CsaV3_1G006930.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G006930.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosomal protein S24/S35
Location	chr1 : 4393715 .. 4395418 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGAAACGTTTCTTCGATCATAAACCCTCAGAAAATGGGTCTAAACCCTAAAACTGTAAAGAAACGCCATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGGTAAATTAGTATTCAATTTGAAAATCATTTCTCAAATTTGGGCACTGTGGACTATACTCTCCAGGAATTTCTAAGCATGAGTCATCGCCTTCTATCATATTTTATTGGTATAGCTCATAATTGTGGGATTTCAAGTTCAGAGATCTTTTTTTTTACTTTCAAATTGTGTCTTCATTTCATGAGATGGTTCTTCGTAATTTTACAGTTGGTCGGATAATTGCCATGTTTTTTTTTGCCTTACTTAAGATTATTGTACATTTTTTTGTCATTCTGTTGAAAACTGATATGAAGAGGTATATTTTTTCCAGTTTAATTGTTTGAGTTCTTGAGTTGATGTTAGTTTAGCACCATAGTTGACTATAAAATCTTGGATTTATATCCTCTTCTCACGTGTAGGTTGTTTAATTCTGGAAATTTTAGAATAGATGTGTTAAGAAGCGTTTGTTGAAGAAAGTACTTTTAATCAAGAGACTTCCGTTATAAGTAACCGGAAAAGTAGTGAAATGAAAGTTGATTTTGTTTGTTGGTTGTTGGTTCTGTATATTGGAAGTTCTTTTAATTAAATTAGAGATAGGTTTTGAATGAATATTTTGAGAAAGATGTGAGAATAATTAGAATTACAAAGCAATTAAGTGAGGAAAATAGAGATCAATGAGAGAAAGCAAAAGAGCTCAGAAAAATAGAAGGGAAATCTGGAAAAGAAAGTGAGTAGAAAGAGTTTAGTGCAAAGAGATATTAAGAAAAAGGTGTTCACAGAGAAATGTTAATGAAAGAGTTTGTATTTTGAGAAATGAAGGATAATGTATTTTAGTCAAAGATACTTGATAGAACATCTATGATCTACCATTCACTTGTTCAAAAAATACGACTGATCTTAGTGAAATTAACCATTTAAATAGTACTTCTGTTAAAAGATGTGTAAAGTTCTTGTTATTTCTGGATCAATTTTTGGTAGTATGATTAATTTTTGTTTTTGAGCTTCTTCATTTGGTGTTCCTTTTCTGGAATCTTAGACTTATGATTTAGAAGCTAATACAGAAATGATTTATCTGTGAATTCAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAAGATAATGCGAAGCTTATAGTTTATGATGATGTTAGATTATTTTACGTTTTAAGTGAATTCTATCCCCCAACTTTTACTTACTTCAATTCAATTGGATGGAGTGGGC

mRNA sequence

ATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAA

Coding sequence (CDS)

ATGAAGCGAGCTTTATGGGGAGCTGTCTTCCACGTCTATTCTGGCACGCTTTCCGTTTCTCCTCCGCTACGAACATTTCGTTCCCGCCCCTTACTGTCTCCATTTTCCGTTTCCACTTTGCGACGTTACTCATCCGGGAATGACAAGTACAATGAACTGAACTCAACCAAAAACAAGGACTCTCTCGTCGACGATGATGTCAGCACCGAAGAGCTGAAGAGGAAAATTGATAAATTTTACGAGGGTGGTGATGCCGATTCGTTACCAGCAATTTTCGAAGCAATATTGAAAAGGAAGCTATCGGGTAAACACGAAGATGCTGATGATGAGCTGATGAAAGAAATTCGACAGCAATTGCCCGGAGAAGTTGAAGATTTTAAAGGTGAAGAAGAATATGATTCAGATTTAATGGACGATGATTCCAGTGATGCCAGTGATGATTCTGAGGAAGAAGATAGAAGAATATAA

Protein sequence

MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSDLMDDDSSDASDDSEEEDRRI

Homology

[Close]

BLAST of CsaV3_1G006930.1 vs. NCBI nr
Match: XP_004137486.1 (PREDICTED: histone chaperone RTT106 [Cucumis sativus] >KGN64149.1 hypothetical protein Csa_1G042590 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 5.0e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120

Query: 121 GEVEDFKGEEEYDSDLM 138
           GEVEDFKGEEEYDSDLM
Sbjct: 121 GEVEDFKGEEEYDSDLM 137

[Close]

BLAST of CsaV3_1G006930.1 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 8.6e-45
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTL---RRYSSGNDKYNELNST- 60
           MKRA+WGAVF V S  +S+SP L+T RS PLL PFSVS     R YS+GNDKYN LNST 
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
           RQ++PGEVEDFK +EEYDSDL
Sbjct: 121 RQRMPGEVEDFK-DEEYDSDL 139

[Close]

BLAST of CsaV3_1G006930.1 vs. NCBI nr
Match: XP_008461340.1 (PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 103/136 (75.74%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVF+V S TLSVSPPLRTFRS PLLSPFSV TLR YSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLP IFEAIL                      +P
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILXXXXXXXXXXXXXXXXXXXXXXMP 120

Query: 121 GEVEDFKGEEEYDSDL 137
           GE+EDFKG EEYDS+L
Sbjct: 121 GEIEDFKG-EEYDSEL 135

[Close]

BLAST of CsaV3_1G006930.1 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 1.6e-43
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSV---STLRRYSSGNDKYNELNST- 60
           MKRA+WGAVF   S  +S+SP L+T RS PLL  FSV   S  R YSSGNDKYN LNST 
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
           RQ++PGEVEDFK +EEYDSDL
Sbjct: 121 RQRVPGEVEDFK-DEEYDSDL 139

[Close]

BLAST of CsaV3_1G006930.1 vs. NCBI nr
Match: XP_023000953.1 (uncharacterized protein LOC111495236 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-42
Identity = 104/141 (73.76%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSV---STLRRYSSGNDKYNELNST- 60
           MKRA+WGAVF   S  +S+ P L+T RS PLL PFSV   S  R YSSGNDKYN LNST 
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  -KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEI 120
            +NKDSLVDD VS EELKRKID+FYE GD +SLP IFEAILKRKLSGKH DADDELMKEI
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYE-GDVESLPTIFEAILKRKLSGKHGDADDELMKEI 120

Query: 121 RQQLPGEVEDFKGEEEYDSDL 137
            Q++PGEVEDFK +EEYDSDL
Sbjct: 121 LQRMPGEVEDFK-DEEYDSDL 139

[Close]

BLAST of CsaV3_1G006930.1 vs. TAIR10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 30  PLLSPFSVSTLRRYSSGNDKYNELNST---------KNKDSLVDDDVSTEELKRKIDKFY 89
           P L+P +     ++   + +  E ++T          +K  LV +DVS +ELK +IDK +
Sbjct: 27  PFLTPIAAPAPPKFRFFSSESGENSTTATESSPTDSSDKKDLVVEDVSNKELKSRIDKSF 86

Query: 90  EGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSD 136
             G+ D+LP + EA+L+R+L  KH + DDELM++I + LP   +D   +E+++SD
Sbjct: 87  NEGNEDALPGVIEALLQRRLVDKHAETDDELMEKI-ESLP--FKDDVKDEDFESD 138

[Close]

BLAST of CsaV3_1G006930.1 vs. TAIR10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial)

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-10
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 30  PLLSPFSVSTLRRYSSGNDKYNELNST---------KNKDSLVDDDVSTEELKRKIDKFY 89
           P L+P +     ++   + +  E ++T           K  LV +DVS +ELK +I+K++
Sbjct: 31  PFLAPIAAPAAPKFRFFSSESGENSTTAPESSPTDSPEKKDLVVEDVSNKELKSRIEKYF 90

Query: 90  EGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYDSD 136
             G+ D+LP + EA+L+R+L  KH + DDEL+++I + LP   +D   +E+++SD
Sbjct: 91  NEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI-ESLP--FKDDVKDEDFESD 142

[Close]

BLAST of CsaV3_1G006930.1 vs. TAIR10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 55  STKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKE 114
           S  ++    ++ +S EELK++I  F + G+ D++P +FEA++ RKLSGKH+D+DDE+M  
Sbjct: 52  SDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDV 111

Query: 115 IRQQLPGEVEDFKGEEEYDSDL 137
           +R+     V D    ++ DSD+
Sbjct: 112 VRKY---PVNDAHKVDDIDSDI 130

[Close]

BLAST of CsaV3_1G006930.1 vs. TrEMBL
Match: tr|A0A0A0LT17|A0A0A0LT17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.3e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120

Query: 121 GEVEDFKGEEEYDSDLM 138
           GEVEDFKGEEEYDSDLM
Sbjct: 121 GEVEDFKGEEEYDSDLM 137

[Close]

BLAST of CsaV3_1G006930.1 vs. TrEMBL
Match: tr|A0A1S3CEX3|A0A1S3CEX3_CUCME (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-44
Identity = 103/136 (75.74%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNSTKNKD 60
           MKRALWGAVF+V S TLSVSPPLRTFRS PLLSPFSV TLR YSSGNDKYNELNSTKNKD
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNSTKNKD 60

Query: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLP 120
           SLVDDDVSTEELKRKIDKFYEGGDADSLP IFEAIL                      +P
Sbjct: 61  SLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILXXXXXXXXXXXXXXXXXXXXXXMP 120

Query: 121 GEVEDFKGEEEYDSDL 137
           GE+EDFKG EEYDS+L
Sbjct: 121 GEIEDFKG-EEYDSEL 135

[Close]

BLAST of CsaV3_1G006930.1 vs. TrEMBL
Match: tr|A0A2U1PKV3|A0A2U1PKV3_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA141040 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 57  KNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIR 116
           KN+++ V DDVS+ ELK +IDKFY+ GD +++P IFE+ILKRKLSGKHED+DDELM E R
Sbjct: 51  KNENAGVTDDVSSAELKAQIDKFYKEGDIEAIPNIFESILKRKLSGKHEDSDDELMNEFR 110

Query: 117 QQLPGEV--EDFKGEEEYDSD 136
              P EV  EDF  E E DSD
Sbjct: 111 VDQP-EVNDEDFDSESESDSD 130

[Close]

BLAST of CsaV3_1G006930.1 vs. TrEMBL
Match: tr|A0A2I4GT88|A0A2I4GT88_9ROSI (uncharacterized protein LOC109010669 OS=Juglans regia OX=51240 GN=LOC109010669 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 53/118 (44.92%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 30  PLLSPFSVST----LRRYSSGNDKYNE---------LNSTKNKD-SLVDDDVSTEELKRK 89
           PLL+P + ST    LR YSS ND   E         L +++NKD S+  +DVS ++LK +
Sbjct: 31  PLLAPLAPSTTRPRLRFYSSENDSSGENPTPAPETSLATSQNKDSSIAVEDVSNKDLKTR 90

Query: 90  IDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGEEEYD 134
           I+K+++ GD ++LP+I EAIL+RKL+GKHED DDELM+E+R +   +V+D + E +++
Sbjct: 91  IEKYFK-GDEEALPSILEAILQRKLAGKHEDTDDELMEELRMKPLDDVKDKEFESDFE 147

[Close]

BLAST of CsaV3_1G006930.1 vs. TrEMBL
Match: tr|A0A2P4H4U7|A0A2P4H4U7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65292 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 36  SVSTLRRYSSGNDKYNELNSTKNKDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAI 95
           ++S LR YSS  +  N  ++ K   S+ ++D+S  ELK+ IDKFY  GDA+++P+IFEAI
Sbjct: 24  TLSRLRLYSSNGNGSNLTHTQKPNSSVDEEDISNPELKKLIDKFY-AGDAEAIPSIFEAI 83

Query: 96  LKRKLSGKHEDADDELMKEIRQQLPGEVEDFKGE----EEYDSDL 137
           LKRKL+GK+E+AD ELM+EI  +     +D   E    EE++SDL
Sbjct: 84  LKRKLAGKYEEADKELMEEIVGKTHESSDDIDDEELSDEEFESDL 127

The following BLAST results are available for this feature:

BLAST of CsaV3_1G006930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137486.1	5.0e-69	100.00	PREDICTED: histone chaperone RTT106 [Cucumis sativus] >KGN64149.1 hypothetical p...	[more]
XP_023519890.1	8.6e-45	75.89	uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]	[more]
XP_008461340.1	3.3e-44	75.74	PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo]	[more]
XP_022924024.1	1.6e-43	75.18	uncharacterized protein LOC111431572 [Cucurbita moschata]	[more]
XP_023000953.1	4.0e-42	73.76	uncharacterized protein LOC111495236 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G006930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21460.1	2.9e-10	34.78	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.1	4.9e-10	33.04	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	8.4e-10	39.02	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CsaV3_1G006930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G006930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT17\|A0A0A0LT17_CUCSA	3.3e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1	[more]
tr\|A0A1S3CEX3\|A0A1S3CEX3_CUCME	2.2e-44	75.74	uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=...	[more]
tr\|A0A2U1PKV3\|A0A2U1PKV3_ARTAN	3.6e-15	62.96	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA141040 PE=4 SV=1	[more]
tr\|A0A2I4GT88\|A0A2I4GT88_9ROSI	3.4e-13	44.92	uncharacterized protein LOC109010669 OS=Juglans regia OX=51240 GN=LOC109010669 P...	[more]
tr\|A0A2P4H4U7\|A0A2P4H4U7_QUESU	5.7e-13	47.62	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_65292 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G006930	CsaV3_1G006930	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006930.1.cds2	CsaV3_1G006930.1.cds2	CDS
CsaV3_1G006930.1.cds1	CsaV3_1G006930.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006930.1.exon2	CsaV3_1G006930.1.exon2	exon
CsaV3_1G006930.1.exon1	CsaV3_1G006930.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G006930.1	CsaV3_1G006930.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..125