Csa7G394020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G394020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 14994667 .. 14995077 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCACATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGAATATTGTGTAAACTTCCGACTCTTATTTGTTTCTTTTTCTGTGGTGTGTATTTAGCGTGATTCAAA

mRNA sequence

ATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCACATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGA

Coding sequence (CDS)

ATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCACATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGA

Protein sequence

MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL*
Homology
[Close]
BLAST of Csa7G394020 vs. TrEMBL
Match: A0A0A0K929_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.9e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 115
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 114

[Close]
BLAST of Csa7G394020 vs. NCBI nr
Match: gi|700189649|gb|KGN44882.1| (hypothetical protein Csa_7G394020 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 115
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 114

[Close]
BLAST of Csa7G394020 vs. NCBI nr
Match: gi|778730398|ref|XP_011659775.1| (PREDICTED: uncharacterized protein LOC105436272 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE 100
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE 99

[Close]
BLAST of Csa7G394020 vs. NCBI nr
Match: gi|659101524|ref|XP_008451651.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 4.7e-28
Identity = 79/115 (68.70%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPL+SIA LAL FFSESLLTSHSLTGIPHR IL+T AHRIV+GSVE SSYQ RKSN
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVE-SSYQ-RKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE---------VGSMLCI 107
           KLH KD  +RR  PIL+S SNG HHKSA NR S VAS E         +G ++C+
Sbjct: 61  KLHTKD--RRRIRPILISGSNGMHHKSAENR-SRVASFEDRHELVRRDIGQVVCL 110

[Close]
BLAST of Csa7G394020 vs. NCBI nr
Match: gi|659101552|ref|XP_008451666.1| (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 6.0e-07
Identity = 56/148 (37.84%), Postives = 69/148 (46.62%), Query Frame = 1 

Query: 1   MAAIRPLLSIAFLALFFFSESLLT---------SHSLTGIPHRTILNTAAHRIVDGSVEY 60
           MAAI+  + I+ LAL FF E L           S+S+TG+ HR IL TAAH+    +VE 
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSYQIRKSNKLHIK-------------------------DIRKRRSGPILVSSSNGNHHK 115
           SS   RK N +H+K                           R R S    +      HHK
Sbjct: 61  SSE--RKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHK 120

The following BLAST results are available for this feature:
BLAST of Csa7G394020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K929_CUCSA4.9e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1[more]
BLAST of Csa7G394020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189649|gb|KGN44882.1|7.0e-56100.00hypothetical protein Csa_7G394020 [Cucumis sativus][more]
gi|778730398|ref|XP_011659775.1|1.0e-46100.00PREDICTED: uncharacterized protein LOC105436272 [Cucumis sativus][more]
gi|659101524|ref|XP_008451651.1|4.7e-2868.70PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cuc... [more]
gi|659101552|ref|XP_008451666.1|6.0e-0737.84PREDICTED: protein no-on-transient A-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085616cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G394020.1Csa7G394020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU085616CU085616transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G394020MELO3C015903Melon (DHL92) v3.5.1cumeB522
Csa7G394020ClCG09G006390Watermelon (Charleston Gray)cuwcgB526
Csa7G394020BhiUN245G9Wax gourdcuwgoB653
Csa7G394020CSPI07G16990Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G394020Watermelon (97103) v1cuwmB568
Csa7G394020Watermelon (97103) v1cuwmB588
Csa7G394020Cucurbita pepo (Zucchini)cpecuB161
Csa7G394020Cucurbita pepo (Zucchini)cpecuB343
Csa7G394020Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G394020Cucumber (Gy14) v2cgybcuB323
Csa7G394020Silver-seed gourdcarcuB0119
Csa7G394020Silver-seed gourdcarcuB0876
Csa7G394020Watermelon (97103) v2cuwmbB539
Csa7G394020Watermelon (97103) v2cuwmbB572
Csa7G394020Wax gourdcuwgoB657
Csa7G394020Cucumber (Gy14) v1cgycuB519
Csa7G394020Cucurbita maxima (Rimu)cmacuB388
Csa7G394020Cucurbita maxima (Rimu)cmacuB914
Csa7G394020Cucurbita moschata (Rifu)cmocuB378
Csa7G394020Cucurbita moschata (Rifu)cmocuB900