR+IK F ESGS+SS  SIVAEM+
Sbjct: 181 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEME 214

[Close]
BLAST of CsaV3_1G010890 vs. TAIR10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-65
Identity = 231/406 (56.90%), Postives = 296/406 (72.91%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQ-KSRAALSLLKTEENPE 60
           MA L+R+R    ++   +     +R  S+  S  +   L++KQ KSR  LSLLK+E NP+
Sbjct: 1   MAFLFRIR----TSEFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPD 60

Query: 61  RIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEE-LKSRPDLKNERFACH 120
           RI++ICR+ SL+P++H+DRI FSVA+  L++ KHF  + + L+  ++++PD K+E FA  
Sbjct: 61  RILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVR 120

Query: 121 AIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIY 180
           AI+LYG+ANMLD +I+TF+ +++  +  +VK+LNALLFAC +AKDYKE  RVY+E PK+Y
Sbjct: 121 AIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMY 180

Query: 181 GIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDV 240
           GIEPD++TYNR+I+   ESGS+SS  SIVAEM+RK +KP A +F   + G Y EEKF++V
Sbjct: 181 GIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEV 240

Query: 241 EKVLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
            KV                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMEKNWVPS 360

Query: 361 FSTMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLP 405
           FS MK LV+GL S SKV+EAK+LI  +KE+F++NV+ W+E+EA LP
Sbjct: 361 FSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402

[Close]
BLAST of CsaV3_1G010890 vs. TAIR10
Match: AT2G18520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-23
Identity = 71/256 (27.73%), Postives = 127/256 (49.61%), Query Frame = 0 

Query: 13  SNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTP 72
           S+  Y+ +   + + + I S  ++ P  A   S+A   L K ++ P++ + I ++ S   
Sbjct: 3   SSRLYLRFLRRFSTATGIDSQTTAYP-GAITMSKAKSKLRKVQD-PDKALAIYKSVSNNS 62

Query: 73  EFHL-DRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDH 132
              L  R A  + + +L+K + F  I   +E  K+ P +K E F    I  YG+A+M DH
Sbjct: 63  TSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDH 122

Query: 133 AIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIY-GIEPDIDTYNRV 192
           A++ F+++D+LG   +V + NALL AC  +  ++ + +++ EFP+ Y  I PD  +Y  +
Sbjct: 123 AMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGML 182

Query: 193 IKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGV 252
           IK++ +SG       I+ +M+ K V+     F   L   Y     ++ E +   M   G 
Sbjct: 183 IKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGC 242

Query: 253 RRGVATYNARIRSLCK 267
                 YN R+ +  K
Sbjct: 243 DLDNTVYNVRLMNAAK 256

[Close]
BLAST of CsaV3_1G010890 vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-22
Identity = 72/254 (28.35%), Postives = 120/254 (47.24%), Query Frame = 0 

Query: 15  STYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDI-CRAASLTPE 74
           S+ I+ RL  R  S      ++ P S K     A S L+ E +P++ + I    +  +  
Sbjct: 3   SSRISLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSAS 62

Query: 75  FHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAI 134
               R A  + + +L+K + F  I   +E  K+ P +K E F    I  YGQA+M +HA+
Sbjct: 63  PVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAM 122

Query: 135 RTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYG-IEPDIDTYNRVIK 194
           RTF+Q+D+ G   S  + NALL AC  +K++ ++ +++      Y  I PD  +Y  +IK
Sbjct: 123 RTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRYNKIIPDKISYGILIK 182

Query: 195 AFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGVRR 254
           ++ +SG+      I+ +M  K ++     F   L+  Y + + E  +             
Sbjct: 183 SYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNXXXXXXXXXXXX 242

Query: 255 GVATYNARIRSLCK 267
             A YN RI S  K
Sbjct: 243 XXAAYNVRIMSAQK 256

[Close]
BLAST of CsaV3_1G010890 vs. TAIR10
Match: AT1G80150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-20
Identity = 62/215 (28.84%), Postives = 102/215 (47.44%), Query Frame = 0 

Query: 31  LSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSK 90
           +S +S+     K     AL  LK+E +PE++ ++ +A +       +R AF   +S+L+ 
Sbjct: 24  VSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAG 83

Query: 91  FKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKT 150
               D I   LE  K+ P  + E F    I+LYG+A M   A+ TF  +D  G + SVK+
Sbjct: 84  AGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKS 143

Query: 151 LNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEM 210
            NA L   +   D   +     + P  YGI+ D  ++N  IK+F E G        + EM
Sbjct: 144 FNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREM 203

Query: 211 DRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLM 246
           ++  + P+  T+   ++  Y  E+      + NLM
Sbjct: 204 EKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLM 238

[Close]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match: sp|Q8LE47|PPR87_ARATH (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 3.0e-64
Identity = 129/215 (60.00%), Postives = 171/215 (79.53%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSL---STILSPDSSNPLSAKQKSRAALSLLKTEEN 60
           MALL R+RS+  S   ++N     RSL   STILSPDS  PL++K+KS+AALSLLK+E++
Sbjct: 1   MALLSRIRSS-TSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKD 60

Query: 61  PERIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEE-LKSRPDLKNERFA 120
           P+RI++ICRAASLTP+  +DRIAFS A+  L++ KHF  +   L+  +++RPDLK+ERFA
Sbjct: 61  PDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFA 120

Query: 121 CHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPK 180
            HAIVLY QANMLDH++R F+ +++  +  +VK+LNALLFAC +AKDYKE KRVY+E PK
Sbjct: 121 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 180

Query: 181 IYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMD 212
           +YGIEPD++TYNR+IK F ESGS+SS  SIVAEM+
Sbjct: 181 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEME 214

[Close]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match: sp|Q9SAB4|PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.0e-64
Identity = 231/406 (56.90%), Postives = 296/406 (72.91%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQ-KSRAALSLLKTEENPE 60
           MA L+R+R    ++   +     +R  S+  S  +   L++KQ KSR  LSLLK+E NP+
Sbjct: 1   MAFLFRIR----TSEFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPD 60

Query: 61  RIIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEE-LKSRPDLKNERFACH 120
           RI++ICR+ SL+P++H+DRI FSVA+  L++ KHF  + + L+  ++++PD K+E FA  
Sbjct: 61  RILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVR 120

Query: 121 AIVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIY 180
           AI+LYG+ANMLD +I+TF+ +++  +  +VK+LNALLFAC +AKDYKE  RVY+E PK+Y
Sbjct: 121 AIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMY 180

Query: 181 GIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDV 240
           GIEPD++TYNR+I+   ESGS+SS  SIVAEM+RK +KP A +F   + G Y EEKF++V
Sbjct: 181 GIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEV 240

Query: 241 EKVLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
            KV                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMEKNWVPS 360

Query: 361 FSTMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLP 405
           FS MK LV+GL S SKV+EAK+LI  +KE+F++NV+ W+E+EA LP
Sbjct: 361 FSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402

[Close]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-22
Identity = 71/256 (27.73%), Postives = 127/256 (49.61%), Query Frame = 0 

Query: 13  SNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTP 72
           S+  Y+ +   + + + I S  ++ P  A   S+A   L K ++ P++ + I ++ S   
Sbjct: 3   SSRLYLRFLRRFSTATGIDSQTTAYP-GAITMSKAKSKLRKVQD-PDKALAIYKSVSNNS 62

Query: 73  EFHL-DRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDH 132
              L  R A  + + +L+K + F  I   +E  K+ P +K E F    I  YG+A+M DH
Sbjct: 63  TSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDH 122

Query: 133 AIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIY-GIEPDIDTYNRV 192
           A++ F+++D+LG   +V + NALL AC  +  ++ + +++ EFP+ Y  I PD  +Y  +
Sbjct: 123 AMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGML 182

Query: 193 IKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGV 252
           IK++ +SG       I+ +M+ K V+     F   L   Y     ++ E +   M   G 
Sbjct: 183 IKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGC 242

Query: 253 RRGVATYNARIRSLCK 267
                 YN R+ +  K
Sbjct: 243 DLDNTVYNVRLMNAAK 256

[Close]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-21
Identity = 72/254 (28.35%), Postives = 120/254 (47.24%), Query Frame = 0 

Query: 15  STYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDI-CRAASLTPE 74
           S+ I+ RL  R  S      ++ P S K     A S L+ E +P++ + I    +  +  
Sbjct: 3   SSRISLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSAS 62

Query: 75  FHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAI 134
               R A  + + +L+K + F  I   +E  K+ P +K E F    I  YGQA+M +HA+
Sbjct: 63  PVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAM 122

Query: 135 RTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYG-IEPDIDTYNRVIK 194
           RTF+Q+D+ G   S  + NALL AC  +K++ ++ +++      Y  I PD  +Y  +IK
Sbjct: 123 RTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRYNKIIPDKISYGILIK 182

Query: 195 AFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGVRR 254
           ++ +SG+      I+ +M  K ++     F   L+  Y + + E  +             
Sbjct: 183 SYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNXXXXXXXXXXXX 242

Query: 255 GVATYNARIRSLCK 267
             A YN RI S  K
Sbjct: 243 XXAAYNVRIMSAQK 256

[Close]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match: sp|Q8GW57|PP134_ARATH (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-19
Identity = 62/215 (28.84%), Postives = 102/215 (47.44%), Query Frame = 0 

Query: 31  LSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSVAISKLSK 90
           +S +S+     K     AL  LK+E +PE++ ++ +A +       +R AF   +S+L+ 
Sbjct: 24  VSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAG 83

Query: 91  FKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQIDELGVRHSVKT 150
               D I   LE  K+ P  + E F    I+LYG+A M   A+ TF  +D  G + SVK+
Sbjct: 84  AGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKS 143

Query: 151 LNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEM 210
            NA L   +   D   +     + P  YGI+ D  ++N  IK+F E G        + EM
Sbjct: 144 FNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREM 203

Query: 211 DRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLM 246
           ++  + P+  T+   ++  Y  E+      + NLM
Sbjct: 204 EKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLM 238

[Close]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match: tr|A0A0A0LRL9|A0A0A0LRL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063590 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 7.8e-163
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER
Sbjct: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI
Sbjct: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360

Query: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
           TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ
Sbjct: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 405

[Close]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match: tr|A0A1S3B2W7|A0A1S3B2W7_CUCME (pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485402 PE=4 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 6.0e-147
Identity = 377/405 (93.09%), Postives = 387/405 (95.56%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MALLYRLRSAF SNSTYINY LHYRSLSTILSPDSS PLSAKQKSRAALSLLKTEENPER
Sbjct: 1   MALLYRLRSAFSSNSTYINYHLHYRSLSTILSPDSSTPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPEFHLDRIAFSVAISKLSK KH+DGI RFLEELKSRPDLKNERFACH I
Sbjct: 61  IIDICRAAALTPEFHLDRIAFSVAISKLSKSKHYDGIHRFLEELKSRPDLKNERFACHVI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
            LYGQANMLDHAIRTFKQIDELGVRHSVK LN+LLFACN+AKDYKELKRV+MEFPKIYGI
Sbjct: 121 ALYGQANMLDHAIRTFKQIDELGVRHSVKLLNSLLFACNVAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRK+VKPNAT+FANWLAGCYMEEK+EDVEK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKNVKPNATSFANWLAGCYMEEKYEDVEK 240

Query: 241 VLNLMEKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VL LMEKYGVRRGVATYNARI+SLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VLKLMEKYGVRRGVATYNARIQSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFS 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 TMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
                 DGLVSISKVEEAKQLIGQIKERFS NVEKWSE+EAGLPQ
Sbjct: 361 XXXXXXDGLVSISKVEEAKQLIGQIKERFSNNVEKWSEMEAGLPQ 405

[Close]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match: tr|A0A067JLA1|A0A067JLA1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21241 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.2e-92
Identity = 283/411 (68.86%), Postives = 325/411 (79.08%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           MAL  RLR         ++   + R  STILSPDS  PLS+K+K+RAALSLLK E NPE+
Sbjct: 1   MALFSRLR--------ILSLTRNQRHFSTILSPDSKTPLSSKEKTRAALSLLKVENNPEK 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELK-SRPDLK-NERFACH 120
           I++IC+AASLTPE HLDRI FS AISKLSK  +F  IR+FL++++ SRPDL+ ++RFA H
Sbjct: 61  IVEICKAASLTPETHLDRIVFSEAISKLSKSNNFSYIRQFLDDVRSSRPDLRSSQRFAAH 120

Query: 121 AIVLYGQANMLDHAIRTFKQ--IDELGVR-HSVKTLNALLFACNLAKDYKELKRVYMEFP 180
           AIVLYGQANM+D AIRTFK+   D +G    SVK LNALLFAC LAK+Y E+ R+Y+EFP
Sbjct: 121 AIVLYGQANMIDDAIRTFKEYHTDVIGSGIGSVKALNALLFACILAKNYSEVNRIYLEFP 180

Query: 181 KIYGIEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKF 240
           KIY IEP+ DTYN VIKAF ESGSSSS  S++AEM+RK VKPNATTF N LAG Y EEKF
Sbjct: 181 KIYNIEPNYDTYNTVIKAFCESGSSSSGYSVLAEMNRKGVKPNATTFGNLLAGFYKEEKF 240

Query: 241 EDVEKVLNLM-EKYGVRRGVATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           EDV KVL +M +KYG+R GV+TYN RI+SLCKLK                XXXXXXXXXX
Sbjct: 241 EDVGKVLEIMKQKYGIRPGVSTYNTRIQSLCKLKRATEAKALLDGMLSRKXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXFSTMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 406
           XXXXF  MKSLV+GL  + KVEEAK L+ Q+K+RF+KNV+ W EIEAGL Q
Sbjct: 361 XXXXFGIMKSLVNGLAGVGKVEEAKGLVAQMKKRFTKNVQLWDEIEAGLAQ 403

[Close]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match: tr|A0A1J7H217|A0A1J7H217_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06820 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.7e-88
Identity = 170/269 (63.20%), Postives = 214/269 (79.55%), Query Frame = 0 

Query: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60
           M+LL RLR  F +         H+   +TILSP+S+ PL+ KQK+R A+SL+KTE+NPER
Sbjct: 1   MSLLTRLRHIFQNR--------HFS--TTILSPNSATPLTTKQKTRTAISLIKTEKNPER 60

Query: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120
           I++ICRAA+LTP+  LDR+AFS+A+SKL+   HFDGIRRFL+ELK+RPDL+NERF  HAI
Sbjct: 61  ILEICRAAALTPDSQLDRVAFSLAVSKLTAANHFDGIRRFLDELKTRPDLRNERFLSHAI 120

Query: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180
           VLYG+A MLDHAIRTFK+ ++  V  SVK+LN+LLFA   AK+YKE+ R+Y+EFPKIY I
Sbjct: 121 VLYGRATMLDHAIRTFKESEDFNVTRSVKSLNSLLFAAIAAKNYKEVSRIYLEFPKIYSI 180

Query: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEK 240
           EPD+DTYN VIK+F ESGS  SV SI+ EMDRK +KPNATTF+  ++GCY EEKFE+V K
Sbjct: 181 EPDLDTYNLVIKSFCESGSCGSVYSILDEMDRKSIKPNATTFSTLISGCYKEEKFEEVGK 240

Query: 241 VLNLM-EKYGVRRGVATYNARIRSLCKLK 269
           VL LM EKY +  G++TYN RI+ LCKLK
Sbjct: 241 VLKLMEEKYRMYPGLSTYNVRIQGLCKLK 259

[Close]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match: tr|A0A1S2XA79|A0A1S2XA79_CICAR (pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cicer arietinum OX=3827 GN=LOC101489542 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.0e-86
Identity = 261/389 (67.10%), Postives = 317/389 (81.49%), Query Frame = 0 

Query: 20  YRLHY--RSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLD 79
           YRL +  R  STILSP+SS PL++KQKSRAAL LLK+E NPE I++ICRAASL+PE HLD
Sbjct: 3   YRLRHAIRHYSTILSPNSSTPLTSKQKSRAALRLLKSETNPETIVEICRAASLSPESHLD 62

Query: 80  RIAFSVAISKLSKFKHFDGIRRFLEE-LKSRPDLKNERFACHAIVLYGQANMLDHAIRTF 139
           R+AFS A++KL+  K+FD +R+FL+E L++RPDL+NERF  HAIVL+GQANML  A+ TF
Sbjct: 63  RLAFSRAVNKLTAAKNFDAVRQFLDELLQTRPDLQNERFISHAIVLFGQANMLHQAMNTF 122

Query: 140 KQIDE-LGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFS 199
             + E L +  SVK+LNAL+FA  +AK++KE+ R+Y+EFPKI+ I+PD++TYN VIK+F+
Sbjct: 123 NHMRENLNIVPSVKSLNALIFASLVAKNHKEVTRIYLEFPKIHSIQPDVETYNLVIKSFA 182

Query: 200 ESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEK-YGVRRGV 259
           ESGS+SSV SI+ EMDR  VKPN TTF N + G Y EEKFE+V K+ NLMEK YG+   +
Sbjct: 183 ESGSASSVFSILDEMDRNSVKPNVTTFNNSIGGFYNEEKFEEVGKLTNLMEKRYGLYPNL 242

Query: 260 ATYNARIRSLCKLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 319
           +TYN RI+SLCKLK               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 243 STYNVRIQSLCKLKRSSEAKALFQGMISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302

Query: 320 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSTMKSLVDGLVSISK 379
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   F+TMK LV+GLVS+SK
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPNFTTMKKLVNGLVSVSK 362

Query: 380 VEEAKQLIGQIKERFSKNVEKWSEIEAGL 404
           V++AK+LI  IKE+F++N +KWSEIE GL
Sbjct: 363 VDDAKELIKVIKEKFAENSDKWSEIEEGL 391

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652746.11.2e-162100.00PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial ... [more]
XP_008441198.19.1e-14793.09PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial ... [more]
XP_023542690.13.1e-13989.63pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur... [more]
XP_022140127.12.0e-13090.49pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Momordica ... [more]
XP_023001276.13.1e-11890.42pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur... [more]
BLAST of CsaV3_1G010890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G61870.11.6e-6560.00pentatricopeptide repeat 336[more]
AT1G11630.12.8e-6556.90Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G18520.13.5e-2327.73Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G36680.13.8e-2228.35Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G80150.12.1e-2028.84Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_1G010890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LE47|PPR87_ARATH3.0e-6460.00Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop... [more]
sp|Q9SAB4|PPR33_ARATH5.0e-6456.90Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidop... [more]
sp|Q9ZU67|PP162_ARATH6.2e-2227.73Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidop... [more]
sp|Q9M065|PP352_ARATH6.9e-2128.35Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop... [more]
sp|Q8GW57|PP134_ARATH3.8e-1928.84Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_1G010890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRL9|A0A0A0LRL9_CUCSA7.8e-163100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063590 PE=4 SV=1[more]
tr|A0A1S3B2W7|A0A1S3B2W7_CUCME6.0e-14793.09pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cucumis ... [more]
tr|A0A067JLA1|A0A067JLA1_JATCU4.2e-9268.86Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21241 PE=4 SV=1[more]
tr|A0A1J7H217|A0A1J7H217_LUPAN3.7e-8863.20Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06820 PE=4 S... [more]
tr|A0A1S2XA79|A0A1S2XA79_CICAR2.0e-8667.10pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cicer ar... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010890.1CsaV3_1G010890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 77..247
e-value: 6.0E-25
score: 90.2
coord: 248..402
e-value: 3.8E-34
score: 120.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 59..396
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 186..219
e-value: 0.0013
score: 16.7
coord: 290..324
e-value: 1.6E-11
score: 41.7
coord: 256..288
e-value: 4.3E-8
score: 30.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 361..388
e-value: 1.1
score: 9.5
coord: 221..250
e-value: 0.99
score: 9.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 136..194
e-value: 1.7E-8
score: 34.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 253..301
e-value: 6.3E-13
score: 48.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 358..388
score: 7.059
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 112..146
score: 5.788
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 147..182
score: 6.248
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 183..217
score: 9.942
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 218..252
score: 7.728
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 288..322
score: 14.294
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 323..357
score: 8.561
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 77..107
score: 6.259
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 253..287
score: 11.071
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..397
NoneNo IPR availablePANTHERPTHR24015:SF579SUBFAMILY NOT NAMEDcoord: 2..397

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010890CSPI01G10830Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010890Cucsa.085960Cucumber (Gy14) v1cgycucB089
CsaV3_1G010890CmaCh18G002480Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010890CmoCh18G002800Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010890Cp4.1LG20g03740Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010890Cp4.1LG09g09080Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010890CsGy1G010710Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010890Carg06855Silver-seed gourdcarcucB0529
CsaV3_1G010890Carg07537Silver-seed gourdcarcucB1049
CsaV3_1G010890Cla019393Watermelon (97103) v1cucwmB013
CsaV3_1G010890ClCG03G004860Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010890Lsi02G006120Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010890Cla97C03G056010Watermelon (97103) v2cucwmbB030
CsaV3_1G010890Bhi08G001523Wax gourdcucwgoB037
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010890Wax gourdcucwgoB026
CsaV3_1G010890Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010890Silver-seed gourdcarcucB0672
CsaV3_1G010890Silver-seed gourdcarcucB0969
CsaV3_1G010890Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010890Cucumber (Gy14) v1cgycucB018
CsaV3_1G010890Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010890Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010890Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010890Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010890Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010890Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010890Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010890Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010890Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010890Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010890Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010890Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010890Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010890Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010890Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010890Watermelon (97103) v1cucwmB050
CsaV3_1G010890Watermelon (97103) v2cucwmbB001