CsaV3_1G000620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G000620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	SAP domain-containing protein
Location	chr1 : 354128 .. 357620 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTATAGAGTCAGCAATGATTGGAATTGGGGCATTAAAATTCCAAAACGAAGAGCGTAAAACTTGAGATAAAATTTTGAGGTGCGTTCGTCACGCACACAAAGAGGCCGCAAAGATTTTACCACGCTTGGAATGTTTCCACTCCCGTGAATTTAGCGAAGTGGGTTTTTTCTCTATCATTCGGATTTGACTGATCATCTTTCTCTCTTGTTCTTTGCGAGGGTTTCTCGCCATGGCGCCTTCCTCTTCTTCTTCTGGTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTTCTTCTCTTCCACCGTTCCCTCCTCAAATCCGGTAATGTTTCTTCTACTCTTCTTTGAAATATTGCTATTTTCTATGATTTTGTGTATTTTCTCACATTTGTATACATTTACTTTAGTAAAATTCCATTTAGTGATCAATTATGTACAGTTTAATCAATCACTTTGATCCGAAGACATGGGAATTTTACGTCTTTGTGTTTTGTAACACAATGCATTTGAGTCTCAGCATTTAAGACTTAAGAGGGGTTGAATCTCTCTTCGTTTTAGAATTATTCAAAAGAATGCTTTAAGGGATTCTGCTGCGTTCCTCCCTACTGTCATTTTTTAGGCTTAAATAATATTAGCAATCAAAGACCAACCAGTTGTTTACAGGTATAAAAGCTTGGTAATTTGAGTTTTCCTATGGCTAGGTTTTGTGATAATGCATTTGGGTGGTCTGAGTGTTTGAGTTATTGAGTTCGTTATCACTCTAGTTTGAAGTATAAGAACTTGGTAATTCGAGTTTTCATATGGCTAGGTTTTGCAATGATGCATTTGGGTGATCCGAGTGTTTGAGCTGTTGAGTTCGTTATCACTTTAGTCTGAATCATTGAACTTATCATCTTTGCTGAGAAATCAATGAAGTTTCTTTCTTTTTCTAGTTCTTTTTCTTTGGCATTCTAGTCATTTGTGTGTATTTATCGAGATTATTATCTATATTGAAACAATATGTTTTTCAATATGTTCTTCAATATGAACATGCAGGGAAGTATGCGGGTGTACATCTGCCTTCATGACACTGCACCGCCAGGTGATCTTTTTGTTTCTCTACATAATTATTTTACTAAACATAAAGCAACAGTTTAAGTTCATAAGACAGTGGACATGCCATGAAGCAGCACTGTAAGTATGTAAGACTGAACCATTGTTCACTAGATATTTGGTTTACAGAAGAAATGAGAAAGGATAATCATAGTGCTCGTGCAGGGCTCTATAAATGTTTGAAACCAAAAGTTCATTTTGTATAATTAAGGTTGCTGATTGGTTATTTTATAGATTTTGTGAACTGTACACTGTGAGATCAAACGATATTTGTGGGATGTGTAATGTGTTATGGTCACATTATCAGGAATGAGATCTGAGATTCATATTGAATCATGATTCTACTGAATAGTTCTTGCTACTCTTTGGAAGAGCCAAATGCACCAACCACCTTGCCATTATATGTTTATTTTCCCCTCTTCTTCTTATTTTAAGTTACCTATTATGAACACATAAAAGATTGATAAATGTTTATCCCCATCTTCCATCCAGAGGATCAAGAAATCAAGACAAACCAGCAGAATATACTAATTAGATCTTTGATGCTTAAAAATTCCAGCTCGAAGGATGGAAAAGGAGTAGCTACAGGGGAGTCATCTCGAAAGAGGTACCATCATGACGGATGATCTTTTTAGATTGCTAGTTGGTCAATTTTTGTTTAAATTGTCAGATTTCGCTGCATCTTCTTGCATATGTAGCACTGGATGCAAACAATGGATTGTTGTTTTGTTTCTTATAACATGATGCTTGTAGGCATATTCCTTTTTTTTTCTTTGTTGGAATACATAATTTTGGTTTTGACTTCTATGTAATATTAAGTCTCAGTTATGGTACCCTGATATTTCCAGGGCTGGGGAAAAAATTTCAGATAGCAGAGCAAAGAAGGCCGCACAAGTATGTTCATCCAAAGGTAAGTTCTGCTCGATCATGTATTCTGAGGATAAATTGGTTGACTGACCCTTACTCCTTGCATATGTTCTTCACTAGAGTTGAAATTCAATGTCTGTGCAGCGGGTTATTAATGCAGTCTTGGGGCATTTATTTTCCCCCATTATTTTTCTTAGTCGTCATATTTATATATTTGGTTAGAAACCTAACTAAGAATATGAGGTCGTTAGAGAAAACAATCCTCCAGAAACAGGAGTTTCACACTAACAACAAAAACAACTCCAGTCCAAAAGAACGAGAACAATGTCATAAGATTACAGTACGGTCTAATGATTGACGCCCTAACAGAAATATTAAACTTCCTTCTTAGATTTCTCAACATCCCTGCATCTATTTTCTTAGGCATTATATAGATCAGGTGCTTTCCTGGGATCTTAAATTAATTGTGGATAAAAAAAATGTTGCCCAGTATGTTGTCTAAACAAGAATGAAAGAACAAAAATTGGGGATTACCTAGAATACCAGCAGCCTACAATGTTATAGATTGTGGTTGTAAACAACCTTTTACATGGTATAGATAATGGTTGTGTTCTGCATATTAACAAGAAAAATCTTACCCCTTAAAGAACCCAGTGCATCATACTTTCTTTAGCGGTTAACGTCTAGAAATACGCCCAACAGTTAAATTAGTTATCGTATATTTGCAAATTAAAACACAGGCCATTCAGGGGAGGATGTTTTTTAACTCTTTATTTTCTAATCGATTTATGTTTTCATGTCCAAATCTGATTATTATATGGTTGCTATCATTCATCCAGGAGCATCAAACAATGAAACACCAACTAAGGATCTACAGAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCTAAAGGCCTCTCGCTCAGAGGAAAGAAGGCAAGTATATTCTATTGTGTAACCAATCTTGTTGAATAAGTAAATGGATGCAAGTAATTTTTAAATGGTTAAAATCACTTTTGTTCTATATTCAATATCACTTCCAACCATGCTCCAAACTGGTGTTTGAGGATTTTTTGACCAATCTGGTGCAGGATGAATTAATTGCCCGTTTGAGAAGCGCGGATGGGTAGACGATGACTGCTAAAGGAGTGAAACATCTGTCAGCTGCAAATCTTCATCGGCATAATTAGGCAAATGAAACCGAGGAAGTTGTGGATTACTGTTTTCTCAACATTTAAATGTGTAGTTAGGAGTAGTTTGGGTGTACTTAGAATTTGCACCAATGGTGGTTTTTGGAAAACCAAGGCGCTGATCCATTAATATCTGTATTCATTTTGATGATGGGAACAAAGCGTTCATAGTTATAAATTACAGAGATGAATTAAGGTGTGTTTTTCTCACTTTCTTTGTTTAAATCTTCTCTATTTGAAATTCTCCTATGGTTTCGAGACATTTTTTTAACTGGATACTTAGTTTAAGTGACGTCTTAAGGCTTATTTTCTAAAACATTCCAG

mRNA sequence

ATGGCGCCTTCCTCTTCTTCTTCTGGTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTTCTTCTCTTCCACCGTTCCCTCCTCAAATCCGGGAAGTATGCGGGTGTACATCTGCCTTCATGACACTGCACCGCCAGAGGATCAAGAAATCAAGACAAACCAGCAGAATATACTAATTAGATCTTTGATGCTTAAAAATTCCAGCTCGAAGGATGGAAAAGGAGTAGCTACAGGGGAGTCATCTCGAAAGAGGGCTGGGGAAAAAATTTCAGATAGCAGAGCAAAGAAGGCCGCACAAGTATGTTCATCCAAAGGAGCATCAAACAATGAAACACCAACTAAGGATCTACAGAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCTAAAGGCCTCTCGCTCAGAGGAAAGAAGGATGAATTAATTGCCCGTTTGAGAAGCGCGGATGGGTAG

Coding sequence (CDS)

ATGGCGCCTTCCTCTTCTTCTTCTGGTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTTCTTCTCTTCCACCGTTCCCTCCTCAAATCCGGGAAGTATGCGGGTGTACATCTGCCTTCATGACACTGCACCGCCAGAGGATCAAGAAATCAAGACAAACCAGCAGAATATACTAATTAGATCTTTGATGCTTAAAAATTCCAGCTCGAAGGATGGAAAAGGAGTAGCTACAGGGGAGTCATCTCGAAAGAGGGCTGGGGAAAAAATTTCAGATAGCAGAGCAAAGAAGGCCGCACAAGTATGTTCATCCAAAGGAGCATCAAACAATGAAACACCAACTAAGGATCTACAGAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCTAAAGGCCTCTCGCTCAGAGGAAAGAAGGATGAATTAATTGCCCGTTTGAGAAGCGCGGATGGGTAG

Protein sequence

MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSADG

Homology

[Close]

BLAST of CsaV3_1G000620 vs. NCBI nr
Match: XP_004138052.1 (PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus] >KGN63488.1 hypothetical protein Csa_1G002080 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 3.6e-75
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. NCBI nr
Match: XP_008464442.1 (PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 5.2e-74
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVAT ESSRKRAGEKISDSRAKKAAQVCSSKGASNNETP+KDL
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPSKDL 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. NCBI nr
Match: XP_022928285.1 (uncharacterized protein LOC111435158 [Cucurbita moschata] >XP_023001409.1 uncharacterized protein LOC111495549 [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 137/155 (88.39%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MA S+SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVA  ESSRKRAGEKISD RAK+ AQV S KGASN+ETP+KD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKA+GLSL+GKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKARGLSLKGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. NCBI nr
Match: XP_023529915.1 (uncharacterized protein LOC111792623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 136/155 (87.74%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MA ++SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MASTASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVA  ESSRKRAGEKISD RAK+ AQV S KGASN+ETP+KD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKA+GLSL+GKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKARGLSLKGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. NCBI nr
Match: XP_023553647.1 (uncharacterized protein LOC111811137 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MA S+SSS  GASKFLGDLPS G+FSSTVPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MASSASSSAPGASKFLGDLPSHGYFSSTVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVA  ESSRKRAGEKISDSRAK+A QV S+KGAS++ TP+KDL
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDSRAKRAVQVRSTKGASSSATPSKDL 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           Q+LTVERLRALLKAKGLSL+G+KD+LIARLRS DG
Sbjct: 121 QSLTVERLRALLKAKGLSLKGRKDDLIARLRSVDG 155

[Close]

BLAST of CsaV3_1G000620 vs. TAIR10
Match: AT5G63460.4 (SAP domain-containing protein)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-33
Identity = 87/166 (52.41%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 5   SSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPP------------EDQ 64
           S SS   ASKFL DLPSRGF SSTV SSNPGS+RVYIC HDT+PP            + Q
Sbjct: 9   SDSSDQTASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPVIGSLRIISFRIKGQ 68

Query: 65  EIKTNQQNILIRSLMLK----NSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSK 124
            IKTNQQNILIRSL+LK     SSSKD KG A     ++ A   + D  +          
Sbjct: 69  LIKTNQQNILIRSLLLKKQKGESSSKDSKGTAEDGPKKRAANRALDDRSSAXXXXXXXXX 128

Query: 125 GASNNETPTKDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSAD 155
              ++ T  +D Q+LTVE+LRA+LK KGL  +G+KDELIARL+SA+
Sbjct: 129 XXXSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIARLKSAN 174

[Close]

BLAST of CsaV3_1G000620 vs. TrEMBL
Match: tr|A0A0A0LNX7|A0A0A0LNX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002080 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-75
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. TrEMBL
Match: tr|A0A1S3CLX1|A0A1S3CLX1_CUCME (uncharacterized protein LOC103502327 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.4e-74
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60
           MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120
           ILIRSLMLKNSSSKDGKGVAT ESSRKRAGEKISDSRAKKAAQVCSSKGASNNETP+KDL
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPSKDL 120

Query: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 155

[Close]

BLAST of CsaV3_1G000620 vs. TrEMBL
Match: tr|A0A2P5DVL4|A0A2P5DVL4_PARAD (Ubiquitin ligase domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_029390 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.4e-40
Identity = 104/158 (65.82%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 5   SSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILIR 64
           S+ S HGASKFL +LPSRG FSSTV SSNPG MRVYI ++DT+PP+ Q+I TNQQNILIR
Sbjct: 16  SNQSAHGASKFLSNLPSRGLFSSTVLSSNPGGMRVYISVNDTSPPDGQQITTNQQNILIR 75

Query: 65  SLMLKN----SSSKDGKGVATGESSRKRAGEKISDSRA--KKA-AQVCSSKGASNNETPT 124
           SL LKN    SSSKD K     ESSRKR  E+I DSRA  KKA +Q  S +  S+ +   
Sbjct: 76  SLTLKNKKGDSSSKDVKSAGATESSRKRTAERILDSRASTKKANSQSISQQEGSSGQAAN 135

Query: 125 KDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           KD Q LTVERLRALLKAKGLSL+GKK+ELIARL+ A G
Sbjct: 136 KDFQGLTVERLRALLKAKGLSLKGKKEELIARLKGASG 173

[Close]

BLAST of CsaV3_1G000620 vs. TrEMBL
Match: tr|A0A2P5DFW2|A0A2P5DFW2_9ROSA (Ubiquitin ligase domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_252830 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 105/158 (66.46%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 5   SSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILIR 64
           S+ S HGASKFL +LPSRG FSSTV SSNPG MRVYI ++DT+PP+ QEIKTNQQNILIR
Sbjct: 16  SNQSAHGASKFLSNLPSRGLFSSTVLSSNPGGMRVYISVNDTSPPDGQEIKTNQQNILIR 75

Query: 65  SLMLKN----SSSKDGKGVATGESSRKRAGEKISDSRA--KKA-AQVCSSKGASNNETPT 124
           SL LKN    SSSKD K     ES RKR  E I DSRA  KKA +Q  S +  S+ +   
Sbjct: 76  SLTLKNKKGDSSSKDVKSAGATESFRKRTAETILDSRASTKKANSQSISRQEGSSGQAAN 135

Query: 125 KDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           KD Q LTVERLRALLKAKGLSL+GKK+ELIARL+ A G
Sbjct: 136 KDFQGLTVERLRALLKAKGLSLKGKKEELIARLKGASG 173

[Close]

BLAST of CsaV3_1G000620 vs. TrEMBL
Match: tr|A0A2I4F008|A0A2I4F008_9ROSI (uncharacterized protein LOC108994300 OS=Juglans regia OX=51240 GN=LOC108994300 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.0e-38
Identity = 100/158 (63.29%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 5   SSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILIR 64
           S ++  GASKFL DLPSRG FSSTV SSNPG MRVYIC HD++PPE Q+IKT+Q+NILIR
Sbjct: 13  SHTTSTGASKFLADLPSRGLFSSTVISSNPGGMRVYICGHDSSPPEGQQIKTSQRNILIR 72

Query: 65  SLMLK----NSSSKDGKGVATGESSRKRAGEKISDSR--AKKA-AQVCSSKGASNNETPT 124
           SLMLK    +SSSKD KGV   ESSRKR  E+  D R  AK+A +Q+ S +  SN+    
Sbjct: 73  SLMLKKQKGDSSSKDVKGVNATESSRKRVAERAPDVRNSAKRANSQISSQQEGSNSRASN 132

Query: 125 KDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSADG 156
           +D Q+ TVERLRALLKA+ LS +GKKDELIARL+ A G
Sbjct: 133 RDFQSFTVERLRALLKARSLSTKGKKDELIARLKEATG 170

The following BLAST results are available for this feature:

BLAST of CsaV3_1G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138052.1	3.6e-75	100.00	PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus] >KGN63488.1 hy...	[more]
XP_008464442.1	5.2e-74	98.71	PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo]	[more]
XP_022928285.1	1.2e-65	88.39	uncharacterized protein LOC111435158 [Cucurbita moschata] >XP_023001409.1 unchar...	[more]
XP_023529915.1	2.6e-65	87.74	uncharacterized protein LOC111792623 [Cucurbita pepo subsp. pepo]	[more]
XP_023553647.1	1.6e-62	85.81	uncharacterized protein LOC111811137 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G000620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63460.4	1.8e-33	52.41	SAP domain-containing protein	[more]

BLAST of CsaV3_1G000620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G000620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNX7\|A0A0A0LNX7_CUCSA	2.4e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002080 PE=4 SV=1	[more]
tr\|A0A1S3CLX1\|A0A1S3CLX1_CUCME	3.4e-74	98.71	uncharacterized protein LOC103502327 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=...	[more]
tr\|A0A2P5DVL4\|A0A2P5DVL4_PARAD	9.4e-40	65.82	Ubiquitin ligase domain containing protein OS=Parasponia andersonii OX=3476 GN=P...	[more]
tr\|A0A2P5DFW2\|A0A2P5DFW2_9ROSA	1.2e-39	66.46	Ubiquitin ligase domain containing protein OS=Trema orientalis OX=63057 GN=TorRG...	[more]
tr\|A0A2I4F008\|A0A2I4F008_9ROSI	3.0e-38	63.29	uncharacterized protein LOC108994300 OS=Juglans regia OX=51240 GN=LOC108994300 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018276	DDA1_N
IPR036361	SAP_dom_sf
IPR003034	SAP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G000620.1	CsaV3_1G000620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003034	SAP domain	SMART	SM00513	sap_9	coord: 120..154 e-value: 2.3E-6 score: 37.2
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 120..153 e-value: 6.1E-9 score: 35.3
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 120..154 score: 11.285
IPR036361	SAP domain superfamily	GENE3D	G3DSA:1.10.720.30		coord: 96..155 e-value: 8.0E-11 score: 43.3
IPR036361	SAP domain superfamily	SUPERFAMILY	SSF68906	SAP domain	coord: 114..151
IPR018276	DET1- and DDB1-associated protein 1, N-terminal	PFAM	PF10172	DDA1	coord: 14..69 e-value: 2.0E-14 score: 53.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..98
None	No IPR available	PANTHER	PTHR12381:SF58	SAP DOMAIN-CONTAINING PROTEIN	coord: 3..153
None	No IPR available	PANTHER	PTHR12381	RIBONUCLEOPROTEIN	coord: 3..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G000620	CSPI01G00590	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G000620	Cucsa.157380	Cucumber (Gy14) v1	cgycucB236
CsaV3_1G000620	CmaCh11G000370	Cucurbita maxima (Rimu)	cmacucB0100
CsaV3_1G000620	Cp4.1LG04g16140	Cucurbita pepo (Zucchini)	cpecucB0814
CsaV3_1G000620	CsGy1G000600	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G000620	Carg20172	Silver-seed gourd	carcucB1095
CsaV3_1G000620	MELO3C026211	Melon (DHL92) v3.5.1	cucmeB053
CsaV3_1G000620	ClCG06G017840	Watermelon (Charleston Gray)	cucwcgB088
CsaV3_1G000620	MELO3C026211.2	Melon (DHL92) v3.6.1	cucmedB050
CsaV3_1G000620	Cla97C06G127560	Watermelon (97103) v2	cucwmbB076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G000620	Cucumber (Chinese Long) v3	cuccucB003
CsaV3_1G000620	Cucumber (Chinese Long) v3	cuccucB017
CsaV3_1G000620	Silver-seed gourd	carcucB0395
CsaV3_1G000620	Silver-seed gourd	carcucB0466
CsaV3_1G000620	Silver-seed gourd	carcucB1050
CsaV3_1G000620	Cucumber (Gy14) v2	cgybcucB010
CsaV3_1G000620	Cucumber (Gy14) v2	cgybcucB101
CsaV3_1G000620	Cucumber (Gy14) v1	cgycucB593
CsaV3_1G000620	Cucurbita maxima (Rimu)	cmacucB0058
CsaV3_1G000620	Cucurbita maxima (Rimu)	cmacucB0117
CsaV3_1G000620	Cucurbita maxima (Rimu)	cmacucB0256
CsaV3_1G000620	Cucurbita maxima (Rimu)	cmacucB0273
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0044
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0243
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0091
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0094
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0261
CsaV3_1G000620	Cucurbita moschata (Rifu)	cmocucB0470
CsaV3_1G000620	Cucurbita pepo (Zucchini)	cpecucB0029
CsaV3_1G000620	Cucurbita pepo (Zucchini)	cpecucB0442
CsaV3_1G000620	Cucurbita pepo (Zucchini)	cpecucB0630
CsaV3_1G000620	Cucurbita pepo (Zucchini)	cpecucB0739
CsaV3_1G000620	Cucurbita pepo (Zucchini)	cpecucB0804
CsaV3_1G000620	Wild cucumber (PI 183967)	cpicucB014
CsaV3_1G000620	Wild cucumber (PI 183967)	cpicucB126
CsaV3_1G000620	Bottle gourd (USVL1VR-Ls)	cuclsiB039
CsaV3_1G000620	Bottle gourd (USVL1VR-Ls)	cuclsiB081
CsaV3_1G000620	Melon (DHL92) v3.5.1	cucmeB019
CsaV3_1G000620	Melon (DHL92) v3.5.1	cucmeB084
CsaV3_1G000620	Melon (DHL92) v3.6.1	cucmedB017
CsaV3_1G000620	Melon (DHL92) v3.6.1	cucmedB077
CsaV3_1G000620	Watermelon (Charleston Gray)	cucwcgB056
CsaV3_1G000620	Watermelon (Charleston Gray)	cucwcgB072
CsaV3_1G000620	Watermelon (97103) v1	cucwmB032
CsaV3_1G000620	Watermelon (97103) v1	cucwmB105
CsaV3_1G000620	Watermelon (97103) v2	cucwmbB061
CsaV3_1G000620	Watermelon (97103) v2	cucwmbB048
CsaV3_1G000620	Wax gourd	cucwgoB015
CsaV3_1G000620	Wax gourd	cucwgoB062
CsaV3_1G000620	Wax gourd	cucwgoB086