Carg20172 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20172
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SAP domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_154 : 30625 .. 34064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTTCACTCACCATCTTGCTGTCTTTCTAGTTTTTACTTTGCGAGGGTTTCTCGCCCATGGCGTCCTCCGCTTCTTCCTCGTCTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTACTTTTCGTCTTCCGTCCCTTCCTCAAATCCTGTAATGTTTCTTCTCCAATCTCACTGTTCTTTTCAATCTTACTCTTCCGTATTCGCTCTGTTTGAAATCTGTATAATTTTCCATCATTGTCACGTCTACATTAGGAAAAAAAATCACTTAGCGAAAGATTATGTGTAGTTTAATCAATCACTTGAATTCATTAGGGCCTGAAGCCATGGAAATTATAATATCACAATCAATCACTTGAATTCACTGCTCTTTGTAATAATGCATTTGAATCTGCTAGCACGTTTACGAGGGAGTTGAGTCCATCATACGTTTTTAAGTTGTAAGAGAATGCTTTAACCTTCTCTCGTGCTTTAAAGGATACTGTTGCTTTACTCTCATTTCGTAAGGTTCCAAATTATTAGTGATCAAGGACCTGTTCTTTCTAGGTATGCAAACTTATATAAATTGTGACAAAGAGGTGTAATTTGAATTTTTCTGCCTAGGTTTGTGCTAGGATGCCGTTCTTCTTTTGCATCTACTATTTATGTGTTTTGTTAGATCGGATAATATGAATGTTTGAGTAATTGAGTTGGTTATCACTATTATTTATGTGTTTTGTTAGATCGGATAATACGAATGTTTGAGTAATTGAGTTGGTTATCACTTTAGTGTGAATTAATGGATGTATGCGTGTTATTATGTTGGAAGATTTATAACCACATTGTAGTATGAAGGTATTTTTTGGATTATCAATTTTGAGATTTCAATCTACTTTCTTTCTTTTACTAGTTTTTTGCCTTGTGATGGTCATTTACAAGCATTTGTTGTGGTTATTGTTCTTATTGAAAGGATTTGTTTTTTTAAATATATTCATGCAGGGGAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCACCAGGTTATCTTTTATTTCTCTGAATGTTCATTTTATTTACCACAAAGCAACAGTTTAAATACATAAGACTGTAGGTGTACCATGGAGCAACACTTTAATCATGTAAGATTGTAGGTTATGCAGTTTGAGAACTGTTATTCACCAGATATTTGATTGACATGAAAATTGATGAAGAAAGGAGAATCTAGTACTTGTGTTGCCCTATGAACTTTGGTGCCAGAAGTTTGTTTTGAACAGTTAAGATAGCTGATTTTGGCAATTTACATGTGTTTTGAATGTATGTGGAGAAACCAACAAATAGTCATTGTTGACATTACTGTCACGCTATCAGGAATGATATCTGAGATTCATCCATCATCCTACCGAATAGTTCTTGCTGAAACATGTCAGAAACTGGACTTATCATTCACCAATGCACTGACCACTATGTTGAGGATTGTTTGGAGAGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAATTTAAGGAATACATCTCCATTGGTATGATGCCTTTTGGGGAAGCCCAAAGAAAAGCCATGAGAGCTTATGCTCAAAGTGGATAATATCATACCATTGTGGAGATCTGTGGTTCCTAACACACTGTGTGTTACTTTCTGCCATGAGAGCTTATGCTCAAAGTGGATAATATCATACCATTGTGGAGATCTGTGGTTCCTAACACACTGTGTGTTACTTTCTGCCATGTTATGTATTTTGAACACAGCAAAAGCTAATAAATATTTACACCCATTTTGTTGCATCCAGAGGACCAAGAAATAAAGACAAACCAGCAGAATATACTTATTCGATCTTTAATGCTTAAAAATTCCAGCTCAAAGGATGGAAAGGGAGTCGCTGCAGCCGAATCCTCTCGAAAGAGGTACCATCATGTCATTATCTTTCTTAGAAATAAAAGGCTGGTCTTTTAAGGTGGCTAGTTAGCCAAGTTTTGTTGAAACTATTGGATTTTGCTGCATTTTCTTAAGTGGCACTTGAAGCTAACAATGGATTGTCGTTTGTTATCACATTGCTCATAAAATATATCATTTTCATTTCTTAACACATGGTGCACGTACCATATAGCATATAACTTTGGTTTTAGCATCTACATAATATTGAGTCTTAATTATGCTATCCTTATCTTTCCAGGGCTGGTGAAAAAATTTCAGATGGCAGAGCAAAGAGGACTGCCCAAGTAAGTTCAGGAAAAGGTAAGTTCTTGTTGATCATGTATACAGAAAGTAAGTAGAGCATGTTGACTGACTCGTTACTCATTGCAAATGTTCTTCAAAAGAGTTAACTAAATCCTGCCTTCGTTTCTCCTTGAGCATTGTGCAGACAGACATTAATGTAGTCTTAATCATAATTCATGAAAGTTCAATCAGCATCACCATTTCTTGTTAGCATCAATCTCTTGTGGTGCTCTTGTTTGTTCTTTTTGTTTTTTAAAATTATTTTCTTGTATAATCCAATTATTTTTCTTAGTATTTTATAGAGGAAAATTATGTGACCAATGTGCTGACCCCTCAAGAGTGAAGGAACAAAAAAGTATCTCCTAGCGGGGTGGTGCCCTTTCTCTTTAATATGAAGAACAAGTGAACGACCACTATCTATTATATGCAAAAAACAATAAATCTATGCATATTATACATTGTGGTTGTTCTACATTTTAAAAGGCCCCAACCCTTAAAGAACCCTGCATTTCATACTTTGGTGTTTAACGTCTAGAAACATGTCGAGCAGTTCAATTAGTTATTAGGAAATATCTGAAAATTGAAACAGAAAGGACCAGTCAGGGGAGGATGCGTTTTACCTTTTTACCTTTTTACCTTTTTTCTTTCAATAATCAGTTTATAGTTTCATTAGAATTGTGTTCCATATCTGATGATTATGGTGGCTATAATAATGCATCCAGGAGCATCAAATAGTGAAACACCGAGTAAGGATTTCCAGAATTTGACTGTAGAGAGGCTGCGTGCGCTTCTCAAGGCCAGAGGCCTTTCGCTGAAAGGAAAGAAGGCAAGTATATTATATTGCAATCAATGTGAAGTAGAGTAGCTGAATAAGTCTTTATTGATCGTTGTGTGTTTGAGGATTGAGATGAATGCCACTGCTTTCTCTGTGGGTTATCCTTTTCATATTTTTGGATTGACTTGGTGCAGGATGAATTAATTGCCCGCCTTAGAAGCGCTGATGGTTAGACGACCACTATGGGAGTGAAACGAATGCTCCTTTACATGAACAACATGAGCAGCAAGGAAGGCAACCCGAGAGAGAAAGTTAAGGATGACTGTTTCCTCAACATTTAAATAGGAGTAGGGTAGAGTTGAAGTTGAACTGATGATGGTTCTTGAGAAATCAGTCATGAATATCTGCATTCATTCATTTTGATTCAGG

mRNA sequence

AGATTTCACTCACCATCTTGCTGTCTTTCTAGTTTTTACTTTGCGAGGGTTTCTCGCCCATGGCGTCCTCCGCTTCTTCCTCGTCTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTACTTTTCGTCTTCCGTCCCTTCCTCAAATCCTGGGAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCACCAGAGGACCAAGAAATAAAGACAAACCAGCAGAATATACTTATTCGATCTTTAATGCTTAAAAATTCCAGCTCAAAGGATGGAAAGGGAGTCGCTGCAGCCGAATCCTCTCGAAAGAGGGCTGGTGAAAAAATTTCAGATGGCAGAGCAAAGAGGACTGCCCAAGTAAGTTCAGGAAAAGGAGCATCAAATAGTGAAACACCGAGTAAGGATTTCCAGAATTTGACTGTAGAGAGGCTGCGTGCGCTTCTCAAGGCCAGAGGCCTTTCGCTGAAAGGAAAGAAGGCAAGTATATTATATTGCAATCAATGTGAAGATGAATTAATTGCCCGCCTTAGAAGCGCTGATGGTTAGACGACCACTATGGGAGTGAAACGAATGCTCCTTTACATGAACAACATGAGCAGCAAGGAAGGCAACCCGAGAGAGAAAGTTAAGGATGACTGTTTCCTCAACATTTAAATAGGAGTAGGGTAGAGTTGAAGTTGAACTGATGATGGTTCTTGAGAAATCAGTCATGAATATCTGCATTCATTCATTTTGATTCAGG

Coding sequence (CDS)

ATGGCGTCCTCCGCTTCTTCCTCGTCTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTACTTTTCGTCTTCCGTCCCTTCCTCAAATCCTGGGAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCACCAGAGGACCAAGAAATAAAGACAAACCAGCAGAATATACTTATTCGATCTTTAATGCTTAAAAATTCCAGCTCAAAGGATGGAAAGGGAGTCGCTGCAGCCGAATCCTCTCGAAAGAGGGCTGGTGAAAAAATTTCAGATGGCAGAGCAAAGAGGACTGCCCAAGTAAGTTCAGGAAAAGGAGCATCAAATAGTGAAACACCGAGTAAGGATTTCCAGAATTTGACTGTAGAGAGGCTGCGTGCGCTTCTCAAGGCCAGAGGCCTTTCGCTGAAAGGAAAGAAGGCAAGTATATTATATTGCAATCAATGTGAAGATGAATTAATTGCCCGCCTTAGAAGCGCTGATGGTTAG

Protein sequence

MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDFQNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG

Homology

[Close]

BLAST of Carg20172 vs. NCBI nr
Match: XP_022928285.1 (uncharacterized protein LOC111435158 [Cucurbita moschata] >XP_023001409.1 uncharacterized protein LOC111495549 [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 3.3e-71
Identity = 155/165 (93.94%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN
Sbjct: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKARGLSLKGKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKARGLSLKGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. NCBI nr
Match: XP_023529915.1 (uncharacterized protein LOC111792623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.2 bits (705), Expect = 7.4e-71
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MAS+ASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN
Sbjct: 1   MASTASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKARGLSLKGKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKARGLSLKGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. NCBI nr
Match: XP_008464442.1 (PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 139/165 (84.24%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MA S+SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVA AESSRKRAGEKISD RAK+ AQV S KGASN+ETPSKD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPSKDL 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKA+GLSL+GKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. NCBI nr
Match: XP_004138052.1 (PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus] >KGN63488.1 hypothetical protein Csa_1G002080 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 9.7e-63
Identity = 137/165 (83.03%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MA S+SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVA  ESSRKRAGEKISD RAK+ AQV S KGASN+ETP+KD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKA+GLSL+GKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. NCBI nr
Match: XP_023553647.1 (uncharacterized protein LOC111811137 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 138/165 (83.64%), Postives = 145/165 (87.88%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MASSASSS+ GASKFLGDLPS GYFSS+VPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN
Sbjct: 1   MASSASSSAPGASKFLGDLPSHGYFSSTVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISD RAKR  QV S KGAS+S TPSKD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDSRAKRAVQVRSTKGASSSATPSKDL 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           Q+LTVERLRALLKA+GLSLKG+K          D+LIARLRS DG
Sbjct: 121 QSLTVERLRALLKAKGLSLKGRK----------DDLIARLRSVDG 155

[Close]

BLAST of Carg20172 vs. TAIR10
Match: AT5G63460.4 (SAP domain-containing protein)

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-31
Identity = 87/176 (49.43%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 5   ASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPP------------EDQ 64
           + SS   ASKFL DLPSRG+ SS+V SSNPGS+RVYIC HDTSPP            + Q
Sbjct: 9   SDSSDQTASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPVIGSLRIISFRIKGQ 68

Query: 65  EIKTNQQNILIRSLMLK----NSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGK 124
            IKTNQQNILIRSL+LK     SSSKD KG A     ++ A   + D  +          
Sbjct: 69  LIKTNQQNILIRSLLLKKQKGESSSKDSKGTAEDGPKKRAANRALDDRSSAXXXXXXXXX 128

Query: 125 GASNSETPSKDFQNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSAD 165
              +S T  +DFQ+LTVE+LRA+LK +GL  KG+K          DELIARL+SA+
Sbjct: 129 XXXSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRK----------DELIARLKSAN 174

[Close]

BLAST of Carg20172 vs. TrEMBL
Match: tr|A0A1S3CLX1|A0A1S3CLX1_CUCME (uncharacterized protein LOC103502327 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 9.9e-64
Identity = 139/165 (84.24%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MA S+SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVA AESSRKRAGEKISD RAK+ AQV S KGASN+ETPSKD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPSKDL 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKA+GLSL+GKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. TrEMBL
Match: tr|A0A0A0LNX7|A0A0A0LNX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002080 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 6.4e-63
Identity = 137/165 (83.03%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQN 60
           MA S+SSS HGASKFLGDLPSRG+FSS+VPSSNPGSMRVYICLHDT+PPEDQEIKTNQQN
Sbjct: 1   MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQN 60

Query: 61  ILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDF 120
           ILIRSLMLKNSSSKDGKGVA  ESSRKRAGEKISD RAK+ AQV S KGASN+ETP+KD 
Sbjct: 61  ILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDL 120

Query: 121 QNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           QNLTVERLRALLKA+GLSL+GKK          DELIARLRSADG
Sbjct: 121 QNLTVERLRALLKAKGLSLRGKK----------DELIARLRSADG 155

[Close]

BLAST of Carg20172 vs. TrEMBL
Match: tr|A0A2I4F008|A0A2I4F008_9ROSI (uncharacterized protein LOC108994300 OS=Juglans regia OX=51240 GN=LOC108994300 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 106/166 (63.86%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 7   SSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSL 66
           ++S GASKFL DLPSRG FSS+V SSNPG MRVYIC HD+SPPE Q+IKT+Q+NILIRSL
Sbjct: 15  TTSTGASKFLADLPSRGLFSSTVISSNPGGMRVYICGHDSSPPEGQQIKTSQRNILIRSL 74

Query: 67  MLK----NSSSKDGKGVAAAESSRKRAGEKISDGR--AKR-TAQVSSGKGASNSETPSKD 126
           MLK    +SSSKD KGV A ESSRKR  E+  D R  AKR  +Q+SS +  SNS   ++D
Sbjct: 75  MLKKQKGDSSSKDVKGVNATESSRKRVAERAPDVRNSAKRANSQISSQQEGSNSRASNRD 134

Query: 127 FQNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           FQ+ TVERLRALLKAR LS KGKK          DELIARL+ A G
Sbjct: 135 FQSFTVERLRALLKARSLSTKGKK----------DELIARLKEATG 170

[Close]

BLAST of Carg20172 vs. TrEMBL
Match: tr|A0A2R6QGE7|A0A2R6QGE7_ACTCH (Nucleolin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18030 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-38
Identity = 101/163 (61.96%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 11  GASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSLMLK- 70
           GASK+L  LPSRG FSS+V +SNPG MRVYIC HDTSPP++Q IKTNQ+NILIRSLMLK 
Sbjct: 17  GASKYLAGLPSRGLFSSTVIASNPGGMRVYICDHDTSPPDEQLIKTNQKNILIRSLMLKK 76

Query: 71  ---NSSSKDGKGVAAAESSRKRAGEKISDGRAK----RTAQVSSGKGASNSETPSKDFQN 130
              +SSSKD KG + +E+SRKR  E+  DGRA      T+Q SS +  S S  P KDFQ+
Sbjct: 77  QKGDSSSKDVKGTSPSEASRKRPAERALDGRASAKRATTSQXSSRQEGSKSRVPEKDFQS 136

Query: 131 LTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
           LTVERLRALLK +GLS+KGKK          DELIARLR  +G
Sbjct: 137 LTVERLRALLKEKGLSMKGKK----------DELIARLRGGNG 169

[Close]

BLAST of Carg20172 vs. TrEMBL
Match: tr|A0A2P5DFW2|A0A2P5DFW2_9ROSA (Ubiquitin ligase domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_252830 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 104/170 (61.18%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 3   SSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNIL 62
           S ++ S+HGASKFL +LPSRG FSS+V SSNPG MRVYI ++DTSPP+ QEIKTNQQNIL
Sbjct: 14  SDSNQSAHGASKFLSNLPSRGLFSSTVLSSNPGGMRVYISVNDTSPPDGQEIKTNQQNIL 73

Query: 63  IRSLMLKN----SSSKDGKGVAAAESSRKRAGEKISDGRA---KRTAQVSSGKGASNSET 122
           IRSL LKN    SSSKD K   A ES RKR  E I D RA   K  +Q  S +  S+ + 
Sbjct: 74  IRSLTLKNKKGDSSSKDVKSAGATESFRKRTAETILDSRASTKKANSQSISRQEGSSGQA 133

Query: 123 PSKDFQNLTVERLRALLKARGLSLKGKKASILYCNQCEDELIARLRSADG 166
            +KDFQ LTVERLRALLKA+GLSLKGKK          +ELIARL+ A G
Sbjct: 134 ANKDFQGLTVERLRALLKAKGLSLKGKK----------EELIARLKGASG 173

The following BLAST results are available for this feature:

BLAST of Carg20172 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928285.1	3.3e-71	93.94	uncharacterized protein LOC111435158 [Cucurbita moschata] >XP_023001409.1 unchar...	[more]
XP_023529915.1	7.4e-71	93.33	uncharacterized protein LOC111792623 [Cucurbita pepo subsp. pepo]	[more]
XP_008464442.1	1.5e-63	84.24	PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo]	[more]
XP_004138052.1	9.7e-63	83.03	PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus] >KGN63488.1 hy...	[more]
XP_023553647.1	1.8e-61	83.64	uncharacterized protein LOC111811137 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20172 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63460.4	7.0e-31	49.43	SAP domain-containing protein	[more]

BLAST of Carg20172 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20172 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLX1\|A0A1S3CLX1_CUCME	9.9e-64	84.24	uncharacterized protein LOC103502327 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=...	[more]
tr\|A0A0A0LNX7\|A0A0A0LNX7_CUCSA	6.4e-63	83.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002080 PE=4 SV=1	[more]
tr\|A0A2I4F008\|A0A2I4F008_9ROSI	3.2e-38	63.86	uncharacterized protein LOC108994300 OS=Juglans regia OX=51240 GN=LOC108994300 P...	[more]
tr\|A0A2R6QGE7\|A0A2R6QGE7_ACTCH	4.2e-38	61.96	Nucleolin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc1803...	[more]
tr\|A0A2P5DFW2\|A0A2P5DFW2_9ROSA	1.6e-37	61.18	Ubiquitin ligase domain containing protein OS=Trema orientalis OX=63057 GN=TorRG...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036361	SAP_dom_sf
IPR018276	DDA1_N
IPR003034	SAP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20172-RA	Carg20172-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 120..145 e-value: 7.6E-7 score: 28.7
IPR018276	DET1- and DDB1-associated protein 1, N-terminal	PFAM	PF10172	DDA1	coord: 14..69 e-value: 1.8E-14 score: 53.6
IPR036361	SAP domain superfamily	GENE3D	G3DSA:1.10.720.30		coord: 117..147 e-value: 1.4E-6 score: 29.8
IPR036361	SAP domain superfamily	SUPERFAMILY	SSF68906	SAP domain	coord: 117..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..98
None	No IPR available	PANTHER	PTHR12381	RIBONUCLEOPROTEIN	coord: 4..163
None	No IPR available	PANTHER	PTHR12381:SF58	SAP DOMAIN-CONTAINING PROTEIN	coord: 4..163

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20172	Csa1G002080	Cucumber (Chinese Long) v2	carcuB1062
Carg20172	MELO3C026211	Melon (DHL92) v3.5.1	carmeB1015
Carg20172	ClCG06G017840	Watermelon (Charleston Gray)	carwcgB1019
Carg20172	CSPI01G00590	Wild cucumber (PI 183967)	carcpiB1083
Carg20172	Cucsa.157380	Cucumber (Gy14) v1	carcgyB1161
Carg20172	CmaCh11G000370	Cucurbita maxima (Rimu)	carcmaB1449
Carg20172	Cp4.1LG04g16140	Cucurbita pepo (Zucchini)	carcpeB1458
Carg20172	CsGy1G000600	Cucumber (Gy14) v2	carcgybB1031
Carg20172	MELO3C026211.2	Melon (DHL92) v3.6.1	carmedB1027
Carg20172	CsaV3_1G000620	Cucumber (Chinese Long) v3	carcucB1095
Carg20172	Cla97C06G127560	Watermelon (97103) v2	carwmbB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20172	Cucurbita moschata (Rifu)	carcmoB1402
Carg20172	Cucurbita moschata (Rifu)	carcmoB1403
Carg20172	Cucurbita pepo (Zucchini)	carcpeB1456
Carg20172	Bottle gourd (USVL1VR-Ls)	carlsiB955
Carg20172	Watermelon (97103) v1	carwmB1047
Carg20172	Wax gourd	carwgoB1226
Carg20172	Silver-seed gourd	carcarB396
Carg20172	Silver-seed gourd	carcarB484
Carg20172	Cucurbita maxima (Rimu)	carcmaB1448