CsaV3_1G006930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRibosomal protein S24/S35
Locationchr1 : 4393715 .. 4395418 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGAAACGTTTCTTCGATCATAAACCCTCAGAAAATGGGTCTAAACCCTAAAACTGTAAAGAAACGCCATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGGTAAATTAGTATTCAATTTGAAAATCATTTCTCAAATTTGGGCACTGTGGACTATACTCTCCAGGAATTTCTAAGCATGAGTCATCGCCTTCTATCATATTTTATTGGTATAGCTCATAATTGTGGGATTTCAAGTTCAGAGATCTTTTTTTTTACTTTCAAATTGTGTCTTCATTTCATGAGATGGTTCTTCGTAATTTTACAGTTGGTCGGATAATTGCCATGTTTTTTTTTGCCTTACTTAAGATTATTGTACATTTTTTTGTCATTCTGTTGAAAACTGATATGAAGAGGTATATTTTTTCCAGTTTAATTGTTTGAGTTCTTGAGTTGATGTTAGTTTAGCACCATAGTTGACTATAAAATCTTGGATTTATATCCTCTTCTCACGTGTAGGTTGTTTAATTCTGGAAATTTTAGAATAGATGTGTTAAGAAGCGTTTGTTGAAGAAAGTACTTTTAATCAAGAGACTTCCGTTATAAGTAACCGGAAAAGTAGTGAAATGAAAGTTGATTTTGTTTGTTGGTTGTTGGTTCTGTATATTGGAAGTTCTTTTAATTAAATTAGAGATAGGTTTTGAATGAATATTTTGAGAAAGATGTGAGAATAATTAGAATTACAAAGCAATTAAGTGAGGAAAATAGAGATCAATGAGAGAAAGCAAAAGAGCTCAGAAAAATAGAAGGGAAATCTGGAAAAGAAAGTGAGTAGAAAGAGTTTAGTGCAAAGAGATATTAAGAAAAAGGTGTTCACAGAGAAATGTTAATGAAAGAGTTTGTATTTTGAGAAATGAAGGATAATGTATTTTAGTCAAAGATACTTGATAGAACATCTATGATCTACCATTCACTTGTTCAAAAAATACGACTGATCTTAGTGAAATTAACCATTTAAATAGTACTTCTGTTAAAAGATGTGTAAAGTTCTTGTTATTTCTGGATCAATTTTTGGTAGTATGATTAATTTTTGTTTTTGAGCTTCTTCATTTGGTGTTCCTTTTCTGGAATCTTAGACTTATGATTTAGAAGCTAATACAGAAATGATTTATCTGTGAATTCAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAAGATAATGCGAAGCTTATAGTTTATGATGATGTTAGATTATTTTACGTTTTAAGTGAATTCTATCCCCCAACTTTTACTTACTTCAATTCAATTGGATGGAGTGGGC

mRNA sequence

ATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAA

Coding sequence (CDS)

ATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAA

Protein sequence

MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSDLMDDDSSDASDDSEEEDRRI
Homology
[Close]
BLAST of CsaV3_1G006930 vs. NCBI nr
Match: XP_004137486.1 (PREDICTED: histone chaperone RTT106 [Cucumis sativus] >KGN64149.1 hypothetical protein Csa_1G042590 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 5.0e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120

Query: 121 GEVEDFKGEEEYDSDLM 138
           GEVEDFKGEEEYDSDLM
Sbjct: 121 GEVEDFKGEEEYDSDLM 137

[Close]
BLAST of CsaV3_1G006930 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 8.6e-45
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTL---RRYSSGNDKYNELNST- 60
           MKRA+WGAVF V S  +S+SP L+T RS PLL PFSVS     R YS+GNDKYN LNST 
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
           RQ++PGEVEDFK +EEYDSDL
Sbjct: 121 RQRMPGEVEDFK-DEEYDSDL 139

[Close]
BLAST of CsaV3_1G006930 vs. NCBI nr
Match: XP_008461340.1 (PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 103/136 (75.74%), Postives = 107/136 (78.68%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVF+V S TLSVSPPLRTFRS PLLSPFSV TLR YSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLP IFEAIL                      +P
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILXXXXXXXXXXXXXXXXXXXXXXMP 120

Query: 121 GEVEDFKGEEEYDSDL 137
           GE+EDFKG EEYDS+L
Sbjct: 121 GEIEDFKG-EEYDSEL 135

[Close]
BLAST of CsaV3_1G006930 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 1.6e-43
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSV---STLRRYSSGNDKYNELNST- 60
           MKRA+WGAVF   S  +S+SP L+T RS PLL  FSV   S  R YSSGNDKYN LNST 
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
           RQ++PGEVEDFK +EEYDSDL
Sbjct: 121 RQRVPGEVEDFK-DEEYDSDL 139

[Close]
BLAST of CsaV3_1G006930 vs. NCBI nr
Match: XP_023000953.1 (uncharacterized protein LOC111495236 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-42
Identity = 104/141 (73.76%), Postives = 114/141 (80.85%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSV---STLRRYSSGNDKYNELNST- 60
           MKRA+WGAVF   S  +S+ P L+T RS PLL PFSV   S  R YSSGNDKYN LNST 
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDD VS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
            Q++PGEVEDFK +EEYDSDL
Sbjct: 121 LQRMPGEVEDFK-DEEYDSDL 139

[Close]
BLAST of CsaV3_1G006930 vs. TAIR10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 0 

Query: 30  PLLSPFSVSTLRRYSSGNDKYNELNST---------KNKDSLVDDDVSTEELKRKIDKFY 89
           P L+P +     ++   + +  E ++T          +K  LV +DVS +ELK +IDK +
Sbjct: 27  PFLTPIAAPAPPKFRFFSSESGENSTTATESSPTDSSDKKDLVVEDVSNKELKSRIDKSF 86

Query: 90  EGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSD 136
             G+ D+LP + EA+L+R+L  KH + DDELM++I + LP   +D   +E+++SD
Sbjct: 87  NEGNEDALPGVIEALLQRRLVDKHAETDDELMEKI-ESLP--FKDDVKDEDFESD 138

[Close]
BLAST of CsaV3_1G006930 vs. TAIR10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-10
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 0 

Query: 30  PLLSPFSVSTLRRYSSGNDKYNELNST---------KNKDSLVDDDVSTEELKRKIDKFY 89
           P L+P +     ++   + +  E ++T           K  LV +DVS +ELK +I+K++
Sbjct: 31  PFLAPIAAPAAPKFRFFSSESGENSTTAPESSPTDSPEKKDLVVEDVSNKELKSRIEKYF 90

Query: 90  EGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSD 136
             G+ D+LP + EA+L+R+L  KH + DDEL+++I + LP   +D   +E+++SD
Sbjct: 91  NEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI-ESLP--FKDDVKDEDFESD 142

[Close]
BLAST of CsaV3_1G006930 vs. TAIR10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 55  STKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKE 114
           S  ++    ++ +S EELK++I  F + G+ D++P +FEA++ RKLSGKH+D+DDE+M  
Sbjct: 52  SDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDV 111

Query: 115 IRQQLPGEVEDFKGEEEYDSDL 137
           +R+     V D    ++ DSD+
Sbjct: 112 VRKY---PVNDAHKVDDIDSDI 130

[Close]
BLAST of CsaV3_1G006930 vs. TrEMBL
Match: tr|A0A0A0LT17|A0A0A0LT17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.3e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120

Query: 121 GEVEDFKGEEEYDSDLM 138
           GEVEDFKGEEEYDSDLM
Sbjct: 121 GEVEDFKGEEEYDSDLM 137

[Close]
BLAST of CsaV3_1G006930 vs. TrEMBL
Match: tr|A0A1S3CEX3|A0A1S3CEX3_CUCME (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-44
Identity = 103/136 (75.74%), Postives = 107/136 (78.68%), Query Frame = 0 

Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVF+V S TLSVSPPLRTFRS PLLSPFSV TLR YSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLP IFEAIL                      +P
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILXXXXXXXXXXXXXXXXXXXXXXMP 120

Query: 121 GEVEDFKGEEEYDSDL 137
           GE+EDFKG EEYDS+L
Sbjct: 121 GEIEDFKG-EEYDSEL 135

[Close]
BLAST of CsaV3_1G006930 vs. TrEMBL
Match: tr|A0A2U1PKV3|A0A2U1PKV3_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA141040 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 57  KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIR 116
           KN+++ V DDVS+ ELK +IDKFY+ GD +++P IFE+ILKRKLSGKHED+DDELM E R
Sbjct: 51  KNENAGVTDDVSSAELKAQIDKFYKEGDIEAIPNIFESILKRKLSGKHEDSDDELMNEFR 110

Query: 117 QQLPGEV--EDFKGEEEYDSD 136
              P EV  EDF  E E DSD
Sbjct: 111 VDQP-EVNDEDFDSESESDSD 130

[Close]
BLAST of CsaV3_1G006930 vs. TrEMBL
Match: tr|A0A2I4GT88|A0A2I4GT88_9ROSI (uncharacterized protein LOC109010669 OS=Juglans regia OX=51240 GN=LOC109010669 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 53/118 (44.92%), Postives = 81/118 (68.64%), Query Frame = 0 

Query: 30  PLLSPFSVST----LRRYSSGNDKYNE---------LNSTKNKD-SLVDDDVSTEELKRK 89
           PLL+P + ST    LR YSS ND   E         L +++NKD S+  +DVS ++LK +
Sbjct: 31  PLLAPLAPSTTRPRLRFYSSENDSSGENPTPAPETSLATSQNKDSSIAVEDVSNKDLKTR 90

Query: 90  IDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYD 134
           I+K+++ GD ++LP+I EAIL+RKL+GKHED DDELM+E+R +   +V+D + E +++
Sbjct: 91  IEKYFK-GDEEALPSILEAILQRKLAGKHEDTDDELMEELRMKPLDDVKDKEFESDFE 147

[Close]
BLAST of CsaV3_1G006930 vs. TrEMBL
Match: tr|A0A2P4H4U7|A0A2P4H4U7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65292 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 0 

Query: 36  SVSTLRRYSSGNDKYNELNSTKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAI 95
           ++S LR YSS  +  N  ++ K   S+ ++D+S  ELK+ IDKFY  GDA+++P+IFEAI
Sbjct: 24  TLSRLRLYSSNGNGSNLTHTQKPNSSVDEEDISNPELKKLIDKFY-AGDAEAIPSIFEAI 83

Query: 96  LKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGE----EEYDSDL 137
           LKRKL+GK+E+AD ELM+EI  +     +D   E    EE++SDL
Sbjct: 84  LKRKLAGKYEEADKELMEEIVGKTHESSDDIDDEELSDEEFESDL 127

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137486.15.0e-69100.00PREDICTED: histone chaperone RTT106 [Cucumis sativus] >KGN64149.1 hypothetical p... [more]
XP_023519890.18.6e-4575.89uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo][more]
XP_008461340.13.3e-4475.74PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo][more]
XP_022924024.11.6e-4375.18uncharacterized protein LOC111431572 [Cucurbita moschata][more]
XP_023000953.14.0e-4273.76uncharacterized protein LOC111495236 [Cucurbita maxima][more]
BLAST of CsaV3_1G006930 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21460.12.9e-1034.78Ribosomal protein S24/S35, mitochondrial[more]
AT3G18240.14.9e-1033.04Ribosomal protein S24/S35, mitochondrial[more]
AT1G73770.18.4e-1039.02FUNCTIONS IN: molecular_function unknown[more]
BLAST of CsaV3_1G006930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT17|A0A0A0LT17_CUCSA3.3e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1[more]
tr|A0A1S3CEX3|A0A1S3CEX3_CUCME2.2e-4475.74uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=... [more]
tr|A0A2U1PKV3|A0A2U1PKV3_ARTAN3.6e-1562.96Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA141040 PE=4 SV=1[more]
tr|A0A2I4GT88|A0A2I4GT88_9ROSI3.4e-1344.92uncharacterized protein LOC109010669 OS=Juglans regia OX=51240 GN=LOC109010669 P... [more]
tr|A0A2P4H4U7|A0A2P4H4U7_QUESU5.7e-1347.62Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65292 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006930.1CsaV3_1G006930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..125

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006930CSPI01G06990Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006930CSPI01G04010Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006930Cucsa.111230Cucumber (Gy14) v1cgycucB145
CsaV3_1G006930Cucsa.121720Cucumber (Gy14) v1cgycucB163
CsaV3_1G006930CmaCh11G002900Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006930CmaCh13G010080Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006930CmoCh10G003320Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G006930CmoCh11G002950Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006930CmoCh13G010460Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006930Cp4.1LG18g07070Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G006930Cp4.1LG20g01330Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006930CsGy1G003930Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006930Carg04829Silver-seed gourdcarcucB0418
CsaV3_1G006930Cla018477Watermelon (97103) v1cucwmB070
CsaV3_1G006930Cla018955Watermelon (97103) v1cucwmB107
CsaV3_1G006930MELO3C002109Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006930MELO3C017325Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006930ClCG04G010900Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006930ClCG06G014600Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006930Lsi02G002110Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006930Lsi06G013140Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006930MELO3C017325.2Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006930MELO3C002109.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006930Cla97C04G077710Watermelon (97103) v2cucwmbB054
CsaV3_1G006930Cla97C06G124120Watermelon (97103) v2cucwmbB078
CsaV3_1G006930Bhi08G001051Wax gourdcucwgoB031
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G006930CsaV3_1G004020Cucumber (Chinese Long) v3cuccucB000
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006930Silver-seed gourdcarcucB0548
CsaV3_1G006930Silver-seed gourdcarcucB0630
CsaV3_1G006930Silver-seed gourdcarcucB0825
CsaV3_1G006930Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006930Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G006930Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006930Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006930Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006930Cucurbita pepo (Zucchini)cpecucB0816