CU095018 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU095018
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ribonuclease 2
Location	Chr7 : 12563595 .. 12563847 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAACCAATACTGGAAAGATTTGGAGAACGGGAACTCGATAGAAGCATGGGCGAGTAAGTGGGAAATGCACGGAACTTGCTCCGCGGCTGGGTTTGATCAGTTCAAGTATTTCTGCTTGGGTCTGGATACCTACGGTCGCCATGCCATTTTTTCATTTCTAGACCGTGAAGGATTGGCTCCCAGCTCTAGCAAGTATGTAGCCAAGGCTAGCTTTATCACAGCCATCGCAAACTCGACCTTGAAGAAGGGTGG

Library


Library category	ESTs
fruit (8DPP) library	3
hermaphrodite flower library	1
Cucumber female flower buds	1

Homology

[Close]

BLAST of CU095018 vs. TrEMBL
Match: A0A0A0K4L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.7e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP 70
           NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP
Sbjct: 2   NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP 61

Query: 71  SSSKYVAKASFITAIANSTLKKG 130
           SSSKYVAKASFITAIANSTLKKG
Sbjct: 62  SSSKYVAKASFITAIANSTLKKG 84

Query: 131  190
           
Sbjct: 122  84

Query: 191  250
           
Sbjct: 182  84

Query: 251  260
           
Sbjct: 242  84

[Close]

BLAST of CU095018 vs. TrEMBL
Match: A0A0A0LDS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-06
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLD--TYGRHAIFSFLDREGL 70
           ++YW D+  G  ++ W  +WE HGTCS   F+ F+YF L L+   Y ++ + + L+  GL
Sbjct: 86  SKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAILNNAGL 145

Query: 71  APSSSK 130
            PS+SK
Sbjct: 146 HPSTSK 151

Query: 131  190
           
Sbjct: 206  151

Query: 191  203
           
Sbjct: 266  151

[Close]

BLAST of CU095018 vs. TrEMBL
Match: Q6DFA3_XENLA (Rnaset2-prov protein OS=Xenopus laevis GN=rnaset2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAA---GFDQFKYFCLGLDTYGRHAIFSFLDREG 70
           NQYW DL + N  + W  +W+ HGTC+A+      Q KYF  GL+ Y +  + S L++ G
Sbjct: 90  NQYWPDLLHPNKSQLWKHEWQKHGTCAASLECLNTQLKYFSKGLEIYKQVDLNSVLEKSG 149

Query: 71  LAPSSSKYVAK 130
           + PS++ Y  K
Sbjct: 150 IIPSTTYYQMK 160

Query: 131  190
           
Sbjct: 210  160

Query: 191  215
           
Sbjct: 270  160

[Close]

BLAST of CU095018 vs. TrEMBL
Match: K7KG07_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 27/72 (37.50%), Postives = 36/72 (50.00%), Query Frame = 2


Query: 20  WKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSS 79
           W +L   N +  W ++W+ HGTCS   F QF YF L L   G + + + L  E + P  S
Sbjct: 128 WPNLNTQNDMRFWVTEWDKHGTCSLNKFSQFNYFRLALKIKGEYNLMTILSGEQIVPHHS 187

Query: 80  KYVAKASFITAI 139
               K S I AI
Sbjct: 188 TAYDKNSIIQAI 199

Query: 140  199
           
Sbjct: 248  199

Query: 200  236
           
Sbjct: 308  199

[Close]

BLAST of CU095018 vs. TrEMBL
Match: A0A0R0KLN7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G194500 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 27/72 (37.50%), Postives = 36/72 (50.00%), Query Frame = 2


Query: 20  WKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAPSSS 79
           W +L   N +  W ++W+ HGTCS   F QF YF L L   G + + + L  E + P  S
Sbjct: 102 WPNLNTQNDMRFWVTEWDKHGTCSLNKFSQFNYFRLALKIKGEYNLMTILSGEQIVPHHS 161

Query: 80  KYVAKASFITAI 139
               K S I AI
Sbjct: 162 TAYDKNSIIQAI 173

Query: 140  199
           
Sbjct: 222  173

Query: 200  236
           
Sbjct: 282  173

[Close]

BLAST of CU095018 vs. NCBI nr
Match: gi|778727014|ref|XP_004149779.2| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-41
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 5   RGNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGL 64
           R NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGL
Sbjct: 87  RMNQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGL 146

Query: 65  APSSSKYVAKASFITAIANSTLKKG 124
           APSSSKYVAKASFITAIANSTLKKG
Sbjct: 147 APSSSKYVAKASFITAIANSTLKKG 171

Query: 125  184
           
Sbjct: 207  171

Query: 185  244
           
Sbjct: 267  171

Query: 245  260
           
Sbjct: 327  171

[Close]

BLAST of CU095018 vs. NCBI nr
Match: gi|700189392|gb|KGN44625.1| (hypothetical protein Csa_7G351900 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.8e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP 70
           NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP
Sbjct: 2   NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLDTYGRHAIFSFLDREGLAP 61

Query: 71  SSSKYVAKASFITAIANSTLKKG 130
           SSSKYVAKASFITAIANSTLKKG
Sbjct: 62  SSSKYVAKASFITAIANSTLKKG 84

Query: 131  190
           
Sbjct: 122  84

Query: 191  250
           
Sbjct: 182  84

Query: 251  260
           
Sbjct: 242  84

[Close]

BLAST of CU095018 vs. NCBI nr
Match: gi|700203881|gb|KGN59014.1| (hypothetical protein Csa_3G743990 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAAGFDQFKYFCLGLD--TYGRHAIFSFLDREGL 70
           ++YW D+  G  ++ W  +WE HGTCS   F+ F+YF L L+   Y ++ + + L+  GL
Sbjct: 86  SKYWPDVVKGKDVDFWKHEWEKHGTCSNPPFNIFQYFELALNIRKYKKYDLMAILNNAGL 145

Query: 71  APSSSK 130
            PS+SK
Sbjct: 146 HPSTSK 151

Query: 131  190
           
Sbjct: 206  151

Query: 191  203
           
Sbjct: 266  151

[Close]

BLAST of CU095018 vs. NCBI nr
Match: gi|148223095|ref|NP_001086583.1| (ribonuclease T2 [Xenopus laevis])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 2


Query: 11  NQYWKDLENGNSIEAWASKWEMHGTCSAA---GFDQFKYFCLGLDTYGRHAIFSFLDREG 70
           NQYW DL + N  + W  +W+ HGTC+A+      Q KYF  GL+ Y +  + S L++ G
Sbjct: 90  NQYWPDLLHPNKSQLWKHEWQKHGTCAASLECLNTQLKYFSKGLEIYKQVDLNSVLEKSG 149

Query: 71  LAPSSSKYVAK 130
           + PS++ Y  K
Sbjct: 150 IIPSTTYYQMK 160

Query: 131  190
           
Sbjct: 210  160

Query: 191  215
           
Sbjct: 270  160

The following BLAST results are available for this feature:

BLAST of CU095018 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4L1_CUCSA	8.7e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1	[more]
A0A0A0LDS5_CUCSA	2.0e-06	39.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1	[more]
Q6DFA3_XENLA	2.6e-06	39.44	Rnaset2-prov protein OS=Xenopus laevis GN=rnaset2 PE=2 SV=1	[more]
K7KG07_SOYBN	7.7e-06	37.50	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]
A0A0R0KLN7_SOYBN	7.7e-06	37.50	Uncharacterized protein OS=Glycine max GN=GLYMA_03G194500 PE=3 SV=1	[more]

BLAST of CU095018 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727014\|ref\|XP_004149779.2\|	1.6e-41	98.82	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|700189392\|gb\|KGN44625.1\|	2.8e-41	100.00	hypothetical protein Csa_7G351900 [Cucumis sativus]	[more]
gi\|700203881\|gb\|KGN59014.1\|	2.9e-06	39.39	hypothetical protein Csa_3G743990 [Cucumis sativus]	[more]
gi\|148223095\|ref\|NP_001086583.1\|	3.8e-06	39.44	ribonuclease T2 [Xenopus laevis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G351900	Csa7G351900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LP461	FKNP3UI02LP461	EST
FKNP3UI02MY643	FKNP3UI02MY643	EST
FKNP3UI02NJ0QT	FKNP3UI02NJ0QT	EST
H0175087	H0175087	EST
csa01-1ms4-b03	csa01-1ms4-b03	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 5..83 score: 4.0
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 5..83 score: 1.4
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 5..83 score: 5.23