CmoCh13G010460 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G010460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosomal protein S24/S35, mitochondrial
Location	Cmo_Chr13 : 8764856 .. 8766317 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGATAAACCCTAGAACTGCGAAGAAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCACTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGGTAAAATATAGTTGAATGTTGTTTGTCAAAGTTCTCTGTGTTTTCTTTCTAGGAAAAGATTTTTCAAATAGATTTAATTATATTCTCGTATTTCTAAGCATGAATCATCTTCTATCGTATTATCTTTATATTTGCTTTCTGCGGTTTAATGGTTTGAGTTCTTGAGTAAGTATTAGTATAACGCAATGGTTACCTATGAAATTTTGAATGATATCCTCCTCTTATGTGTAAGTTGTTTAATACTGGAAATTTTAGATAAGATGTGTTCAGAATCGTTGTTAAAGAAACTACTTAACAACAAGTGCAATAAAATTTCATTTTGTTTTGTTGGTTCTAGTGTATGTTGAAAGTGCTCTTAATCAAATTAGAGATAAGTTTTGATAATCAATATTTTGAGAATGATGTGAAAATAATTACTACTACAAAACAATTAAGTGAAAGAAGAGTATAAATATCAGCGAGAGAAAGCGATTAGTGAAGTATTTTAACCATTTCATGATTAAGGGAGCCTTGATTGACCCCCAAAGTTGTGTAAAGAGCTTGATATTTCTGGATTGCTCATATTGACATGAAGTTCATTTGCAACTCTGTTCATTTTTTTTGTAGCATGATTTTCTTTTTAGAAGGCAATGAAAGCAATAGATACATTCAGGTTCGATCTTAGACAGTAAGTTTTTTGTGATTACAGAGCTGAAGAGGAAAATTGATAGATTTTATGAGGGTGACGTCGAGTCCTTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAGTGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAAGTTAATGTTAGATCATACATTTTCGGGTGGAAATGGTCAAATCTTGATAGCTTATTCAGGTTGGTCTATGGGAACCTCAACTCCTAACTTGGAGAACTTTGTTCCATGGGGAATTGTATGCTTTGTCTTTTAATGCCAAAAATTTGCAATAGTGTATTGTTGTACAATTGTGTGGATGTGAGATTGAGATTGAACTTCTAACCTCAAGGGAAGAGAAGAAGTGCATACTAATTACTATTCACTTCAGCTTCAT

mRNA sequence

GGGGATAAACCCTAGAACTGCGAAGAAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCACTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTATGAGGGTGACGTCGAGTCCTTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAGTGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAAGTTAATGTTAGATCATACATTTTCGGGTGGAAATGGTCAAATCTTGATAGCTTATTCAGGTTGGTCTATGGGAACCTCAACTCCTAACTTGGAGAACTTTGTTCCATGGGGAATTGTATGCTTTGTCTTTTAATGCCAAAAATTTGCAATAGTGTATTGTTGTACAATTGTGTGGATGTGAGATTGAGATTGAACTTCTAACCTCAAGGGAAGAGAAGAAGTGCATACTAATTACTATTCACTTCAGCTTCAT

Coding sequence (CDS)

ATGAAACGAGCTATATGGGGAGCTGTCTTCACTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTATGAGGGTGACGTCGAGTCCTTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAGTGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAA

Homology

[Close]

BLAST of CmoCh13G010460 vs. TrEMBL
Match: A0A0A0LT17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042590 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44
Identity = 115/164 (70.12%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRA+WGAVF   S  +S+SP L+T RS PLL  FSVS     R YSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTL---RRYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEG-DVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRVPGEVEDFK-DEEYDSDLSGELNESDEEMKEDSSEEEDRRV 163
           RQ++PGEVEDFK +EEYDSDL     + D     D SEEEDRR+
Sbjct: 121 RQQLPGEVEDFKGEEEYDSDLM----DDDSSDASDDSEEEDRRI 155

[Close]

BLAST of CmoCh13G010460 vs. TrEMBL
Match: A0A103Y8I5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_017205 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 32  LPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVES 91
           L SF       S+  SS  +  +  +   I+N+++  ++DVS+ EL+ +ID+FY+GD+E+
Sbjct: 27  LVSFDFRKYCSSKSESSSENPNSYYSEDEIQNENTANEEDVSSAELRTQIDKFYKGDIEA 86

Query: 92  LPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEE 150
           +PTIFE+ILKRKL+GKH ++DDELM E RQ  P EV    DE +DSD     ++SD E
Sbjct: 87  IPTIFESILKRKLAGKHEESDDELMNEFRQDQPSEV---SDEVFDSDTD---SDSDSE 138

[Close]

BLAST of CmoCh13G010460 vs. TrEMBL
Match: A0A0D2LVI9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067600 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 69  DDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVE 128
           +DDVSN+ELKR+I +F +GD +++P+IFE ILKRKLSGKH ++DDELMKEIR      ++
Sbjct: 39  NDDVSNKELKRRIQKFLDGDEDAIPSIFEGILKRKLSGKHEESDDELMKEIRGEWKQPLD 98

Query: 129 DFKDEEYDSDLS 141
           D  D E+DSDL+
Sbjct: 99  DADDLEFDSDLT 110

[Close]

BLAST of CmoCh13G010460 vs. TrEMBL
Match: A0A067E7F8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014729mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 30  PLLPSFSVSISSQSRCYSS-----GNDKY-------NGLNSTTIENKDSLVDDDVSNEEL 89
           P +P  + S  +Q R YSS      ND+          L + T +   S+  +DVSN+EL
Sbjct: 25  PFIPPLAASTRTQLRLYSSDSKDSSNDQRAPDPAPETALTAQTQKKDVSIDVEDVSNKEL 84

Query: 90  KRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDS 149
           K +ID++++GD E+LP+I EAIL+R+L GKH + DDEL +E+R +    ++D KD+E++S
Sbjct: 85  KMRIDKYFKGDEEALPSILEAILQRRLVGKHEETDDELTEELRLK---PLDDVKDQEFES 144

Query: 150 DLSGELNESDEEMKE 153
           D   EL  +DEE+ +
Sbjct: 145 DFE-ELYATDEEIDD 155

[Close]

BLAST of CmoCh13G010460 vs. TrEMBL
Match: D7SJ33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03250 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 54/131 (41.22%), Postives = 86/131 (65.65%), Query Frame = 1


Query: 30  PLLPSFSVSISSQSRCYSSGNDKYNG----LNSTTI---ENKDSLVD-DDVSNEELKRKI 89
           P+  S S S + + R +SS ND        L  T++   + K+  +D  DVSN+ELK +I
Sbjct: 30  PISSSASASSAFKFRFFSSENDSSTENPKPLEETSLAQPQKKEVSIDVPDVSNKELKMRI 89

Query: 90  DRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSG 149
           +++++GD E+LP+I EAI+ RKL+GKH D DDELM E+R +    ++D KD++++SD   
Sbjct: 90  EKYFKGDEEALPSILEAIMARKLAGKHEDTDDELMDELRLQ---PLDDVKDKDFESDFE- 149

Query: 150 ELNESDEEMKE 153
           E+ E+DEE+ +
Sbjct: 150 EIYETDEEIDD 156

[Close]

BLAST of CmoCh13G010460 vs. TAIR10
Match: AT3G18240.1 (AT3G18240.1 Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 70.9 bits (172), Expect = 8.4e-13
Identity = 54/151 (35.76%), Postives = 94/151 (62.25%), Query Frame = 1


Query: 13  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIEN------- 72
           C+RR+ +SP +  Q   + P L   +   + + R +SS +    G NSTT          
Sbjct: 12  CARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSSES----GENSTTAPESSPTDSP 71

Query: 73  -KDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQ 132
            K  LV +DVSN+ELK +I++++ EG+ ++LP + EA+L+R+L  KH + DDEL+++I +
Sbjct: 72  EKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI-E 131

Query: 133 RVPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
            +P + +D KDE+++SD   E + +DEE+++
Sbjct: 132 SLPFK-DDVKDEDFESDFE-EAHSTDEELED 155

[Close]

BLAST of CmoCh13G010460 vs. TAIR10
Match: AT4G21460.1 (AT4G21460.1 Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 1


Query: 7   GAVF---TACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI-- 66
           GA+F   + C+RR+ +S  +    + P L   +     + R +SS +    G NSTT   
Sbjct: 3   GALFRNASLCARRIILSSRISP--NVPFLTPIAAPAPPKFRFFSSES----GENSTTATE 62

Query: 67  ------ENKDSLVDDDVSNEELKRKIDR-FYEGDVESLPTIFEAILKRKLSGKHGDADDE 126
                  +K  LV +DVSN+ELK +ID+ F EG+ ++LP + EA+L+R+L  KH + DDE
Sbjct: 63  SSPTDSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDE 122

Query: 127 LMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
           LM++I + +P + +D KDE+++SD   E + +DEE+++
Sbjct: 123 LMEKI-ESLPFK-DDVKDEDFESDFE-EAHSTDEELED 151

[Close]

BLAST of CmoCh13G010460 vs. TAIR10
Match: AT1G73770.1 (AT1G73770.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 31  LLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYE-GDV 90
           ++P F  +IS +   +SS +D   G  +  +          +S EELK++I  F + G+ 
Sbjct: 34  VVPLFERAIS-RFVFFSSESDSSRGFRTEEV----------LSKEELKKRIQSFLDDGNE 93

Query: 91  ESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEE 150
           +++P +FEA++ RKLSGKH D+DDE+M  +R+    +     D + D +  G  + SD +
Sbjct: 94  DAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSD 152

Query: 151 MKEDSSEEED 160
           ++ D   + D
Sbjct: 154 IESDDLRDGD 152

[Close]

BLAST of CmoCh13G010460 vs. NCBI nr
Match: gi|659066786|ref|XP_008461340.1| (PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-47
Identity = 113/163 (69.33%), Postives = 127/163 (77.91%), Query Frame = 1


Query: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRA+WGAVF  CSR +S+SP L+T RS PLL  FSV      RCYSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTL---RCYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEG-DVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV 163
           RQR+PGE+EDFK EEYDS+L+ +            SEEED+R+
Sbjct: 121 RQRMPGEIEDFKGEEYDSELTDD--------AASDSEEEDKRI 150

[Close]

BLAST of CmoCh13G010460 vs. NCBI nr
Match: gi|449439425|ref|XP_004137486.1| (PREDICTED: histone chaperone RTT106 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44
Identity = 115/164 (70.12%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60
           MKRA+WGAVF   S  +S+SP L+T RS PLL  FSVS     R YSSGNDKYN LNST 
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTL---RRYSSGNDKYNELNST- 60

Query: 61  IENKDSLVDDDVSNEELKRKIDRFYEG-DVESLPTIFEAILKRKLSGKHGDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYEG D +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120

Query: 121 RQRVPGEVEDFK-DEEYDSDLSGELNESDEEMKEDSSEEEDRRV 163
           RQ++PGEVEDFK +EEYDSDL     + D     D SEEEDRR+
Sbjct: 121 RQQLPGEVEDFKGEEEYDSDLM----DDDSSDASDDSEEEDRRI 155

[Close]

BLAST of CmoCh13G010460 vs. NCBI nr
Match: gi|976919599|gb|KVI04479.1| (hypothetical protein Ccrd_017205 [Cynara cardunculus var. scolymus])

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 32  LPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVES 91
           L SF       S+  SS  +  +  +   I+N+++  ++DVS+ EL+ +ID+FY+GD+E+
Sbjct: 27  LVSFDFRKYCSSKSESSSENPNSYYSEDEIQNENTANEEDVSSAELRTQIDKFYKGDIEA 86

Query: 92  LPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEE 150
           +PTIFE+ILKRKL+GKH ++DDELM E RQ  P EV    DE +DSD     ++SD E
Sbjct: 87  IPTIFESILKRKLAGKHEESDDELMNEFRQDQPSEV---SDEVFDSDTD---SDSDSE 138

[Close]

BLAST of CmoCh13G010460 vs. NCBI nr
Match: gi|823121972|ref|XP_012468966.1| (PREDICTED: uncharacterized protein LOC105787061 [Gossypium raimondii])

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 69  DDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVE 128
           +DDVSN+ELKR+I +F +GD +++P+IFE ILKRKLSGKH ++DDELMKEIR      ++
Sbjct: 39  NDDVSNKELKRRIQKFLDGDEDAIPSIFEGILKRKLSGKHEESDDELMKEIRGEWKQPLD 98

Query: 129 DFKDEEYDSDLS 141
           D  D E+DSDL+
Sbjct: 99  DADDLEFDSDLT 110

[Close]

BLAST of CmoCh13G010460 vs. NCBI nr
Match: gi|1009131376|ref|XP_015882805.1| (PREDICTED: uncharacterized protein LOC107418614 [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 64/170 (37.65%), Postives = 98/170 (57.65%), Query Frame = 1


Query: 1   MKRAIWGAVFTACSRRV------SISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYN 60
           MKRA+  ++      R+      + SP    +R    +PS    +S   R YSS ND  N
Sbjct: 1   MKRALLRSISLFARNRILSPPSCNSSPSFSPIRCAAPIPS---KLSLGVRLYSSENDSSN 60

Query: 61  G------------LNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKR 120
                         N T  E KD  ++D VS++ELK +I+++++GD E+LP I EAIL+R
Sbjct: 61  ENTTSPVPESVPETNLTKPEKKDVTIED-VSDKELKMRIEKYFKGDEEALPDILEAILQR 120

Query: 121 KLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE 153
           KL+GKH + DDELM+E+R +    ++D KD+E++SD   EL ++DEE+ +
Sbjct: 121 KLAGKHEETDDELMEELRMQ---PLDDVKDKEFESDFE-ELYKTDEEIDD 162

The following BLAST results are available for this feature:

BLAST of CmoCh13G010460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G010460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT17_CUCSA	1.6e-44	70.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042590 PE=4 SV=1	[more]
A0A103Y8I5_CYNCS	1.7e-14	44.92	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_017205 PE=4 ...	[more]
A0A0D2LVI9_GOSRA	5.0e-14	59.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067600 PE=4 SV=1	[more]
A0A067E7F8_CITSI	6.1e-12	40.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014729mg PE=4 SV=1	[more]
D7SJ33_VITVI	1.0e-11	41.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03250 PE=4 SV=...	[more]

BLAST of CmoCh13G010460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18240.1	8.4e-13	35.76	Ribosomal protein S24/S35, mitochondrial	[more]
AT4G21460.1	1.1e-12	36.71	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	5.3e-07	30.77	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh13G010460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066786\|ref\|XP_008461340.1\|	6.4e-47	69.33	PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo]	[more]
gi\|449439425\|ref\|XP_004137486.1\|	2.3e-44	70.12	PREDICTED: histone chaperone RTT106 [Cucumis sativus]	[more]
gi\|976919599\|gb\|KVI04479.1\|	2.5e-14	44.92	hypothetical protein Ccrd_017205 [Cynara cardunculus var. scolymus]	[more]
gi\|823121972\|ref\|XP_012468966.1\|	7.1e-14	59.72	PREDICTED: uncharacterized protein LOC105787061 [Gossypium raimondii]	[more]
gi\|1009131376\|ref\|XP_015882805.1\|	2.7e-13	37.65	PREDICTED: uncharacterized protein LOC107418614 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G010460.1	CmoCh13G010460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G010460	Cucsa.111230	Cucumber (Gy14) v1	cgycmoB0263
CmoCh13G010460	Cucsa.121720	Cucumber (Gy14) v1	cgycmoB0314
CmoCh13G010460	CmaCh11G002900	Cucurbita maxima (Rimu)	cmacmoB125
CmoCh13G010460	CmaCh13G010080	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G010460	Cla018955	Watermelon (97103) v1	cmowmB202
CmoCh13G010460	Cla018477	Watermelon (97103) v1	cmowmB194
CmoCh13G010460	Csa1G042590	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G010460	Csa1G024260	Cucumber (Chinese Long) v2	cmocuB207
CmoCh13G010460	MELO3C002109	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G010460	MELO3C017325	Melon (DHL92) v3.5.1	cmomeB191
CmoCh13G010460	ClCG04G010900	Watermelon (Charleston Gray)	cmowcgB191
CmoCh13G010460	ClCG06G014600	Watermelon (Charleston Gray)	cmowcgB195
CmoCh13G010460	CSPI01G06990	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G010460	CSPI01G04010	Wild cucumber (PI 183967)	cmocpiB209
CmoCh13G010460	Lsi02G002110	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G010460	Lsi06G013140	Bottle gourd (USVL1VR-Ls)	cmolsiB206
CmoCh13G010460	Cp4.1LG20g01330	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G010460	Cp4.1LG18g07070	Cucurbita pepo (Zucchini)	cmocpeB195
CmoCh13G010460	MELO3C002109.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G010460	MELO3C017325.2	Melon (DHL92) v3.6.1	cmomedB213
CmoCh13G010460	CsaV3_1G004020	Cucumber (Chinese Long) v3	cmocucB0238
CmoCh13G010460	CsaV3_1G006930	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G010460	Cla97C04G077710	Watermelon (97103) v2	cmowmbB216
CmoCh13G010460	Cla97C06G124120	Watermelon (97103) v2	cmowmbB222
CmoCh13G010460	Bhi08G001051	Wax gourd	cmowgoB0258
CmoCh13G010460	CsGy1G003930	Cucumber (Gy14) v2	cgybcmoB071
CmoCh13G010460	Carg15161	Silver-seed gourd	carcmoB1065
CmoCh13G010460	Carg09124	Silver-seed gourd	carcmoB0810
CmoCh13G010460	Carg04829	Silver-seed gourd	carcmoB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G010460	CmoCh10G003320	Cucurbita moschata (Rifu)	cmocmoB055
CmoCh13G010460	CmoCh11G002950	Cucurbita moschata (Rifu)	cmocmoB089

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G010460	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh13G010460	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G010460	Cucurbita pepo (Zucchini)	cmocpeB183
CmoCh13G010460	Cucurbita pepo (Zucchini)	cmocpeB212
CmoCh13G010460	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G010460	Silver-seed gourd	carcmoB0698