CSPI07G14570 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G14570
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 13059950 .. 13060354 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGA

mRNA sequence

ATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGA

Coding sequence (CDS)

ATGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGGCGTCATCTGCGCAGTTGATCAATATCGTCGAATACAACTTCAAAAGGCGGTTTTATGTTATGTCAAAGATGGTCATACTCTCATTGACTGCCCAGATAACGTTAGCAGTTCCTGTCCTGATAACTTCGTGTGGCTTGCCTTGGGTGATTGA

Homology

[Close]

BLAST of CSPI07G14570 vs. TrEMBL
Match: A0A0A0K4L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 121 SSCPDNFVWLALGD 134

[Close]

BLAST of CSPI07G14570 vs. TrEMBL
Match: A0A0A0LAN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           +N  W DL+ GN+ + W  +W+ HG CS   F  F+YF + L+   +  + + L   GL 
Sbjct: 87  LNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILKAAGLN 146

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVD-QYRRIQLQKAVLCYVKDGHTLIDCPDNV 120
           P +S+ +A  + +  I  +T K  G+ C  + +  + QL + VLC  KDG TLIDCP  V
Sbjct: 147 PQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLIDCPTFV 206

Query: 121 SSSCPDNFVW 130
           S++C  +FVW
Sbjct: 207 SNTCAKSFVW 216

[Close]

BLAST of CSPI07G14570 vs. TrEMBL
Match: A0A0A0LAB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGL-----DTYGRHAIFSFLD 60
           +N+YW D+ +G +   W  +W  H  C    F  F YF + L      TY    + + L+
Sbjct: 87  LNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYD---LLTILN 146

Query: 61  REGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLID 120
             GL+  + K +   + +  I N+T  + G+ C ++   +++QL++ VLC+  DG TLID
Sbjct: 147 DAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTLID 206

Query: 121 CPDNVSSSCPD--NFVWL 131
           CP  VS++C     FVWL
Sbjct: 207 CPSFVSNTCTSQPKFVWL 221

[Close]

BLAST of CSPI07G14570 vs. TrEMBL
Match: A0A0A0LDS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLD--TYGRHAIFSFLDREG 60
           +++YW D+  G  ++ W  +WE HGTCS   F+ F+YF L L+   Y ++ + + L+  G
Sbjct: 85  LSKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAILNNAG 144

Query: 61  LAPSSSKYVAKASFITAIANSTLKKGGVIC--AVDQYRRIQLQKAVLCYVKDGHTLIDCP 120
           L PS+SK          I  +   K  + C     Q +  QL + +LC+   G   IDCP
Sbjct: 145 LHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNGQGQNNQLWEVILCFDHGGVNPIDCP 204

Query: 121 DN--VSSSCPDNFVWLALGD 135
                   C  +F W +L +
Sbjct: 205 AQPVPHKMCVGDFKWQSLAN 224

[Close]

BLAST of CSPI07G14570 vs. TrEMBL
Match: M8CHP4_AEGTA (Ribonuclease 1 OS=Aegilops tauschii GN=F775_10971 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 40/115 (34.78%), Postives = 54/115 (46.96%), Query Frame = 1


Query: 9   ENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSSKYVA 68
           + G SIE W+ +WE HGTCS  G  Q  YF   L    RH + + L   G+ PS S+  +
Sbjct: 120 KGGKSIEFWSHEWEKHGTCSDLG--QHGYFAAALGLKARHNLTAVLADTGIVPSDSETYS 179

Query: 69  KASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSC 124
            +S   AI   T     + C       +QL +   C  + G  LIDCP  V  +C
Sbjct: 180 LSSINDAIKEGTGFAAKLECNRGVAGEVQLYQVYQCVDRSGENLIDCPVPVQGNC 232

[Close]

BLAST of CSPI07G14570 vs. NCBI nr
Match: gi|700189392|gb|KGN44625.1| (hypothetical protein Csa_7G351900 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 121 SSCPDNFVWLALGD 134

[Close]

BLAST of CSPI07G14570 vs. NCBI nr
Match: gi|778727014|ref|XP_004149779.2| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA
Sbjct: 88  MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 147

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 120
           PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS
Sbjct: 148 PSSSKYVAKASFITAIANSTLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVS 207

Query: 121 SSCPDNFVWLALGD 135
           SSCPDNFVWLALGD
Sbjct: 208 SSCPDNFVWLALGD 221

[Close]

BLAST of CSPI07G14570 vs. NCBI nr
Match: gi|700203887|gb|KGN59020.1| (hypothetical protein Csa_3G745530 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLA 60
           +N  W DL+ GN+ + W  +W+ HG CS   F  F+YF + L+   +  + + L   GL 
Sbjct: 87  LNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTILKAAGLN 146

Query: 61  PSSSKYVAKASFITAIANSTLKKGGVICAVD-QYRRIQLQKAVLCYVKDGHTLIDCPDNV 120
           P +S+ +A  + +  I  +T K  G+ C  + +  + QL + VLC  KDG TLIDCP  V
Sbjct: 147 PQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIVLCLEKDGATLIDCPTFV 206

Query: 121 SSSCPDNFVW 130
           S++C  +FVW
Sbjct: 207 SNTCAKSFVW 216

[Close]

BLAST of CSPI07G14570 vs. NCBI nr
Match: gi|659085730|ref|XP_008443571.1| (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-14
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLD----R 60
           +++YW D+ NGN+   W+++W+ HG C    F+  +YF L LD +  + +   L+    R
Sbjct: 85  LDRYWPDVINGNNRGFWSNEWKKHGACIDPPFNITQYFQLSLDHHRTYDLLKILNGVWHR 144

Query: 61  EGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLIDC 120
               P++   +A    +  I N+T K  G+ C  +   +++QL + VLC+  +G TLIDC
Sbjct: 145 NRQMPNNG--LAPKDILNPIFNATNKTAGIRCNKNGITKKLQLHEIVLCFDNNGTTLIDC 204

Query: 121 PDNVSSSC-PDNFVWL 131
           P  VS+SC    FVWL
Sbjct: 205 PKFVSNSCNQPKFVWL 218

[Close]

BLAST of CSPI07G14570 vs. NCBI nr
Match: gi|778683692|ref|XP_011651927.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 1   MNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGL-----DTYGRHAIFSFLD 60
           +N+YW D+ +G +   W  +W  H  C    F  F YF + L      TY    + + L+
Sbjct: 87  LNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRMNKTYD---LLTILN 146

Query: 61  REGLAPSSSKYVAKASFITAIANSTLKKGGVICAVDQY-RRIQLQKAVLCYVKDGHTLID 120
             GL+  + K +   + +  I N+T  + G+ C ++   +++QL++ VLC+  DG TLID
Sbjct: 147 DAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVLCFGNDGTTLID 206

Query: 121 CPDNVSSSCPD--NFVWL 131
           CP  VS++C     FVWL
Sbjct: 207 CPSFVSNTCTSQPKFVWL 221

The following BLAST results are available for this feature:

BLAST of CSPI07G14570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G14570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4L1_CUCSA	1.2e-74	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1	[more]
A0A0A0LAN6_CUCSA	2.3e-17	36.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1	[more]
A0A0A0LAB0_CUCSA	1.3e-12	32.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1	[more]
A0A0A0LDS5_CUCSA	2.1e-10	30.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1	[more]
M8CHP4_AEGTA	1.8e-09	34.78	Ribonuclease 1 OS=Aegilops tauschii GN=F775_10971 PE=3 SV=1	[more]

BLAST of CSPI07G14570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G14570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189392\|gb\|KGN44625.1\|	1.8e-74	100.00	hypothetical protein Csa_7G351900 [Cucumis sativus]	[more]
gi\|778727014\|ref\|XP_004149779.2\|	1.8e-74	100.00	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|700203887\|gb\|KGN59020.1\|	3.4e-17	36.92	hypothetical protein Csa_3G745530 [Cucumis sativus]	[more]
gi\|659085730\|ref\|XP_008443571.1\|	7.8e-14	34.56	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]
gi\|778683692\|ref\|XP_011651927.1\|	1.9e-12	32.61	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G14570.1	CSPI07G14570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 1..129 score: 3.8
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 1..130 score: 4.8
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 1..115 score: 2.2
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 1..129 score: 2.88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G14570	Cla014924	Watermelon (97103) v1	cpiwmB586
CSPI07G14570	Csa7G351900	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G14570	ClCG09G008700	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G14570	CsaV3_7G026270	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G14570	Cla97C09G171460	Watermelon (97103) v2	cpiwmbB597
CSPI07G14570	Bhi09G001094	Wax gourd	cpiwgoB717
CSPI07G14570	Cucsa.078070	Cucumber (Gy14) v1	cgycpiB079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G14570	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G14570	Melon (DHL92) v3.6.1	cpimedB513
CSPI07G14570	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G14570	Silver-seed gourd	carcpiB0013
CSPI07G14570	Silver-seed gourd	carcpiB0099
CSPI07G14570	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G14570	Cucurbita maxima (Rimu)	cmacpiB388
CSPI07G14570	Cucurbita moschata (Rifu)	cmocpiB377
CSPI07G14570	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G14570	Melon (DHL92) v3.5.1	cpimeB536
CSPI07G14570	Melon (DHL92) v3.5.1	cpimeB527
CSPI07G14570	Cucurbita pepo (Zucchini)	cpecpiB159
CSPI07G14570	Cucurbita pepo (Zucchini)	cpecpiB338