MELO3C016060.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016060.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	chr01 : 32933408 .. 32934053 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCTTATATTCTCATCTCTATCTAACAAAAACCCCTAAAAATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTAGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAAATCAGCGGCGAGTCGGAGCCAAGTCGCTTCTTTTGGCCTTGGATTTCTCCTCTTCTTCTCACGATTGTTCTTGTAAATTCTGATTGATTTTATTGGTTTCTATAAAAAACTGAGATTTGTTTCGGATTTTATTAATTCATTCCGTTCTTTTTTGTTTGATGATAAAAGAATGATATGTTTGTGTCACTGTGTTATGTGTTTATGTCACATCTAGCCAAATGAGCTAAAGGCGACGAGATTGCATTTCCGACTATTGTACTCGATTGTATCGTATACTTATGTCAGGTTATATTGTTTAGTTGTTATTATATAAATGATACATTTAATTTTAAATTTGATTGTTTATTT

mRNA sequence

ACTTCCTTATATTCTCATCTCTATCTAACAAAAACCCCTAAAAATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTAGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAAATCAGCGGCGAGTCGGAGCCAAGTCGCTTCTTTTGGCCTTGGATTTCTCCTCTTCTTCTCACGATTGTTCTTGTAAATTCTGATTGATTTTATTGGTTTCTATAAAAAACTGAGATTTGTTTCGGATTTTATTAATTCATTCCGTTCTTTTTTGTTTGATGATAAAAGAATGATATGTTTGTGTCACTGTGTTATGTGTTTATGTCACATCTAGCCAAATGAGCTAAAGGCGACGAGATTGCATTTCCGACTATTGTACTCGATTGTATCGTATACTTATGTCAGGTTATATTGTTTAGTTGTTATTATATAAATGATACATTTAATTTTAAATTTGATTGTTTATTT

Coding sequence (CDS)

ATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTAGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAA

Protein sequence

MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMNVHIKRGRGGADSTCSGWHWINWQP

Homology

[Close]

BLAST of MELO3C016060.2 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_7G394060 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-21
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
          MAAIKSL+ ISLLALLFFSESLSTSAA+CRGASNSVT MLRRN+LQTATHEIADSEGKMN
Sbjct: 1  MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61 VHIKRG 67
          V IK+G
Sbjct: 61 VRIKKG 66

[Close]

BLAST of MELO3C016060.2 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MAAIKSLLFISLLALLFFSESLSTSAADCRGA-SNSVTGMLRRNVLQTATHEIA------ 60
          MAAIK+ +FISLLALLFF E L       RGA SNSVTG+L R +LQTA H+ A      
Sbjct: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61 DSEGKM-NVHIKRG 67
           SE KM NVH+K G
Sbjct: 61 SSERKMNNVHMKIG 74

[Close]

BLAST of MELO3C016060.2 vs. TrEMBL
Match: tr|A0A0A0KAQ7|A0A0A0KAQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
          MAAIKSL+ ISLLALLFFSESLSTSAA+CRGASNSVT MLRRN+LQTATHEIADSEGKMN
Sbjct: 1  MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61 VHIKRG 67
          V IK+G
Sbjct: 61 VRIKKG 66

[Close]

BLAST of MELO3C016060.2 vs. TrEMBL
Match: tr|A0A1S3BRF6|A0A1S3BRF6_CUCME (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1  MAAIKSLLFISLLALLFFSESLSTSAADCRGA-SNSVTGMLRRNVLQTATHEIA------ 60
          MAAIK+ +FISLLALLFF E L       RGA SNSVTG+L R +LQTA H+ A      
Sbjct: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61 DSEGKM-NVHIKRG 67
           SE KM NVH+K G
Sbjct: 61 SSERKMNNVHMKIG 74

The following BLAST results are available for this feature:

BLAST of MELO3C016060.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44886.1	3.6e-21	89.39	hypothetical protein Csa_7G394060 [Cucumis sativus]	[more]
XP_008451666.1	4.2e-06	58.11	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]

BLAST of MELO3C016060.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016060.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016060.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAQ7\|A0A0A0KAQ7_CUCSA	2.4e-21	89.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]
tr\|A0A1S3BRF6\|A0A1S3BRF6_CUCME	2.8e-06	58.11	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016060.2.1	MELO3C016060.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016060.2	Csa7G394060	Cucumber (Chinese Long) v2	cumedB511
MELO3C016060.2	CSPI07G17020	Wild cucumber (PI 183967)	cpimedB525
MELO3C016060.2	Cucsa.025220	Cucumber (Gy14) v1	cgymedB601
MELO3C016060.2	Lsi02G023590	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C016060.2	CsGy7G015460	Cucumber (Gy14) v2	cgybmedB467
MELO3C016060.2	Carg22161	Silver-seed gourd	carmedB0859
MELO3C016060.2	CsaV3_7G028780	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016060.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C016060.2	Watermelon (97103) v1	medwmB181
MELO3C016060.2	Watermelon (97103) v2	medwmbB194