CSPI07G16990 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G16990
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 15515718 .. 15516235 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTGGTGGATGAATGAAGAGCTTAAAATTAAAATAATAGTTAAGAAAAGACAGAAACTAACTCAATTTTCCAAATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCATATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGAATATTGTGTAAACTTCCGACTCTTATTTGTTTCTTTTTCTGTGGTGTGTATTTAGCGTGATTAAAAGGGAAAAAGAAAATCAATAAAATGTATCCACT

mRNA sequence

ATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCATATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGA

Coding sequence (CDS)

ATGGCTGCCATTAGACCTCTACTTTCCATAGCTTTCTTGGCTCTTTTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTTACCGGAATTCCTCACCGGACCATCTTGAACACGGCTGCGCATCGGATTGTGGATGGCAGTGTTGAGTACTCCTCCTACCAAATTAGGAAGTCGAATAAGCTTCATATCAAAGATATAAGAAAGCGGCGGAGTGGACCAATACTAGTCAGCAGCAGCAACGGCAACCATCATAAATCGGCAGCGAATCGGCCAAGCCCAGTAGCGTCCCTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGA

Homology

[Close]

BLAST of CSPI07G16990 vs. TrEMBL
Match: A0A0A0K929_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 115
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 114

[Close]

BLAST of CSPI07G16990 vs. NCBI nr
Match: gi|700189649|gb|KGN44882.1| (hypothetical protein Csa_7G394020 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.0e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 115
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 114

[Close]

BLAST of CSPI07G16990 vs. NCBI nr
Match: gi|778730398|ref|XP_011659775.1| (PREDICTED: uncharacterized protein LOC105436272 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE 100
           KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE 99

[Close]

BLAST of CSPI07G16990 vs. NCBI nr
Match: gi|659101524|ref|XP_008451651.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 79/115 (68.70%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60
           MAAIRPL+SIA LAL FFSESLLTSHSLTGIPHR IL+T AHRIV+GSVE SSYQ RKSN
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVE-SSYQ-RKSN 60

Query: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLE---------VGSMLCI 107
           KLH KD  +RR  PIL+S SNG HHKSA NR S VAS E         +G ++C+
Sbjct: 61  KLHTKD--RRRIRPILISGSNGMHHKSAENR-SRVASFEDRHELVRRDIGQVVCL 110

The following BLAST results are available for this feature:

BLAST of CSPI07G16990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G16990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K929_CUCSA	3.5e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1	[more]

BLAST of CSPI07G16990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G16990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189649\|gb\|KGN44882.1\|	5.0e-54	100.00	hypothetical protein Csa_7G394020 [Cucumis sativus]	[more]
gi\|778730398\|ref\|XP_011659775.1\|	2.5e-45	100.00	PREDICTED: uncharacterized protein LOC105436272 [Cucumis sativus]	[more]
gi\|659101524\|ref\|XP_008451651.1\|	1.5e-26	68.70	PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cuc...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G16990.1	CSPI07G16990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G16990	Csa7G394020	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G16990	MELO3C015903	Melon (DHL92) v3.5.1	cpimeB526
CSPI07G16990	ClCG09G006390	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G16990	BhiUN245G9	Wax gourd	cpiwgoB662

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G16990	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G16990	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G16990	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G16990	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G16990	Silver-seed gourd	carcpiB0124
CSPI07G16990	Silver-seed gourd	carcpiB0896
CSPI07G16990	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G16990	Watermelon (97103) v2	cpiwmbB564
CSPI07G16990	Watermelon (97103) v2	cpiwmbB598
CSPI07G16990	Wax gourd	cpiwgoB666
CSPI07G16990	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G16990	Cucumber (Gy14) v1	cgycpiB548
CSPI07G16990	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G16990	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G16990	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G16990	Watermelon (97103) v1	cpiwmB587