Csa7G279840 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G279840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 9899296 .. 9899665 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAATCGCATGTAGAAAGTAGGAGAGCCAAGCCGCTCAGAATGTGTCAAGTTCATTCAGTATCAGAATCTGCTTTTCGAACTCTCGACTCTCAATTGAAGCCACTATACAATCATTCGTAGAAAGTAAGAGAGCCATGCCATTTCGTGGTAGAATGCGTCAGGTTCCTTCGGTATCAAAACCTATATAGGAAACTCTCGACTCTCAATCGAAGCCATAATCGTCTGTATAAAGGAGAGACATGCTGCTTCGGGCAAGAATGCATCGGGTTCTTTCGGTATAAAAGAATGCGTGTGGAACTCTGGGCTCTTGGCCGAAGCCACATTACAATCGCCCGTAGAAAGTAGGAGAGCCAAGCCGCTTTAG

mRNA sequence

ATGTTACAATCGCATGTAGAAAGTAGGAGAGCCAAGCCGCTCAGAATGTGTCAAGTTCATTCAAATGCGTCAGGTTCCTTCGGTATCAAAACCTATATAGGAAACTCTCGACTCTCAATCGAAGCCATAATCGTCTGTATAAAGGAGAGACATGCTGCTTCGGGCAAGAATGCATCGGGTTCTTTCGGTATAAAAGAATGCGTGTGGAACTCTGGGCTCTTGGCCGAAGCCACATTACAATCGCCCGTAGAAAGTAGGAGAGCCAAGCCGCTTTAG

Coding sequence (CDS)

ATGTTACAATCGCATGTAGAAAGTAGGAGAGCCAAGCCGCTCAGAATGTGTCAAGTTCATTCAAATGCGTCAGGTTCCTTCGGTATCAAAACCTATATAGGAAACTCTCGACTCTCAATCGAAGCCATAATCGTCTGTATAAAGGAGAGACATGCTGCTTCGGGCAAGAATGCATCGGGTTCTTTCGGTATAAAAGAATGCGTGTGGAACTCTGGGCTCTTGGCCGAAGCCACATTACAATCGCCCGTAGAAAGTAGGAGAGCCAAGCCGCTTTAG

Protein sequence

MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASGSFGIKECVWNSGLLAEATLQSPVESRRAKPL*
Homology
[Close]
BLAST of Csa7G279840 vs. TrEMBL
Match: A0A0A0K7T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279840 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG 60
          MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG
Sbjct: 1  MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG 60

Query: 61 SFGIKECVWNSGLLAEATLQSPVESRRAKPL 92
          SFGIKECVWNSGLLAEATLQSPVESRRAKPL
Sbjct: 61 SFGIKECVWNSGLLAEATLQSPVESRRAKPL 91

[Close]
BLAST of Csa7G279840 vs. NCBI nr
Match: gi|700189169|gb|KGN44402.1| (hypothetical protein Csa_7G279840 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG 60
          MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG
Sbjct: 1  MLQSHVESRRAKPLRMCQVHSNASGSFGIKTYIGNSRLSIEAIIVCIKERHAASGKNASG 60

Query: 61 SFGIKECVWNSGLLAEATLQSPVESRRAKPL 92
          SFGIKECVWNSGLLAEATLQSPVESRRAKPL
Sbjct: 61 SFGIKECVWNSGLLAEATLQSPVESRRAKPL 91

The following BLAST results are available for this feature:
BLAST of Csa7G279840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7T7_CUCSA2.2e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279840 PE=4 SV=1[more]
BLAST of Csa7G279840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189169|gb|KGN44402.1|3.2e-43100.00hypothetical protein Csa_7G279840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091457cucumber EST collection version 3.0transcribed_cluster
CU093432cucumber EST collection version 3.0transcribed_cluster
CU150407cucumber EST collection version 3.0transcribed_cluster
CU156157cucumber EST collection version 3.0transcribed_cluster
CU156471cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G279840.1Csa7G279840.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU150407CU150407transcribed_cluster
CU156157CU156157transcribed_cluster
CU091457CU091457transcribed_cluster
CU156471CU156471transcribed_cluster
CU093432CU093432transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G279840Watermelon (97103) v2cuwmbB571
Csa7G279840Wax gourdcuwgoB707
Csa7G279840Cucumber (Gy14) v1cgycuB348
Csa7G279840Watermelon (Charleston Gray)cuwcgB525
Csa7G279840Watermelon (97103) v1cuwmB567
Csa7G279840Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G279840Cucumber (Gy14) v2cgybcuB323