CU114422 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU114422
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 12563830 .. 12564212 (-)
Sequence length	395

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGTAGGAAATAAAAACAAACTTTATTGGAAGACTTTAACTCTTTTATGTGTAATTTACTTCACACTTGGATTATTTAGATTACAACATTTCAATCCTATTTACAGGATTGTCATGAACTAACTCATACCACACTTAAACCCAATACAGTTTATTCATTAGCTAGAGATTAATTACATATATTACCTTAACTCATAAGGTTTTTGTAAACTCTCATTACATATATCTCAATCACCCCAAGGCAAGCCACACGAAGTTATCAGGACAGGAACTGCTAACGTTATCTGGGCAGTCAATGAGAGTATGACCATCTTTGACATAACATAAAACCGCCTTTTGAAGTTGTATTCGACGATATTGATCAACTGCGCAGATGACGCCACCCTTCTTCAAGGT

Library


Library category	ESTs
fruit (8DPP) library	6
gynoecious flower library	1

Homology

[Close]

BLAST of CU114422 vs. TrEMBL
Match: A0A0A0K4L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -1


Query: 234 TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 293
           TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG
Sbjct: 80  TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 133

Query: 294  353
           
Sbjct: 140  133

Query: 354  396
           
Sbjct: 200  133

[Close]

BLAST of CU114422 vs. NCBI nr
Match: gi|778727014|ref|XP_004149779.2| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 9.5e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -1


Query: 234 TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 293
           TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG
Sbjct: 167 TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 220

Query: 294  353
           
Sbjct: 227  220

Query: 354  396
           
Sbjct: 287  220

[Close]

BLAST of CU114422 vs. NCBI nr
Match: gi|700189392|gb|KGN44625.1| (hypothetical protein Csa_7G351900 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 9.5e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -1


Query: 234 TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 293
           TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG
Sbjct: 80  TLKKGGVICAVDQYRRIQLQKAVLCYVKDGHTLIDCPDNVSSSCPDNFVWLALG 133

Query: 294  353
           
Sbjct: 140  133

Query: 354  396
           
Sbjct: 200  133

The following BLAST results are available for this feature:

BLAST of CU114422 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4L1_CUCSA	9.6e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G351900 PE=3 SV=1	[more]

BLAST of CU114422 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727014\|ref\|XP_004149779.2\|	9.5e-25	100.00	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|700189392\|gb\|KGN44625.1\|	9.5e-25	100.00	hypothetical protein Csa_7G351900 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G351900	Csa7G351900	gene
Csa7G351890	Csa7G351890	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KYMVT	FKNP3UI02KYMVT	EST
FKNP3UI02N9WC8	FKNP3UI02N9WC8	EST
FKNP3UI02NH1MQ	FKNP3UI02NH1MQ	EST
FKNP3UI02NR29E	FKNP3UI02NR29E	EST
FKNP3UI02NVAF5	FKNP3UI02NVAF5	EST
FKNP3UI02OJQGW	FKNP3UI02OJQGW	EST
G0197032	G0197032	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 7..50 score: 3.
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 8..50 score: 2.5