Csa7G394060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G394060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 15003118 .. 15003554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCTCTATCCCGCAAAAACCTCTAAAAATGGCTGCCATCAAATCCCTAATTTCCATATCTCTTCTCGCCCTTCTTTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCAATTGCCGCGGCGCTTCCAATTCTGTTACCGCAATGCTCCGCCGTAACATCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCGTATCAAAAAAGGTGGACTGGGGCGGTTTCGACCTATAGGGGCTGGCACTGGAACTGGGACCCGTAGTTCAGCAGCGAATCGGAGCCGAGTCGATTCTTTTGGCCTCGGATTTCTCCTCTTCTTCTTCGGGTTGGTCTTGTAAAATCTGATTGATTTTGTTCGTTTCTGTAAAGAATAACTGAGATTTATTTGGGATTTTATTAATTCATTTCGTTCCTTCTT

mRNA sequence

ATGGCTGCCATCAAATCCCTAATTTCCATATCTCTTCTCGCCCTTCTTTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCAATTGCCGCGGCGCTTCCAATTCTGTTACCGCAATGCTCCGCCGTAACATCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCGTATCAAAAAAGGTGGACTGGGGCGGTTTCGACCTATAGGGGCTGGCACTGGAACTGGGACCCGTAGTTCAGCAGCGAATCGGAGCCGAGTCGATTCTTTTGGCCTCGGATTTCTCCTCTTCTTCTTCGGGTTGGTCTTGTAA

Coding sequence (CDS)

ATGGCTGCCATCAAATCCCTAATTTCCATATCTCTTCTCGCCCTTCTTTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCAATTGCCGCGGCGCTTCCAATTCTGTTACCGCAATGCTCCGCCGTAACATCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCGTATCAAAAAAGGTGGACTGGGGCGGTTTCGACCTATAGGGGCTGGCACTGGAACTGGGACCCGTAGTTCAGCAGCGAATCGGAGCCGAGTCGATTCTTTTGGCCTCGGATTTCTCCTCTTCTTCTTCGGGTTGGTCTTGTAA

Protein sequence

MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL*
Homology
[Close]
BLAST of Csa7G394060 vs. TrEMBL
Match: A0A0A0KAQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60
           MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 109
           VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL
Sbjct: 61  VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Csa7G394060 vs. NCBI nr
Match: gi|700189653|gb|KGN44886.1| (hypothetical protein Csa_7G394060 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60
           MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 109
           VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL
Sbjct: 61  VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Csa7G394060 vs. NCBI nr
Match: gi|659101552|ref|XP_008451666.1| (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-13
Identity = 68/143 (47.55%), Postives = 75/143 (52.45%), Query Frame = 1 

Query: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGA-SNSVTAMLRRNILQTATHEIA------ 60
           MAAIK+ I ISLLALLFF E L       RGA SNSVT +L R ILQTA H+ A      
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  DSEGKMN-VRIK----------------------KGGLGRFRP-----IGAGTGTGTRSS 109
            SE KMN V +K                       GG GR R      +G G GTG   S
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGG-GTGHHKS 120

[Close]
BLAST of Csa7G394060 vs. NCBI nr
Match: gi|659101524|ref|XP_008451651.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 45/101 (44.55%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 1  MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60
          MAAI+ L+SI+LLALLFFSESL T        S+S+T +  RNIL T  H I +   + +
Sbjct: 1  MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61 VRIKKGGL-----GRFRPIGAGTGTGT-RSSAANRSRVDSF 96
           + K   L      R RPI      G    SA NRSRV SF
Sbjct: 61 YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASF 93

The following BLAST results are available for this feature:
BLAST of Csa7G394060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAQ7_CUCSA1.3e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1[more]
BLAST of Csa7G394060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189653|gb|KGN44886.1|1.9e-50100.00hypothetical protein Csa_7G394060 [Cucumis sativus][more]
gi|659101552|ref|XP_008451666.1|9.1e-1347.55PREDICTED: protein no-on-transient A-like [Cucumis melo][more]
gi|659101524|ref|XP_008451651.1|1.3e-0644.55PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cuc... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085616cucumber EST collection version 3.0transcribed_cluster
CU114496cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G394060.1Csa7G394060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU085616CU085616transcribed_cluster
CU114496CU114496transcribed_cluster