Carg07537 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07537
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_024 : 151625 .. 152842 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTTCTTTATCGCCTCCGCAATGCTTTCCCTTCGAATTGGAGTTACATCAACCATCGTCTTCACTACCGTTGTCTATCGACAATCCTTTCCCCTGATTCCACTAATCCTTTGTCAGCTAAACAGAAATCGAGGGCCGCATTGTCCCTACTGAAAGTTGAGGACAATCCTGAGCGTATAATCGATATTTGCCGAGCCGCTACTCTCACTCCAGAATCACATCTCGATCGCATCGCTTTCTCTGTTGCTATTTCTAAGCTTTCAGAGTCCAAGCACTTCGATGGAATTCGCCTGTTCCTCGAGGAGTTGAAGTCTCGTCCCGACTTGAAAAACGAGCGTTTTGCTTGCCACGCTATTATTCTCTATGGCCAGGCCAATATGCTCGATCATGCTATTCGCACTTTCAAGCAAATTGATGAACTGGGTATGCGTCATTCGGTTAAATCGCTTAATGCATTGCTATTTGCTTGTAATGTAGCTAAGGACTATAAGGAACTGAAGCGGGTTTTTATGGAGTTCCCTAAGATTTACGGAATCGAACCAGATCTCGATACTTATAACAGAGTAATCAAGGCGTTCTCGGAGTCGGGTTCCTCGAGTGCAGTGTTTTCAATTGTGGCGGAAATGGACAGGAAGGGTGTCAAACCAAATGCGACTACTTTTGCGAACTGGCTTGCTGGATGCTATAAGGAAGAGAAGTACGAGGATGTTGAGAAAGTCATAAATTTGATGGGAAAATATGGTGTGCGGCGTGGAGTTAGTACATATAATGCAAGAATACTGAGTCTTTGTAAATTGAAGAAATCATCAGAGGCGAAGGCTTTATTTGATGGGATGTTGTCGAGAGGTATGAAACCAAACTCTGTTACATACTGTAAGTTGATTCATGGATTCTGTAGGGAAGGAAATCTGGATGAAGCTAAGAATCTTTTTAAGAGAATGATCAACAGCGGTTGCCAACCTGACAGTGATTGCTATTTCACTTTGGTTTATTTCCTTTGTCGAGGAGGAGATTATGATGCCGCTTTCAAGATCTGTGGCGAAAGCATGGAGAAGGGGTGGGTTCCAAATATCACTACGATGAAGTCTCTTGTTGATGGATTAGTTAGCATCTCGAAGGTCGACGAGGCAAAGCAACTTATTGGGAAAATCAAGGAGAGGTTCTCAAAGAATGTTGAAAAGTGGAATGAAATTGAAGCTGGATTACCTCAGTGA

mRNA sequence

ATGGCGCTTCTTTATCGCCTCCGCAATGCTTTCCCTTCGAATTGGAGTTACATCAACCATCGTCTTCACTACCGTTGTCTATCGACAATCCTTTCCCCTGATTCCACTAATCCTTTGTCAGCTAAACAGAAATCGAGGGCCGCATTGTCCCTACTGAAAGTTGAGGACAATCCTGAGCGTATAATCGATATTTGCCGAGCCGCTACTCTCACTCCAGAATCACATCTCGATCGCATCGCTTTCTCTGTTGCTATTTCTAAGCTTTCAGAGTCCAAGCACTTCGATGGAATTCGCCTGTTCCTCGAGGAGTTGAAGTCTCGTCCCGACTTGAAAAACGAGCGTTTTGCTTGCCACGCTATTATTCTCTATGGCCAGGCCAATATGCTCGATCATGCTATTCGCACTTTCAAGCAAATTGATGAACTGGGTATGCGTCATTCGGTTAAATCGCTTAATGCATTGCTATTTGCTTGTAATGTAGCTAAGGACTATAAGGAACTGAAGCGGGTTTTTATGGAGTTCCCTAAGATTTACGGAATCGAACCAGATCTCGATACTTATAACAGAGTAATCAAGGCGTTCTCGGAGTCGGGTTCCTCGAGTGCAGTGTTTTCAATTGTGGCGGAAATGGACAGGAAGGGTGTCAAACCAAATGCGACTACTTTTGCGAACTGGCTTGCTGGATGCTATAAGGAAGAGAAGTACGAGGATGTTGAGAAAGTCATAAATTTGATGGGAAAATATGGTGTGCGGCGTGGAGTTAGTACATATAATGCAAGAATACTGAGTCTTTGTAAATTGAAGAAATCATCAGAGGCGAAGGCTTTATTTGATGGGATGTTGTCGAGAGGTATGAAACCAAACTCTGTTACATACTGTAAGTTGATTCATGGATTCTGTAGGGAAGGAAATCTGGATGAAGCTAAGAATCTTTTTAAGAGAATGATCAACAGCGGTTGCCAACCTGACAGTGATTGCTATTTCACTTTGGTTTATTTCCTTTGTCGAGGAGGAGATTATGATGCCGCTTTCAAGATCTGTGGCGAAAGCATGGAGAAGGGGTGGGTTCCAAATATCACTACGATGAAGTCTCTTGTTGATGGATTAGTTAGCATCTCGAAGGTCGACGAGGCAAAGCAACTTATTGGGAAAATCAAGGAGAGGTTCTCAAAGAATGTTGAAAAGTGGAATGAAATTGAAGCTGGATTACCTCAGTGA

Coding sequence (CDS)

ATGGCGCTTCTTTATCGCCTCCGCAATGCTTTCCCTTCGAATTGGAGTTACATCAACCATCGTCTTCACTACCGTTGTCTATCGACAATCCTTTCCCCTGATTCCACTAATCCTTTGTCAGCTAAACAGAAATCGAGGGCCGCATTGTCCCTACTGAAAGTTGAGGACAATCCTGAGCGTATAATCGATATTTGCCGAGCCGCTACTCTCACTCCAGAATCACATCTCGATCGCATCGCTTTCTCTGTTGCTATTTCTAAGCTTTCAGAGTCCAAGCACTTCGATGGAATTCGCCTGTTCCTCGAGGAGTTGAAGTCTCGTCCCGACTTGAAAAACGAGCGTTTTGCTTGCCACGCTATTATTCTCTATGGCCAGGCCAATATGCTCGATCATGCTATTCGCACTTTCAAGCAAATTGATGAACTGGGTATGCGTCATTCGGTTAAATCGCTTAATGCATTGCTATTTGCTTGTAATGTAGCTAAGGACTATAAGGAACTGAAGCGGGTTTTTATGGAGTTCCCTAAGATTTACGGAATCGAACCAGATCTCGATACTTATAACAGAGTAATCAAGGCGTTCTCGGAGTCGGGTTCCTCGAGTGCAGTGTTTTCAATTGTGGCGGAAATGGACAGGAAGGGTGTCAAACCAAATGCGACTACTTTTGCGAACTGGCTTGCTGGATGCTATAAGGAAGAGAAGTACGAGGATGTTGAGAAAGTCATAAATTTGATGGGAAAATATGGTGTGCGGCGTGGAGTTAGTACATATAATGCAAGAATACTGAGTCTTTGTAAATTGAAGAAATCATCAGAGGCGAAGGCTTTATTTGATGGGATGTTGTCGAGAGGTATGAAACCAAACTCTGTTACATACTGTAAGTTGATTCATGGATTCTGTAGGGAAGGAAATCTGGATGAAGCTAAGAATCTTTTTAAGAGAATGATCAACAGCGGTTGCCAACCTGACAGTGATTGCTATTTCACTTTGGTTTATTTCCTTTGTCGAGGAGGAGATTATGATGCCGCTTTCAAGATCTGTGGCGAAAGCATGGAGAAGGGGTGGGTTCCAAATATCACTACGATGAAGTCTCTTGTTGATGGATTAGTTAGCATCTCGAAGGTCGACGAGGCAAAGCAACTTATTGGGAAAATCAAGGAGAGGTTCTCAAAGAATGTTGAAAAGTGGAATGAAATTGAAGCTGGATTACCTCAGTGA

Protein sequence

MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGIEPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRKGVKPNATTFANWLAGCYKEEKYEDVEKVINLMGKYGVRRGVSTYNARILSLCKLKKSSEAKALFDGMLSRGMKPNSVTYCKLIHGFCREGNLDEAKNLFKRMINSGCQPDSDCYFTLVYFLCRGGDYDAAFKICGESMEKGWVPNITTMKSLVDGLVSISKVDEAKQLIGKIKERFSKNVEKWNEIEAGLPQ

Homology

[Close]

BLAST of Carg07537 vs. NCBI nr
Match: XP_022933209.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucurbita moschata] >XP_022933210.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucurbita moschata])

HSP 1 Score: 421.4 bits (1082), Expect = 3.5e-114
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER
Sbjct: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           ILYGQANMLDHAIRTFKQIDELG+RHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI
Sbjct: 121 ILYGQANMLDHAIRTFKQIDELGVRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK
Sbjct: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 213

[Close]

BLAST of Carg07537 vs. NCBI nr
Match: XP_023001276.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita maxima] >XP_023001277.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 408.3 bits (1048), Expect = 3.1e-110
Identity = 206/213 (96.71%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLRN FPSN +YINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER
Sbjct: 1   MALLYRLRNVFPSNSTYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           ILYGQANMLDHAIRTFKQIDELG+RHSVKSLNALLFACNVAKDYKELKRVF+EFPKIYGI
Sbjct: 121 ILYGQANMLDHAIRTFKQIDELGVRHSVKSLNALLFACNVAKDYKELKRVFIEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPDLDTYNRVIKAFSE GSSSAV+SIVAEMDRK
Sbjct: 181 EPDLDTYNRVIKAFSELGSSSAVYSIVAEMDRK 213

[Close]

BLAST of Carg07537 vs. NCBI nr
Match: XP_023519002.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519003.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.8 bits (1044), Expect = 8.9e-110
Identity = 206/213 (96.71%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLRNAFPSN SYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVE+NPER
Sbjct: 1   MALLYRLRNAFPSNSSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEENPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           ILYGQANMLDHAIRTFKQIDELG+R SVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI
Sbjct: 121 ILYGQANMLDHAIRTFKQIDELGVRPSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPDLDTYNRVIKAFS+SGS+SAV+SIVAEMDRK
Sbjct: 181 EPDLDTYNRVIKAFSKSGSASAVYSIVAEMDRK 213

[Close]

BLAST of Carg07537 vs. NCBI nr
Match: XP_022954817.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita moschata] >XP_022954818.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 389.4 bits (999), Expect = 1.5e-104
Identity = 197/213 (92.49%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLR+AFPSN +YIN+RLHYR LSTILSPDSTNPLSAKQKSRAALSLLK EDNPER
Sbjct: 1   MALLYRLRHAFPSNATYINYRLHYRSLSTILSPDSTNPLSAKQKSRAALSLLKSEDNPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIR FLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           +LYGQA MLDHAI TFKQIDELG R SVKSLNALLFACN+AKDYKELKRVFMEFPK+YGI
Sbjct: 121 VLYGQAKMLDHAISTFKQIDELGARQSVKSLNALLFACNLAKDYKELKRVFMEFPKVYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPDLDTYNRVIKAFSESGSSSAV+SI+AEMDRK
Sbjct: 181 EPDLDTYNRVIKAFSESGSSSAVYSILAEMDRK 213

[Close]

BLAST of Carg07537 vs. NCBI nr
Match: XP_023542690.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 2.5e-104
Identity = 197/213 (92.49%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MA LYRLR+AFPSN +YIN+RLHYR LSTILSPDSTNPLSAKQKSRAALSLLK EDNPER
Sbjct: 1   MAFLYRLRHAFPSNATYINYRLHYRSLSTILSPDSTNPLSAKQKSRAALSLLKSEDNPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIR FLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           +LYGQANMLDHAI TFKQI ELG+ HSVKSLNALLFACN+AKDYKELKRVFMEFPKIYGI
Sbjct: 121 VLYGQANMLDHAISTFKQIGELGVCHSVKSLNALLFACNLAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPDLDTYNRVIKAFSESGSSSAV+SI+AEMDRK
Sbjct: 181 EPDLDTYNRVIKAFSESGSSSAVYSILAEMDRK 213

[Close]

BLAST of Carg07537 vs. TAIR10
Match: AT1G61870.1 (pentatricopeptide repeat 336)

HSP 1 Score: 248.4 bits (633), Expect = 7.3e-66
Identity = 127/215 (59.07%), Postives = 170/215 (79.07%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCL---STILSPDSTNPLSAKQKSRAALSLLKVEDN 60
           MALL R+R++  S + ++N     R L   STILSPDS  PL++K+KS+AALSLLK E +
Sbjct: 1   MALLSRIRSS-TSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKD 60

Query: 61  PERIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEE-LKSRPDLKNERFA 120
           P+RI++ICRAA+LTP+  +DRIAFS A+  L+E KHF  +   L+  +++RPDLK+ERFA
Sbjct: 61  PDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFA 120

Query: 121 CHAIILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPK 180
            HAI+LY QANMLDH++R F+ +++  +  +VKSLNALLFAC VAKDYKE KRV++E PK
Sbjct: 121 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 180

Query: 181 IYGIEPDLDTYNRVIKAFSESGSSSAVFSIVAEMD 212
           +YGIEPDL+TYNR+IK F ESGS+S+ +SIVAEM+
Sbjct: 181 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEME 214

[Close]

BLAST of Carg07537 vs. TAIR10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-53
Identity = 109/215 (50.70%), Postives = 157/215 (73.02%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQ-KSRAALSLLKVEDNPE 60
           MA L+R+R    ++   +     +R  S+  S  +   L++KQ KSR  LSLLK E+NP+
Sbjct: 1   MAFLFRIR----TSEFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPD 60

Query: 61  RIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEE-LKSRPDLKNERFACH 120
           RI++ICR+ +L+P+ H+DRI FSVA+  L+  KHF  +   L+  ++++PD K+E FA  
Sbjct: 61  RILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVR 120

Query: 121 AIILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIY 180
           AIILYG+ANMLD +I+TF+ +++  +  +VKSLNALLFAC +AKDYKE  RV++E PK+Y
Sbjct: 121 AIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMY 180

Query: 181 GIEPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           GIEPDL+TYNR+I+   ESGS+S+ +SIVAEM+RK
Sbjct: 181 GIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERK 211

[Close]

BLAST of Carg07537 vs. TAIR10
Match: AT2G18520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-21
Identity = 65/200 (32.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 21  RLHYRCL-----STILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESH 80
           RL+ R L     +T +   +T    A   S+A   L KV+D P++ + I ++ +    S 
Sbjct: 5   RLYLRFLRRFSTATGIDSQTTAYPGAITMSKAKSKLRKVQD-PDKALAIYKSVSNNSTSP 64

Query: 81  L-DRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIR 140
           L  R A  + + +L++S+ F  I   +E  K+ P +K E F    I  YG+A+M DHA++
Sbjct: 65  LSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMK 124

Query: 141 TFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIY-GIEPDLDTYNRVIKA 200
            F+++D+LG   +V S NALL AC  +  ++ + ++F EFP+ Y  I PD  +Y  +IK+
Sbjct: 125 MFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKS 184

Query: 201 FSESGSSSAVFSIVAEMDRK 214
           + +SG       I+ +M+ K
Sbjct: 185 YCDSGKPEKAMEIMRDMEVK 203

[Close]

BLAST of Carg07537 vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-19
Identity = 63/200 (31.50%), Postives = 102/200 (51.00%), Query Frame = 0


Query: 16  SYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDI-CRAATLTPES 75
           S I+ RL  R  S      +T P S K     A S L+ E +P++ + I    +  +   
Sbjct: 4   SRISLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASP 63

Query: 76  HLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIR 135
              R A  + + +L++ + F  I   +E  K+ P +K E F    I  YGQA+M +HA+R
Sbjct: 64  VSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMR 123

Query: 136 TFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYG-IEPDLDTYNRVIKA 195
           TF+Q+D+ G   S  S NALL AC  +K++ ++ ++F      Y  I PD  +Y  +IK+
Sbjct: 124 TFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRYNKIIPDKISYGILIKS 183

Query: 196 FSESGSSSAVFSIVAEMDRK 214
           + +SG+      I+ +M  K
Sbjct: 184 YCDSGTPEKAIEIMRQMQGK 203

[Close]

BLAST of Carg07537 vs. TAIR10
Match: AT1G55890.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18
Identity = 52/186 (27.96%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 28  STILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESHLDRIAFSVAISK 87
           +T++S  +    +     ++  SL+  E NP+RI++  + A  +     +   +   + +
Sbjct: 24  ATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYDRTVRR 83

Query: 88  LSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIRTFKQIDELGMRHS 147
           L  +K    +   LEE K   D+  E FA   I LYG+A M ++A + F+++     + S
Sbjct: 84  LVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRS 143

Query: 148 VKSLNALLFACNVAKDYKELKRVFMEFPKIYGIEPDLDTYNRVIKAFSESGSSSAVFSIV 207
           V S NALL A  ++K +  ++ +F E P    I+PD+ +YN +IKA  E  S     +++
Sbjct: 144 VLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALL 203

Query: 208 AEMDRK 214
            E++ K
Sbjct: 204 DEIENK 209

[Close]

BLAST of Carg07537 vs. Swiss-Prot
Match: sp|Q8LE47|PPR87_ARATH (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-64
Identity = 127/215 (59.07%), Postives = 170/215 (79.07%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCL---STILSPDSTNPLSAKQKSRAALSLLKVEDN 60
           MALL R+R++  S + ++N     R L   STILSPDS  PL++K+KS+AALSLLK E +
Sbjct: 1   MALLSRIRSS-TSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKD 60

Query: 61  PERIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEE-LKSRPDLKNERFA 120
           P+RI++ICRAA+LTP+  +DRIAFS A+  L+E KHF  +   L+  +++RPDLK+ERFA
Sbjct: 61  PDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFA 120

Query: 121 CHAIILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPK 180
            HAI+LY QANMLDH++R F+ +++  +  +VKSLNALLFAC VAKDYKE KRV++E PK
Sbjct: 121 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 180

Query: 181 IYGIEPDLDTYNRVIKAFSESGSSSAVFSIVAEMD 212
           +YGIEPDL+TYNR+IK F ESGS+S+ +SIVAEM+
Sbjct: 181 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEME 214

[Close]

BLAST of Carg07537 vs. Swiss-Prot
Match: sp|Q9SAB4|PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-52
Identity = 109/215 (50.70%), Postives = 157/215 (73.02%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQ-KSRAALSLLKVEDNPE 60
           MA L+R+R    ++   +     +R  S+  S  +   L++KQ KSR  LSLLK E+NP+
Sbjct: 1   MAFLFRIR----TSEFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPD 60

Query: 61  RIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEE-LKSRPDLKNERFACH 120
           RI++ICR+ +L+P+ H+DRI FSVA+  L+  KHF  +   L+  ++++PD K+E FA  
Sbjct: 61  RILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVR 120

Query: 121 AIILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIY 180
           AIILYG+ANMLD +I+TF+ +++  +  +VKSLNALLFAC +AKDYKE  RV++E PK+Y
Sbjct: 121 AIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMY 180

Query: 181 GIEPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           GIEPDL+TYNR+I+   ESGS+S+ +SIVAEM+RK
Sbjct: 181 GIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERK 211

[Close]

BLAST of Carg07537 vs. Swiss-Prot
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-20
Identity = 65/200 (32.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 21  RLHYRCL-----STILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESH 80
           RL+ R L     +T +   +T    A   S+A   L KV+D P++ + I ++ +    S 
Sbjct: 5   RLYLRFLRRFSTATGIDSQTTAYPGAITMSKAKSKLRKVQD-PDKALAIYKSVSNNSTSP 64

Query: 81  L-DRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIR 140
           L  R A  + + +L++S+ F  I   +E  K+ P +K E F    I  YG+A+M DHA++
Sbjct: 65  LSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMK 124

Query: 141 TFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIY-GIEPDLDTYNRVIKA 200
            F+++D+LG   +V S NALL AC  +  ++ + ++F EFP+ Y  I PD  +Y  +IK+
Sbjct: 125 MFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKS 184

Query: 201 FSESGSSSAVFSIVAEMDRK 214
           + +SG       I+ +M+ K
Sbjct: 185 YCDSGKPEKAMEIMRDMEVK 203

[Close]

BLAST of Carg07537 vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-18
Identity = 63/200 (31.50%), Postives = 102/200 (51.00%), Query Frame = 0


Query: 16  SYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDI-CRAATLTPES 75
           S I+ RL  R  S      +T P S K     A S L+ E +P++ + I    +  +   
Sbjct: 4   SRISLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASP 63

Query: 76  HLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIR 135
              R A  + + +L++ + F  I   +E  K+ P +K E F    I  YGQA+M +HA+R
Sbjct: 64  VSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMR 123

Query: 136 TFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYG-IEPDLDTYNRVIKA 195
           TF+Q+D+ G   S  S NALL AC  +K++ ++ ++F      Y  I PD  +Y  +IK+
Sbjct: 124 TFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXXXRYNKIIPDKISYGILIKS 183

Query: 196 FSESGSSSAVFSIVAEMDRK 214
           + +SG+      I+ +M  K
Sbjct: 184 YCDSGTPEKAIEIMRQMQGK 203

[Close]

BLAST of Carg07537 vs. Swiss-Prot
Match: sp|Q9LG23|PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-17
Identity = 52/186 (27.96%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 28  STILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESHLDRIAFSVAISK 87
           +T++S  +    +     ++  SL+  E NP+RI++  + A  +     +   +   + +
Sbjct: 24  ATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYDRTVRR 83

Query: 88  LSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIRTFKQIDELGMRHS 147
           L  +K    +   LEE K   D+  E FA   I LYG+A M ++A + F+++     + S
Sbjct: 84  LVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRS 143

Query: 148 VKSLNALLFACNVAKDYKELKRVFMEFPKIYGIEPDLDTYNRVIKAFSESGSSSAVFSIV 207
           V S NALL A  ++K +  ++ +F E P    I+PD+ +YN +IKA  E  S     +++
Sbjct: 144 VLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALL 203

Query: 208 AEMDRK 214
            E++ K
Sbjct: 204 DEIENK 209

[Close]

BLAST of Carg07537 vs. TrEMBL
Match: tr|A0A0A0LRL9|A0A0A0LRL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063590 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.0e-103
Identity = 192/213 (90.14%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLR+AFPSN +YIN+RLHYR LSTILSPDS+NPLSAKQKSRAALSLLK E+NPER
Sbjct: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAA+LTPE HLDRIAFSVAISKLS+ KHFDGIR FLEELKSRPDLKNERFACHAI
Sbjct: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
           +LYGQANMLDHAIRTFKQIDELG+RHSVK+LNALLFACN+AKDYKELKRV+MEFPKIYGI
Sbjct: 121 VLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPD+DTYNRVIKAFSESGSSS+V SIVAEMDRK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRK 213

[Close]

BLAST of Carg07537 vs. TrEMBL
Match: tr|A0A1S3B2W7|A0A1S3B2W7_CUCME (pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485402 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 188/213 (88.26%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           MALLYRLR+AF SN +YIN+ LHYR LSTILSPDS+ PLSAKQKSRAALSLLK E+NPER
Sbjct: 1   MALLYRLRSAFSSNSTYINYHLHYRSLSTILSPDSSTPLSAKQKSRAALSLLKTEENPER 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAI 120
           IIDICRAA LTPE HLDRIAFSVAISKLS+SKH+DGI  FLEELKSRPDLKNERFACH I
Sbjct: 61  IIDICRAAALTPEFHLDRIAFSVAISKLSKSKHYDGIHRFLEELKSRPDLKNERFACHVI 120

Query: 121 ILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGI 180
            LYGQANMLDHAIRTFKQIDELG+RHSVK LN+LLFACNVAKDYKELKRVFMEFPKIYGI
Sbjct: 121 ALYGQANMLDHAIRTFKQIDELGVRHSVKLLNSLLFACNVAKDYKELKRVFMEFPKIYGI 180

Query: 181 EPDLDTYNRVIKAFSESGSSSAVFSIVAEMDRK 214
           EPD+DTYNRVIKAFSESGSSS+V SIVAEMDRK
Sbjct: 181 EPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRK 213

[Close]

BLAST of Carg07537 vs. TrEMBL
Match: tr|A0A1U8AK64|A0A1U8AK64_NELNU (pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104604838 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.0e-74
Identity = 144/196 (73.47%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 18  INHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPERIIDICRAATLTPESHLD 77
           IN  LH R  S+ILSPDST PL++KQKSRAA++LLK E NPERIIDICRAA+LTPE HLD
Sbjct: 9   INSLLHRRHFSSILSPDSTTPLTSKQKSRAAIALLKSEKNPERIIDICRAASLTPELHLD 68

Query: 78  RIAFSVAISKLSESKHFDGIRLFLEELKSRPDLKNERFACHAIILYGQANMLDHAIRTFK 137
           RIAFS+AISKL+ES  F+GIR FLEELK+R DLKNERF  HAI+LYGQA MLDHAIRTFK
Sbjct: 69  RIAFSIAISKLTESNSFEGIRSFLEELKTRSDLKNERFLSHAIVLYGQAGMLDHAIRTFK 128

Query: 138 QIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYGIEPDLDTYNRVIKAFSES 197
           Q+DE+G+  S KSLNALLFAC VAK + E+ R+F+EFP+ YGI PD+DTYN VIK+F ES
Sbjct: 129 QMDEMGIPRSTKSLNALLFACIVAKKHDEVSRIFLEFPRAYGITPDIDTYNTVIKSFCES 188

Query: 198 GSSSAVFSIVAEMDRK 214
           GSSS+V+SI+AEM RK
Sbjct: 189 GSSSSVYSILAEMSRK 204

[Close]

BLAST of Carg07537 vs. TrEMBL
Match: tr|A0A2I4GQB4|A0A2I4GQB4_9ROSI (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC109009896 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.4e-71
Identity = 142/213 (66.67%), Postives = 178/213 (83.57%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           M+LLYR+R A  S  S I  R H+   S++LSP+ST PL++K+K+RAALSLLK E NP +
Sbjct: 1   MSLLYRIRQALTS--SPIAQRYHF-STSSVLSPNSTTPLTSKEKTRAALSLLKSEQNPHK 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFL-EELKSRPDLKNERFACHA 120
           I++ICRAA+LTP+SHLDRIAFSVA+SKLS + HFD IR FL EELKSRPDLK ERFA HA
Sbjct: 61  ILEICRAASLTPDSHLDRIAFSVAVSKLSSANHFDVIRQFLEEELKSRPDLKTERFASHA 120

Query: 121 IILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYG 180
           I+LYGQA ML  A+ TF+Q+D LG+  SVKSLNALLFAC ++KDYKELKR+++EFPKIY 
Sbjct: 121 IVLYGQAKMLHQAVETFQQMDRLGIDRSVKSLNALLFACLLSKDYKELKRIYLEFPKIYS 180

Query: 181 IEPDLDTYNRVIKAFSESGSSSAVFSIVAEMDR 213
           I+PDLDTYN VIKAF++S S+S+ +S++AEM+R
Sbjct: 181 IQPDLDTYNTVIKAFADSDSTSSGYSVLAEMER 210

[Close]

BLAST of Carg07537 vs. TrEMBL
Match: tr|A0A2I4HGG1|A0A2I4HGG1_9ROSI (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC109017412 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.4e-71
Identity = 142/213 (66.67%), Postives = 178/213 (83.57%), Query Frame = 0


Query: 1   MALLYRLRNAFPSNWSYINHRLHYRCLSTILSPDSTNPLSAKQKSRAALSLLKVEDNPER 60
           M+LLYR+R A  S  S I  R H+   S++LSP+ST PL++K+K+RAALSLLK E NP +
Sbjct: 1   MSLLYRIRQALTS--SPIAQRYHF-STSSVLSPNSTTPLTSKEKTRAALSLLKSEQNPHK 60

Query: 61  IIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRLFL-EELKSRPDLKNERFACHA 120
           I++ICRAA+LTP+SHLDRIAFSVA+SKLS + HFD IR FL EELKSRPDLK ERFA HA
Sbjct: 61  ILEICRAASLTPDSHLDRIAFSVAVSKLSSANHFDVIRQFLEEELKSRPDLKTERFASHA 120

Query: 121 IILYGQANMLDHAIRTFKQIDELGMRHSVKSLNALLFACNVAKDYKELKRVFMEFPKIYG 180
           I+LYGQA ML  A+ TF+Q+D LG+  SVKSLNALLFAC ++KDYKELKR+++EFPKIY 
Sbjct: 121 IVLYGQAKMLHQAVETFQQMDRLGIDRSVKSLNALLFACLLSKDYKELKRIYLEFPKIYS 180

Query: 181 IEPDLDTYNRVIKAFSESGSSSAVFSIVAEMDR 213
           I+PDLDTYN VIKAF++S S+S+ +S++AEM+R
Sbjct: 181 IQPDLDTYNTVIKAFADSDSTSSGYSVLAEMER 210

The following BLAST results are available for this feature:

BLAST of Carg07537 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933209.1	3.5e-114	99.53	pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucurbita ...	[more]
XP_023001276.1	3.1e-110	96.71	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur...	[more]
XP_023519002.1	8.9e-110	96.71	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur...	[more]
XP_022954817.1	1.5e-104	92.49	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur...	[more]
XP_023542690.1	2.5e-104	92.49	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucur...	[more]

BLAST of Carg07537 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61870.1	7.3e-66	59.07	pentatricopeptide repeat 336	[more]
AT1G11630.1	1.9e-53	50.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G18520.1	1.4e-21	32.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G36680.1	1.0e-19	31.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G55890.1	1.1e-18	27.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg07537 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LE47\|PPR87_ARATH	1.3e-64	59.07	Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop...	[more]
sp\|Q9SAB4\|PPR33_ARATH	3.4e-52	50.70	Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidop...	[more]
sp\|Q9ZU67\|PP162_ARATH	2.6e-20	32.50	Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidop...	[more]
sp\|Q9M065\|PP352_ARATH	1.9e-18	31.50	Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop...	[more]
sp\|Q9LG23\|PPR82_ARATH	2.1e-17	27.96	Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop...	[more]

BLAST of Carg07537 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRL9\|A0A0A0LRL9_CUCSA	7.0e-103	90.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063590 PE=4 SV=1	[more]
tr\|A0A1S3B2W7\|A0A1S3B2W7_CUCME	2.1e-99	88.26	pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Cucumis ...	[more]
tr\|A0A1U8AK64\|A0A1U8AK64_NELNU	3.0e-74	73.47	pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Nelumbo ...	[more]
tr\|A0A2I4GQB4\|A0A2I4GQB4_9ROSI	5.4e-71	66.67	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Jug...	[more]
tr\|A0A2I4HGG1\|A0A2I4HGG1_9ROSI	5.4e-71	66.67	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Jug...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07537-RA	Carg07537-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 253..301 e-value: 1.6E-13 score: 50.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 186..219 e-value: 4.2E-5 score: 21.4 coord: 329..359 e-value: 1.6E-4 score: 19.6 coord: 290..324 e-value: 1.0E-11 score: 42.2 coord: 256..289 e-value: 3.7E-7 score: 27.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 361..388 e-value: 1.0 score: 9.7 coord: 221..250 e-value: 1.2 score: 9.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 136..194 e-value: 2.9E-8 score: 33.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 218..252 score: 7.662
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 323..357 score: 9.328
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 77..107 score: 5.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 253..287 score: 10.863
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..182 score: 6.193
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 112..146 score: 5.557
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..388 score: 7.267
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..322 score: 14.447
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 183..217 score: 10.83
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 76..246 e-value: 3.3E-25 score: 91.1 coord: 247..402 e-value: 7.2E-36 score: 126.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 75..397
None	No IPR available	PANTHER	PTHR24015:SF579	SUBFAMILY NOT NAMED	coord: 2..397
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..397

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07537	Cla019393	Watermelon (97103) v1	carwmB1004
Carg07537	Csa1G063590	Cucumber (Chinese Long) v2	carcuB1020
Carg07537	ClCG03G004860	Watermelon (Charleston Gray)	carwcgB0981
Carg07537	CSPI01G10830	Wild cucumber (PI 183967)	carcpiB1044
Carg07537	Cucsa.085960	Cucumber (Gy14) v1	carcgyB1119
Carg07537	CmaCh18G002480	Cucurbita maxima (Rimu)	carcmaB1394
Carg07537	CmoCh18G002800	Cucurbita moschata (Rifu)	carcmoB1352
Carg07537	Lsi02G006120	Bottle gourd (USVL1VR-Ls)	carlsiB920
Carg07537	Cp4.1LG20g03740	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07537	Cp4.1LG09g09080	Cucurbita pepo (Zucchini)	carcpeB1395
Carg07537	CsGy1G010710	Cucumber (Gy14) v2	carcgybB0992
Carg07537	CsaV3_1G010890	Cucumber (Chinese Long) v3	carcucB1049
Carg07537	Cla97C03G056010	Watermelon (97103) v2	carwmbB1061
Carg07537	Bhi08G001523	Wax gourd	carwgoB1182

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07537	Carg06855	Silver-seed gourd	carcarB483

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07537	Melon (DHL92) v3.6.1	carmedB0987
Carg07537	Melon (DHL92) v3.6.1	carmedB0990
Carg07537	Watermelon (Charleston Gray)	carwcgB0979
Carg07537	Watermelon (97103) v1	carwmB1007
Carg07537	Watermelon (97103) v2	carwmbB1059
Carg07537	Wax gourd	carwgoB1175
Carg07537	Wax gourd	carwgoB1179
Carg07537	Silver-seed gourd	carcarB565
Carg07537	Silver-seed gourd	carcarB645
Carg07537	Cucumber (Gy14) v2	carcgybB0993
Carg07537	Cucumber (Gy14) v1	carcgyB1118
Carg07537	Cucurbita maxima (Rimu)	carcmaB1398
Carg07537	Cucurbita maxima (Rimu)	carcmaB1393
Carg07537	Cucurbita maxima (Rimu)	carcmaB1399
Carg07537	Cucurbita moschata (Rifu)	carcmoB1349
Carg07537	Cucurbita moschata (Rifu)	carcmoB1353
Carg07537	Cucurbita moschata (Rifu)	carcmoB1355
Carg07537	Cucurbita pepo (Zucchini)	carcpeB1397
Carg07537	Cucurbita pepo (Zucchini)	carcpeB1400
Carg07537	Wild cucumber (PI 183967)	carcpiB1045
Carg07537	Cucumber (Chinese Long) v2	carcuB1021
Carg07537	Cucumber (Chinese Long) v3	carcucB1051
Carg07537	Bottle gourd (USVL1VR-Ls)	carlsiB917
Carg07537	Melon (DHL92) v3.5.1	carmeB0977
Carg07537	Melon (DHL92) v3.5.1	carmeB0980