Csa7G351900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G351900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	S-RNase; contains IPR001568 (Ribonuclease T2-like)
Location	Chr7 : 12563544 .. 12564077 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTACCCTTGGTTGGGTTATCTAGATCATCTCATTACAAGACCGGATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGAGATATATGTAATGAGAGTTTACAAAAACCTTATGAGTTAAGGTAATATATGTAATTAATCTCTAGCTAATGAATAAACTG

mRNA sequence

ATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGA

Coding sequence (CDS)

ATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGA

Protein sequence

MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALGD*

Homology

[Close]

BLAST of Csa7G351900 vs. TrEMBL
Match: A0A0A0K4L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.7e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 121 SSCPDNFVWLALGD 134

[Close]

BLAST of Csa7G351900 vs. TrEMBL
Match: A0A0A0LAN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           +N  W DL+ GN+ + W  +W+ HG CS   F  F+YF + L+   +  + + L   GL 
Sbjct: 87  LNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILKAAGLN 146

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVD-QYRRIQLQKAVLCYVKDGHTLIDCPDNV 120
           P +S+ +A  + +  I  +T K  G+ C  + +  + QL + VLC  KDG TLIDCP  V
Sbjct: 147 PQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLIDCPTFV 206

Query: 121 SSSCPDNFVW 130
           S++C  +FVW
Sbjct: 207 SNTCAKSFVW 216

[Close]

BLAST of Csa7G351900 vs. TrEMBL
Match: A0A0A0LAB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGL-----DTYGRHAIFSFLD 60
           +N+YW D+ +G +   W  +W  H  C    F  F YF + L      TY    + + L+
Sbjct: 87  LNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYD---LLTILN 146

Query: 61  REGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLID 120
             GL+  + K +   + +  I N+T  + G+ C ++   +++QL++ VLC+  DG TLID
Sbjct: 147 DAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTLID 206

Query: 121 CPDNVSSSCPD--NFVWL 131
           CP  VS++C     FVWL
Sbjct: 207 CPSFVSNTCTSQPKFVWL 221

[Close]

BLAST of Csa7G351900 vs. TrEMBL
Match: A0A0D9X1T5_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1


Query: 11  GNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRH-AIFSFLDREGLAPSSSKYVAK 70
           G SIE WA +W+ HGTCS  G  Q  YF   LD   R   +   L   G+ PS  +    
Sbjct: 134 GPSIEFWAYEWKKHGTCS--GLGQHGYFAAALDLKRRDGGLAGILAAAGIVPSEDERYLL 193

Query: 71  ASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPD 126
           +    AIAN+T     + C  D +   QL +   C  +DG TLIDCP  +S  C D
Sbjct: 194 SGIRGAIANATGAIPNLECNRDAFGETQLYQVYQCVARDGKTLIDCPLPMSGRCSD 247

[Close]

BLAST of Csa7G351900 vs. TrEMBL
Match: A0A0A0LDS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLD--TYGRHAIFSFLDREG 60
           +++YW D+  G  ++ W  +WE HGTCS   F+ F+YF L L+   Y ++ + + L+  G
Sbjct: 85  LSKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAILNNAG 144

Query: 61  LAPSSSKYVAKASFITAIANSTLKKGGVIC--AVDQYRRIQLQKAVLCYVKDGHTLIDCP 120
           L PS+SK          I  +   K  + C     Q +  QL + +LC+   G   IDCP
Sbjct: 145 LHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNGQGQNNQLWEVILCFDHGGVNPIDCP 204

Query: 121 DN--VSSSCPDNFVWLALGD 135
                   C  +F W +L +
Sbjct: 205 AQPVPHKMCVGDFKWQSLAN 224

[Close]

BLAST of Csa7G351900 vs. NCBI nr
Match: gi|700189392|gb|KGN44625.1| (hypothetical protein Csa_7G351900 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 6.7e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 121 SSCPDNFVWLALGD 134

[Close]

BLAST of Csa7G351900 vs. NCBI nr
Match: gi|778727014|ref|XP_004149779.2| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 6.7e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 88  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 147

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 148 PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 207

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 208 SSCPDNFVWLALGD 221

[Close]

BLAST of Csa7G351900 vs. NCBI nr
Match: gi|700203887|gb|KGN59020.1| (hypothetical protein Csa_3G745530 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           +N  W DL+ GN+ + W  +W+ HG CS   F  F+YF + L+   +  + + L   GL 
Sbjct: 87  LNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILKAAGLN 146

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVD-QYRRIQLQKAVLCYVKDGHTLIDCPDNV 120
           P +S+ +A  + +  I  +T K  G+ C  + +  + QL + VLC  KDG TLIDCP  V
Sbjct: 147 PQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLIDCPTFV 206

Query: 121 SSSCPDNFVW 130
           S++C  +FVW
Sbjct: 207 SNTCAKSFVW 216

[Close]

BLAST of Csa7G351900 vs. NCBI nr
Match: gi|659085730|ref|XP_008443571.1| (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLD----R 60
           +++YW D+ NGN+   W+++W+ HG C    F+  +YF L LD +  + +   L+    R
Sbjct: 85  LDRYWPDVINGNNRGFWSNEWKKHGACIDPPFNITQYFQLSLDHHRTYDLLKILNGVWHR 144

Query: 61  EGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLIDC 120
               P++   +A    +  I N+T K  G+ C  +   +++QL + VLC+  +G TLIDC
Sbjct: 145 NRQMPNNG--LAPKDILNPIFNATNKTAGIRCNKNGITKKLQLHEIVLCFDNNGTTLIDC 204

Query: 121 PDNVSSSC-PDNFVWL 131
           P  VS+SC    FVWL
Sbjct: 205 PKFVSNSCNQPKFVWL 218

[Close]

BLAST of Csa7G351900 vs. NCBI nr
Match: gi|778683692|ref|XP_011651927.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGL-----DTYGRHAIFSFLD 60
           +N+YW D+ +G +   W  +W  H  C    F  F YF + L      TY    + + L+
Sbjct: 87  LNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYD---LLTILN 146

Query: 61  REGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLID 120
             GL+  + K +   + +  I N+T  + G+ C ++   +++QL++ VLC+  DG TLID
Sbjct: 147 DAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTLID 206

Query: 121 CPDNVSSSCPD--NFVWL 131
           CP  VS++C     FVWL
Sbjct: 207 CPSFVSNTCTSQPKFVWL 221

The following BLAST results are available for this feature:

BLAST of Csa7G351900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4L1_CUCSA	4.7e-74	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1	[more]
A0A0A0LAN6_CUCSA	5.2e-17	36.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1	[more]
A0A0A0LAB0_CUCSA	3.0e-12	32.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1	[more]
A0A0D9X1T5_9ORYZ	1.6e-10	37.93	Uncharacterized protein OS=Leersia perrieri PE=3 SV=1	[more]
A0A0A0LDS5_CUCSA	8.1e-10	30.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1	[more]

BLAST of Csa7G351900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189392\|gb\|KGN44625.1\|	6.7e-74	100.00	hypothetical protein Csa_7G351900 [Cucumis sativus]	[more]
gi\|778727014\|ref\|XP_004149779.2\|	6.7e-74	100.00	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|700203887\|gb\|KGN59020.1\|	7.5e-17	36.92	hypothetical protein Csa_3G745530 [Cucumis sativus]	[more]
gi\|659085730\|ref\|XP_008443571.1\|	1.7e-13	34.56	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]
gi\|778683692\|ref\|XP_011651927.1\|	4.3e-12	32.61	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095018	cucumber EST collection version 3.0	transcribed_cluster
CU114422	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G351900.1	Csa7G351900.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU095018	CU095018	transcribed_cluster
CU114422	CU114422	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 1..129 score: 3.8
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 1..130 score: 4.8
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 1..115 score: 2.2
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 1..129 score: 2.88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G351900	Cla014924	Watermelon (97103) v1	cuwmB567
Csa7G351900	ClCG09G008700	Watermelon (Charleston Gray)	cuwcgB525
Csa7G351900	Cla97C09G171460	Watermelon (97103) v2	cuwmbB571
Csa7G351900	Bhi09G001094	Wax gourd	cuwgoB705
Csa7G351900	CSPI07G14570	Wild cucumber (PI 183967)	cpicuB354
Csa7G351900	Cucsa.078070	Cucumber (Gy14) v1	cgycuB076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G351900	Silver-seed gourd	carcuB0013
Csa7G351900	Silver-seed gourd	carcuB0095
Csa7G351900	Watermelon (97103) v2	cuwmbB550
Csa7G351900	Cucumber (Chinese Long) v2	cucuB132
Csa7G351900	Cucurbita maxima (Rimu)	cmacuB384
Csa7G351900	Cucurbita maxima (Rimu)	cmacuB531
Csa7G351900	Cucurbita maxima (Rimu)	cmacuB647
Csa7G351900	Cucurbita maxima (Rimu)	cmacuB914
Csa7G351900	Cucurbita moschata (Rifu)	cmocuB374
Csa7G351900	Cucurbita moschata (Rifu)	cmocuB522
Csa7G351900	Cucurbita moschata (Rifu)	cmocuB900
Csa7G351900	Melon (DHL92) v3.5.1	cumeB523
Csa7G351900	Watermelon (Charleston Gray)	cuwcgB565
Csa7G351900	Watermelon (97103) v1	cuwmB587
Csa7G351900	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G351900	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G351900	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G351900	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G351900	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G351900	Cucumber (Gy14) v2	cgybcuB152
Csa7G351900	Cucumber (Gy14) v2	cgybcuB323
Csa7G351900	Melon (DHL92) v3.6.1	cumedB502